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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000085_pilon:949265..955023+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11689.4.p1 ID=MSTRG.11689.4.p1|Name=MSTRG.11689.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5759bp|location=Sequence derived from alignment at sc0000085_pilon:949265..955023+ (Clytia hemisphaerica_ch_hm2_pilon)
ACAGTGACAGGGCAGCAGTGCTGACAGCTTAACAGTTACCTGTTAATCAA
TCAGTAGTAACAAGACTAGTAGGGGTAAGTCGGAAAATCTGTATTTAGTT
ACTCCTTTGGATTTTACTAGTTTTTCTGAAGAGTATGCTATACTTATAAT
TATCCAGCAGACTTTTGTCCCTCCTCGTAACAAATCATCTATTTTGGCAC
AAAATGCTACTCTAGGGATCCTGCAAGTGTGATGATCTGATTTGTTTCTT
TATTCAGTTCAgccaaaacatttaaaaccttGAAACTCAAGTTCATGATT
TAATCGGGaataaaatatactgtaattaaaaaatataataaaatccCATT
CCTCACACTCTTTTAGCCATCTTTACCacatatttttttgttcttgttat
tattgtttttctttatatacTCAAGTTATTTGATTCAGTCGCATTTAGTC
GTAGCATATGCGTATATCTTACTTATACTAAAGTTCTGGCTGGGGGGAAC
AGCAGTCTGttctctaaagaatcctgcattgtaacatgCATGCATAATTT
TTCATTCTTAAACCATATGCAGTTAATTCccatgataaacaaagaggaat
gaacaGTGGTACAGTTGTTACTTTTGGTTTgggttgtggacggcaaaatt
tgtcgttctttatgaaatttatcgttctttttgtctatttttagtaatcc
aggattctttagataaaccccctcacAACTCGGAGGACAAAAACCTgaca
aaacatacaaaaaactGTTCTATAGAGTTCagccagtatggattccacga
aatcttgcgccgaagatatttttccgtgcagcaagcctcacgccaagcaa
aatttcttttgtaccaacattcaatttttcaataagggtgcaagatggga
aaagaggcgcatgcgccaacataaTAATAAATTGACGTGAGCGCAAGCga
gcgaaagcaaatttagccaaatggaagctaaaaatcgatggattatggag
tcattcacgccgagctggaatCATTACTatacgccaactgaaaatcaaac
aatctttgtaagtacccttacgccaatgcgctaaaaacgtttcagttgta
cgccgaagaacttcggcgttagttacacgaaatccatactgggAGTTCAG
TTGAAAAAATTTGTGTCTTTTAGAGGATGTTTTGCCCCTTTGTCCAAATa
ggcaggctagctctaaagctctaaaacagcatctcaTAACATGAAAACTA
GAATAttattcttcaatgggaatcagaactataaagtgcacttacaaaca
tgaatatgtcagatctaataaaattaataacggcacgcactgtcatcatt
gacaatagaccttttttcaaagaggccaccctgttgaataattatgtagt
ccagcagaaaaacaatgataaaaccatgcataattattacaatatgcatg
atacagtaattatgcatggctctatcattgcttttatggctggactacat
aattattcaacaggacgtcctctttgaaaaaaggtctataaaacaaacaa
ttttctatcaagagtcttgtaaacattccaacaacttccattgaaatgat
cTGTCACTGCATCTGTCATTTTTAGCgcagtccgaggattgagccgagaa
tgcCCGCAGAACGCCCATTAGCTCCCGCAAGGATGataaactttaatctg
tcaatcattttctcaagcaaagagtatGCAAAGAGaatctagctttacga
tagtgccgcggatcatcagtggatagtattcaattatcatcatCCCTTtc
ttttcattcctagaacttttacaaaaaaaggaaaaatagaaaagttgtat
tttttactgctttaTTCGCatgctgaatttgaaagatcttctatactatg
tggcgtttttttgcaaacttcaaaaaactgatttttgtcccgcttttgcg
ggactttagcttaagtgcttgcatGCAGCAAGCAACAATTTTTGTATATA
TGAAGAGTTAGGGCTATACTGATAGGGTTGAGACATGACATAACACTACC
TGACAACCTTGCCAACTTGAGATGTTTATATCCTtgagataaaaaatttc
aagtgaAATCCGAAATCTTAGCCTAGTTTTTCCGACGACGttgtatattt
tgaaaattgacctCAGAATTATTTTTGTTAGAAATTCTGTACTCTTCAAA
CATCAAGTTCCCTTTTTAGACGGGGGTTTTATGGAGATATGGTGTTAATT
TTCTTACTCAATTATGGatggaaaataaaattttaaacatacaatcaaaa
caaagacgTACATGCATTGGTTTTTTGATACTGCACGAAATCCTTatttt
aaactcaaatcaaccTCCTGACAAACTATTCTAAATCACCACTGGCCTAC
AATTTTAGCGTGACAGacacaaaatatgaaattcttTTAGTATATCTAGA
TTGTAACaaaaaaactcaatgaaaaatcaaaaatggcaAGACTTAGTCTG
AAGAGATGTATGATCGGCTTTAcattaattttatgtttttggcTTGTATG
GAAGGTCAAGTATAAAAATCAAGGATTCATGAAATATCTACCCAAAGTAA
ATTTCTCATCTGTTGTCACACCATATGAATATCAAATGAAAGGGGATTTT
CTACCTCCTCACTTACGTAAACAAAAACTTATCCTTTTCTTCACATCACA
TTTCTACAGTGACATCTGGAAAGGATTAGGTCCTGATGTATTACCTGGGT
ACACCCAAAATGCACATTGTAACATTAAAGAATGTTCAATGACTTATGAC
AAAAAGAGAATAAACGAGGCAGATCTTGTGATATTTCATGGTGTAGATTT
TGAATATAAGAATTATACTGATAAACATTTCCAAGCAATGTTAAAGAAGA
AACCATCTCATCAACGATGGGTGTTTTGGATGCATGAGACTCCTGTTTAC
TATCCAGAACCTGGaaattatgataatttattCAATTGGACTATGACATT
CAGTCAAGGGTCTGATATCTACCACCCATATTACTCTTACAGAAGGCTAA
CTGCTGATGATGACAGACCTGGAAAGTACATGAACTATGCTCTTGGAAGA
ACAAAGAAAATAGCCTGGATGGTAAGTCATTGTGGTATGACAAGAGGTGA
ATATGTTATGGAACTGCAAAAGTATACTGATGTTACTGTTTATGGTTTGT
GTGGGGCATCTTATGATAATATGGCAGGCATATGTTCTCGTGTTGAAAGT
GAGTGTATGGATCAATTGAATCAATATCgattttatcttgcttttgaAAA
CTCATTTTGTGAAGACTATGTGACAGAAAAGTATTATAAATTTGGCATAA
TGTATGGTGCTGTACCAATAGTGATGGGCGCTAGATACAATGCATTGAAT
TCTATACCAGGGTCTTACATTGATGCTTCCACATTTCCTTCAGTACAAGC
TTTAGGAGAATACATTAATTTCCTCAGTGAAAATGATTATTACTACAATC
AATATTTTGAGTGGAAAAATCACTTCAAAATGGACGATGGAATTGATAAG
ATTTGTTTACTTTGTCATGCAGCTCATGATGTAACTAGAAAGTCTAGTTT
CCATAAACATTTCCATGCTTTTTGGAGCAAACAAGCAATGTGTGATCCCT
ATGAACCTGTCATTCAAAAGTTTGGTCACCAAATTGAACAGTCCAAACTT
TCTAGAATAGGCGAAGGTACAAAATCATAGACCtattttataattaaaac
attatctttttttataaccatttttaccttttgcactttattttttagaa
ctttaATCAATACTAAATTTAATAGTTATATCAAGTAAAATTACACATCT
AGAATTTCTGCCTTGtgtcttttttttcactttgcagtaggtttcttttt
ctttaaggtAGGCAATATTTCCAATTGGTCTTCTTGATAGTATTGTATTC
TTTCCTCTTTAATAGATGAATAGTAAAGATAATTAAatggatatttcaaa
aataagaaatagtTTCCAGCTGAAATTTGGTTTGCATTTTATTTCAAGAA
CTATAGTAAAAGGTAAtacatttcattgaaaaatcatattgCTTCAACCA
GAAGGCATTACGCAGCTAATACCTAAACTCGTTACACTGGTGGTGAAATG
TATAATctgtaaaaatcataaaattgttAATAAAAATAGAATGTTTTAAA
GAAAGTTACTTGAAACAGAAACCAAAGATTCATTCTTACCTATGTATCCT
ATATACTTATTAAAGAGCTGTGAATTAACCATTCAATTGGAGTGTTTACT
CTTTTGTTAGTACTGAACACAGTTGATGGTCATATTTGTAAAATTGGTTA
CTCACCATTTATCATAGTTGGACATCAACCAACGGGAtcacttctttatt
taattattcgactagaagaacaatgttaacaatattttctttattaatAG
AATATTGCAGAAAAATGAGCAATTACATGAACTATTCTGAAGCTTCAAAG
CTTTATGATGAAGCACGAGTTGCAGCAGATGCTGAAAACATTTACAACAT
TTTCACTGGGCTTCTCAAGAAACCAGCAAACAAAGTATTTCATTTATCAG
CATTTATCAATGATTTCTTATGTTTGTACATTGAGCCGGTTTGTTAACAA
CCTCATTTCCTGCGTATtagctttttatgattttttatcaaagtaTTGTT
TTGCATGAGCTTCTTCAAAAACTTCttaaataatcaaaaataaatattat
ggtgtattttattgtaattttattgcaatttttctttaatttttagatcg
atcttttGGATATTGGATGTGGTACAGGCAACTACAGTTATTCTTTCATG
AAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGATGTT
AAACTgtgccaaaatcaaaatgaaagtaTTTGAAGATAAAGTCACTGCAC
AAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGATGTT
ATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTGAAAGA
ATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTTGAAA
CCTTGGGTCAAGCTTACAATGTTTTAAAACCTGGTGGGGTACTAGTTATT
GATGTTATGTTTGAAGAAAATTGTGAAAGTTTTTGGTGGACCAGATTATG
TCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACA
TGATTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACATAC
TTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAATG
TATAGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGTTG
AAAAGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAGAG
ACTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTCTG
GACACATGGGAATCATAGTGCTGtttttgcaatgaagcctttagcataga
tttttgtttaatttttattaagtttgatttttcataaatttttcaattac
TGGTAAAACTGGTAAAAGACTTATTTATAAATTATTAACTAGGTTGAGGG
CTAGAAGGTTTATAAGGGTTTTTATAcgtttagaattttttataaagGTC
ATTTAAATACATACACAtgttttttctgggaaaaatcAATGTATCTACTA
ATTCAAGAG Coding sequence (CDS) from alignment at sc0000085_pilon:949265..955023+ >MSTRG.11689.4.p1 ID=MSTRG.11689.4.p1|Name=MSTRG.11689.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000085_pilon:949265..955023+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGAT
GTTAAACTgtgccaaaatcaaaatgaaagtaTTTGAAGATAAAGTCACTG
CACAAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGAT
GTTATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTGAA
AGAATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTTG
AAACCTTGGGTCAAGCTTACAATGTTTTAAAACCTGGTGGGGTACTAGTT
ATTGATGTTATGTTTGAAGAAAATTGTGAAAGTTTTTGGTGGACCAGATT
ATGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGG
ACATGATTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACA
TACTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCA
ATGTATAGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGG
TTGAAAAGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCA
GAGACTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCT
CTGGACACATGGGAATCATAGTGCTGtttttgcaatgaagcctttagcat
ag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085_pilon | genome | sc0000085_pilon:949265..955023 + |
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