MSTRG.11687.3.p1 (mRNA) -

Overview
NameMSTRG.11687.3.p1
Unique NameMSTRG.11687.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:921687..929214+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11687.3.p1 ID=MSTRG.11687.3.p1|Name=MSTRG.11687.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7528bp|location=Sequence derived from alignment at sc0000085_pilon:921687..929214+ (Clytia hemisphaerica_ch_hm2_pilon)
GTCAAGTGTACAAGGTGAGGTTAAGAAGGTTGGATGATCCAGCTTAAGag
attttttggatattttccaGAGATACATTACATTGAGAAGCGCATTATGC
ACGATAAGCCTTGTCAGATATGATGTGAGATCTTTTTAAGAGAGGAACGT
TATCAGTTATGTCTTGTGAAATAAATAACAGACCAGTCAAAACACACTCT
CGTCACGTGGTCTCATAAGCATAAAAGCTTTTTAGCTGTAGTAGTAGTGG
AATGAAAGGAAATACCCTTTCTTCCTTTCAGGCTAGACATTTGAACTGAt
ttttttATCTGAAGGCTTTGATTAGCTATTTTGGAGACACCAAGACGAGT
GAGAAATAGAACAGATGCATAGGAATATTCCGTTCAACTTACGAGACTAG
TAATGGTACAGGGAGAGTATATTCTTCTCTTGAAGGTGAACAGTTTCAGT
TCGTGCAATGTCAAGAAAGGTCTTTAAACTATTTTCGTGACCAATTATGT
GGTGTACAAAAGATTTTAAGCAAAGATTTTATAAGCTCATTTTTCTCGCA
TTTATGATGGCTTGTTAAAACGGACCACAAATCTCTTTTCAACGCTCCAT
CGACAACATCACGAATTCACgaaagaatgataatattttggcAGAATGGG
CACGGTACTTCCTTttataaaacagaaaaataaagaattttacatTTCGA
TAGATTTCAAATAcgttatattttttggaattaaACTGACATTAGTAACG
CAAATAATTTCgcaatatttttgataatggaTCATGGTATATTAAATATC
GTTTAACGGTCTTCAACCATTTCTGTAACCACCATCTCTCACAATCGAAA
AGAGCTTTACTTGTAAGGAAGTCGTAGAGCTTGTTGGCTTCCATCAAAGT
ACTTTGCATATTGTTGGTGTTTTTCTATGCAAAACACGACATGTCACCCA
CATGGTGGGTAGCCCAATTCACGTTTTTGCAATGAATGTAACATGAATGT
TATTTGGACATCAAATTATGAATGAGTGACTGACTAGTCCTTTACTTGTG
AAATATGTgttggatttttttctgaatgGGAATAAATTTCTGACAAAGGT
CAAGCCGTTAGATAAGAATAGAGAGTTTATCCCTTCTTTTTTCTCACACG
GGAAGAAAGGATTTTCGTTACGGAGTACTAGTAGTTGGTAAGGCAAGAAA
AAATCTGGTGAAATTGTTTGTAAGGAGATAGACAGATAGGATTTAGTTGA
TCAGGATTTTGACTAATAGTTTTAAAAGGAAGAAAGATTTCgattaaaaa
aaagacaattgaAGCGCAATAAAGGCTGACTGAGATTCTGGCTGCTAGCA
AGCAACATTGAGGATCGGAATAAAGGGTTTTGTCTGAAAGAGAACTGAAT
ATTTGCAAGAAACGGATAAACTCAAAGAATGATCTAAATGAGCTCTTCTA
ATACCTCGACTGCACGTGTATAAGTTAATTATCGAATCATGCGAGGAAAT
ATCAGCCATTTTTATTGCTGACCGTTACAGTCTGACCATCCAGGAAAGAA
TTAACTTAAGGAAATGCAAAATCATGGAAACATTTTGAGTAAGCAAGAAA
CCATTTCTATGCTTGGGGATTCAGTATTCAGTTGGACTTAGTTGAGAAGT
TATTGTAACAATTCCTTTGTTTCTCTATTTTAGGAGTAATAATGTCTTAC
CCACACTTTCTATTTCGAAGAGATCTTTACTTAACTTAACGTTCTTTTCC
AGTGTTTTGCATAGGGAAGGTAGCAGATGTTTTGAGGAGAGAAAGTTTGT
TTTTACTGTGAGGGGGATATATCCTTGTCCTTCTACTTTCTGTGGTTTGG
GAGAGCTATTTATAAGTAACAGAATAACAGTATAAGGGGAAGAGAAAGAT
ATACAGTACaaataaacagtgaaaaagacactggagaaaaggaagaacga
aaaatcaggaaaaggattggaaacaaaTTCTATTGTGACAATTCGATTCG
ACTCATTTTTATTGTGCATTCAATCAAGATGCAGTTAAGCACAATAAGGA
GCtgtttaacttttgaaaactaggAAGACGTACACGAGTCTTCATGACAG
CATGGATTGTGAGCGATACGATTTTCATAGAAATATTTTTCGGAGTCATG
TTGCTATTATCTCTATACCAGACTCtttttttttACGCTTGTCATGATAC
AGGGGGTGTTTTGAAAACGTGTTTGCGCGTGTTTGTTCCACTGAcatata
ccctgagtatcagaggttaagttttcaaaaaatatattaacctctgaaga
caaataatagaaattttatcgcgcatgtgtcaatctaatcactgtacaaa
aaatcaaagatgaagagcaaatattaccatattaatgtctagcagactgt
atcagtatgcagtttactatttacgaattccccagaaacctccaagtgta
gttgaaatgagtttatttcgaaagaaatcttttacatgatccccaaatgt
ataacagtaattactaaacttttgatTATGGAAataatgtcactttaatt
gaatcgaaataatagacagactttatgttatgattctctatcactgactc
tttttacaaagcattgatgactttttgtaagttgtgttttcaacgacggg
aataaaaatatcgactatgacgctcatccaagatcttgggtggtcgtcat
ggttacttttgtcttcgctgattgcgcgatgaatagaatctcgattcgtc
ggcacagcgtaaatatatgattttgagctgtgcttttcacggtaactgAC
ATGTGATTAGAGTCTTCTCTTTTCCGTTTATATGCATGTGTGTCGTATGA
TTCTTTAAATGTAGAAATGATGCTTGATGTGAAAAATTTGCTGCAATGAT
GAATAATGAGAATTAGAAGTTAACGACCACAAAGATTAATTTTGTTAACG
TCAGCAGGAAATTGAGGAAATCAATGAGAGCAGGTGTATTTAATGACCAA
TTACCGTAAAAAAGGAGTGTTCCAGTCTAAGTGTTCCGTTATATCATTTG
AAAGTATGTAATTAATGAAGTTTTGCATTTACATACGTTACTTGGGTAAA
ATATTCAGGATTTGATGAAGCGGAGGATTCCACCTGATGCACTTCTTAAG
AATATCAAATTATGAGTATCGAGTGAGGATGTAATCGTCTGTATTACGGT
GATGGAATGGCTGAAGTTTAACAGGTTTGATCACTGTTCGCGAGTGATGT
AGAACAGTGATAGGGTACTAAATCCACTGATAAGATCAAAGACCGAGAAT
AAGGTCGTTAAAAATCGATAATGGTTTCCCTAGGATACTTTTCTTCATTG
CATAAGCGTAAATTTGATCTAACCTGATGATAATATTAAGCCAATTTTTC
TGAACTGTTTTTGACATATTGGTAATGTAAGTCATGCTGACTTGTTGGAA
TGGTGTCCTTCTGTAATTCTAGATTAAGACCTTATAAACTTACGAGAACA
TGGATTTATGTTACATAAGTGACCGTTTATAGTATCAGTAATATGTACCA
TGCTGTTAAAGTAAGGACTGACTGCGTTTTGTATAGTATAGTCTCCCTTG
CTAATCCAGGAAGGCAGCCCAGTTTAGCAAGGATAGGAATGAAGATGTTA
GATAATTTTAGAAAGTTGACAAGGGTTGACCTGATGCATATTTTTGATTT
AGTGACGTCAATTAGCTCTGTCTCAACTGTTTGGACTTTCTTGTGGACTG
GGTTTGATAGCTGGCATAATTCAACAGGTCAACCAGGAAAAGCTCCCAGC
TCTTGCCAAGACAGGAATTTGTTATATAAGCATAGGATCTTTAAGATGCA
CAAACAAGTTTCAAATATTTGTCACCCCTTTTGATTGAGCAAATGGCTTT
GTCGCTTTAAAATAAGTAATTAGGGAAGCTGGGTTTTATGTTTAAAGGAC
TTTGTTTGCAATATGAGATTAATACTATCTATTAAGGAAGCGGGAGAGGT
TTGGAGAAGACTATATTTGGATCCATTGATGTCAGTTTTCGATTTTCATT
TCGTCTTTAACAGTATGTTGGAAATTCATACTCATCTCCGAACACGGAAC
ATTGTTCTGTCTGCTGGGTTAGGAATGTAAATTACTCAATACTGGACTGT
TCTATAAGTTATAAACATGACCCGCTATAAAAAGCGAGATTTATTTGATA
TAGCATATATCGATGTACCTCCCAAAGAGTGGGTGGAAAGTAAAGTTGGA
TTACTTTCTAAAATACTTATTACTTACAGAAAGTTGACATAAAATGTGTC
ATCAGAACATGACAGGCCTGTTTGCTCGGAATTCGCCTTTATTTCTCATA
GTTCTCGTGTGATGTGTTCAATTTTTGTTCTTGTGGTGttgaaaaaatac
cttttttgtcaaatttatcataatttatGGAgttctctttgacaacaaat
tgttATTTGTTCGTATCTTTGAAATTCCAGCGCTAATTGATATAACGGTT
ATCCTAAAGGTCCAACATATCAGTTTTCCGTTCTTTAAAACTGTGAGCCA
TTACGCCTTTCAGAGACGATCGGAAGTCTTTAAAGTAAGAGTAATTATCT
TCGACAGTTCAAAAGAGAACGAAAATTGTCCTACATTGACCGTTCTTTTG
TCAAGCGTGTGAAATCACTCTCCAACGAGAATCCAAAATATTTCTCTTTC
AACTTTAACTAGACCGCTTTAATTTACTATGACAGAAATAATTGAAAAGC
GGttaattttcaaatgattttgtttttgttttgtggggAAAGACAGACGA
TTTCCATGGTAAATTATGAAACATTATAAATGCGAGGGAGTTGTCTAAGA
ATTTAGTGGAAATACTGGAATAATTCTGTTTATTGACTAGCGCTTCTGAG
GCTTGTATACAGTAGATGACAGGGCCGGTCGTTAATATTGCTAGCTACTA
TTTCAAAGGCAATAAGATGAACTCTATTTTCTTACATGAAATGTCAGAAT
ATTTTGACCACATGCTTCCAGGAAATGTATGTTTTTGGAATTGATATTTA
GGTAACTATGGTAAAAAGTTTCGCCATTCAACTGTTTTGTTTACAAtgtt
ttgtctttatttttggaaaagaaggTTTTACTATCTTGAAAACTTTCTTC
TAATTCTGGACCCAATTTAATTCACACTTATGAATCTTCAATGAAATTCC
CTGGGATTTGTTTACAACTTTCACCGTCGAAGTGAGGGAAAACAGTGAAG
TAGGCAAAAATAGGATGGAAACTTAACAAGTGAATGGTGAATAGGAATGA
TAACTTGtttgtgaaatatttcaaaatggcgtGGCCTTTTTTATCTAATT
TACTTCGATTATTGTtgaatatttattcaatatttccTCGTTGGGATATT
CACTAGAGATTTGGGCAAAAATTGTCACCTTGAATATATTGGTGCTATAA
ATTGGGAGGAGGGGGTAATTTTTTGggacaaaaagtaatgaatatttCAT
GAATCAGAGCTATACTGAACATTAGCTTTGTCTATAGAAATTACACGAGT
TAGTATCACGTTTGCTCTGAACAGTTATGCTGCAATAAAGGAAGAGATTG
GCTTTAAATCTTTCCTTCTCTATTTCAATGGAGTCAGCATTATTTTGTCA
TAGCGGCGCCTTTTACTCTGATGACGAATCAATAAGCAAAAAAGAGAGGA
TTAAGAGAAAGACTTTAGGCTATAATTTATAAGctctctttcatttttat
cataaaCTTTATCGTTTGGGAAGTGAATATTTCTATTAACAATCTTGTGG
TGTAGACAAGACAAGAGCAAGTCTGCTAgagcattttttttcattaattt
tgaatatttttcaatattttcttcaaaagctTCATGATGGAGTTGATGAA
AAGGAAAAGTTTCCAATTTTGGCCAATTCTTATCGATGAAAAGTGAATAT
TTAGATAACAAAAGGATAACGATTGACTGTCTAGAGTTTTTATCGTTGAT
ATAGTTTAAGTTCTATGTGGTAGATTTGGAGTGATGGTAAACTGTAGTAT
AGTTTCAGGGCTCTCATTCACCAGAAATCTCGGTATCAAGGGCAAAGAAT
ATGGTTCTTGGGGATGCTGTACGAGGTTTAAGATTTCGATTTCCTTAACA
AAACGTTTTCACCTTTTTCCCATAGGAAAGTAGAAATAACCACCAACAAC
AAAGCAGCAATACAACCGACTCACCGGCAAACAATACTTCCACAACCTCC
TCAGCCAATAACAATAAAGCCACCATGAAGATGAAAGAGCACAaagattt
tgataatattcacATTGCATTGGCTGGTGCAAAGAATTGTGGGAAATCAG
GTAAGCGCCGAGAAATAgtctttgatttaaaaaaaattctaagaaacATT
CACATAATTATAAAAGGTTAAATCTAGACTTGAAACTACAAGGCGCTCTA
TTTCAAGGAATAGGAATTTGGACAATTTACTTCACTTTACACATCTTCTT
TGGATGACAATCACCAAAATTTCCCAATAATCCATTTAAACTTACGTAAA
TGCCTGTATTACTTGTATTACTATGAAATTCTCCCTTTACTTGCAGCACT
GGCGGTTCGTTATTTGACCAAACGTTTCATTGGAGAGTACGATTCACACA
AAGGTGAGTGAAATAaagagttttttttgtttttttttaatctatatata
ggtaacacgaacaaatagtacaaaactaaaggtTCCTAGCCTCctgcaaa
aggaccaccagatcataccgccaggaggtaggaacccaaactaagctaac
aataaacTAATAAATGGACTaataaatggagaaaaaaaactaactacaga
gaggataaatactaacagaaatgaaaaacaaaaactaaaagagctaggag
agcagttggagtaaaatactaaaattacggtcccccaaaacggcttgtat
cacagataaattttatcattataCTCAATATATCATGAAAGAGTTTTGAT
GACCAAAGAACATTCTTGGCAACTTGTTGAATTGGAAAGCCTTTAGGACC
TGTTATTTTGATAAGTGACATTactcgtttttttataagaaaaaactata
taagaacataattcttcgatggccaaaatgttaagagcatttGAACGCTT
TGGGGACTTTAAACACCCGATTTCAtatgaaaatggacaaaaaatattca
caaaatggggaaaataagaattatgtttttagacatttttaggcttaata
actcaaaaagttaagaacatctgaaggcttcaaaaattttgtatgttctt
atataaaaaagatgtATGGTTTTTACTCATGTCAGAAGAGAAATCAACTC
ATTTTACATTAATTATAACGTTTTCGAGTGATGAAAATACACGGTAGCAT
CAAAAGTATATTAGAGattataattttgaattttttcttttggtcttgtT
TAAGATGACATATGGCATCGAAGTATGACAGTTGCTGACAGAGAAGTTCG
TGTATCACTCAAAGATACCACTGGAACG

Coding sequence (CDS) from alignment at sc0000085_pilon:921687..929214+

>MSTRG.11687.3.p1 ID=MSTRG.11687.3.p1|Name=MSTRG.11687.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000085_pilon:921687..929214+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAGTGTACAAGGAAAGTAGAAATAACCACCAACAACAAAGCAGCAATAC
AACCGACTCACCGGCAAACAATACTTCCACAACCTCCTCAGCCAATAACA
ATAAAGCCACCATGAAGATGAAAGAGCACAaagattttgataatattcac
ATTGCATTGGCTGGTGCAAAGAATTGTGGGAAATCAGCACTGGCGGTTCG
TTATTTGACCAAACGTTTCATTGGAGAGTACGATTCACACAAAGATGACA
TATGGCATCGAAGTATGACAGTTGCTGACAGAGAAGTTCGTGTATCACTC
AAAGATACCACTGGAACGCAAGTGTACAAGGAAAGTAGAAATAACCACCA
ACAACAAAGCAGCAATACAACCGACTCACCGGCAAACAATACTTCCACAA
CCTCCTCAGCCAATAACAATAAAGCCACCATGAAGATGAAAGAGCACAaa
gattttgataatattcacATTGCATTGGCTGGTGCAAAGAATTGTGGGAA
ATCAGCACTGGCGGTTCGTTATTTGACCAAACGTTTCATTGGAGAGTACG
ATTCACACAAAGATGACATATGGCATCGAAGTATGACAGTTGCTGACAGA
GAAGTTCGTGTATCACTCAAAGATACCACTGGAACGCAAGTGTACAAGGA
AAGTAGAAATAACCACCAACAACAAAGCAGCAATACAACCGACTCACCGG
CAAACAATACTTCCACAACCTCCTCAGCCAATAACAATAAAGCCACCATG
AAGATGAAAGAGCACAaagattttgataatattcacATTGCATTGGCTGG
TGCAAAGAATTGTGGGAAATCAGCACTGGCGGTTCGTTATTTGACCAAAC
GTTTCATTGGAGAGTACGATTCACACAAAGATGACATATGGCATCGAAGT
ATGACAGTTGCTGACAGAGAAGTTCGTGTATCACTCAAAGATACCACTGG
AACGCAAGTGTACAAGGAAAGTAGAAATAACCACCAACAACAAAGCAGCA
ATACAACCGACTCACCGGCAAACAATACTTCCACAACCTCCTCAGCCAAT
AACAATAAAGCCACCATGAAGATGAAAGAGCACAaagattttgataatat
tcacATTGCATTGGCTGGTGCAAAGAATTGTGGGAAATCAGCACTGGCGG
TTCGTTATTTGACCAAACGTTTCATTGGAGAGTACGATTCACACAAAGAT
GACATATGGCATCGAAGTATGACAGTTGCTGACAGAGAAGTTCGTGTATC
ACTCAAAGATACCACTGGAACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11687MSTRG.11687Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11687.3.p1.exon1MSTRG.11687.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11687.3.p1.exon2MSTRG.11687.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11687.3.p1.exon3MSTRG.11687.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11687.3.p1.exon4MSTRG.11687.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11687.3.p1MSTRG.11687.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:921687..929214 +