MSTRG.11673.1.p1 (mRNA) -

Overview
NameMSTRG.11673.1.p1
Unique NameMSTRG.11673.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:785930..792582+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11673.1.p1 ID=MSTRG.11673.1.p1|Name=MSTRG.11673.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6653bp|location=Sequence derived from alignment at sc0000085_pilon:785930..792582+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttcacatttacTTTTACGCCCTTGTCaagaatcaatcaataaatcaaa
ttgcattatgggcatagAATATTCACGCTCGAATGTAAATGGTGCATCTT
TTACTTCGGCTGACTACCGTAACTCAACATGGGTTAGTAAACTTCTACTT
ACCCTTCATTATTATTGGCTTGATAGAGTATTTTCATCCTTTCATAACAT
CTTTGGATTGCCATTAAGGTGATATTGAAAACCACAGACAATTTTGATAC
AGTTTTATTACTATTGGAACACACGAAGAGAGGAACCAAAAATAGCCATA
CTAAAATGATTTTATGTAGTATAACCACTGGAAAACTTACTGACTGGAAT
AATTTTGAGATCTGTCTAGGAGAATAAACTGACTTTGACTTTCATTTCGT
GAATTTTAGGTAAGCCACGTGGAATTCGTGTTGCCCGTAAATTGAGAAAC
CACAGACGTGAACAGAGATGGCACGATAAACAATACAAGAAGGCTCACTT
GGGAACAGCATTAAAGGCCAACCCTTTTGGTGGAGCTTCTCATGCTAAAG
GAATTGTTTTAGAAAAAGTGTAAGCTACTAATTGATGTTATTATGATAAT
TTCTAAGATTGTTTTCAAATTGGAAATCAAAAGTCACTGATAATTTTTGG
TTTCAAAGCATCTATtaggggcgacgtccatattcaaagtcgccacgcgt
aacgggaaaagaccgttactttcaaaacatacctacccaccaccttaacg
gtcttcatgatttgaccaaaattttaccgaagctttcattcccgctaaaa
tcaaaacaaacggcccgctaCAAAGGTCGCCATTTTCAGAGGTTTACAAC
GGCCGAATTCcattacaatttttaaacggcctttgtttttaaaactccca
aggcaagaatgttatactctgaaaccacccctaaattgctcagggaaagg
attttggatagcatgctaaaggaaaaagcgaagaagtgagcgctacgata
agcgatctttgattttttccttggaatttttagtggagtttcattttggt
catcaatgccacagctaactctcaacattccgatatacctacccactaac
ggtcttttcccgttacgcgtggcgactttgaatatggacgCCGCCCCTTA
TGGATAACTTTTTACTATTGGTATTATTTTGAAAGTCTCAGAAATCGTAA
ATCATTCAAAAACTAAGTAAGACGAAGTGTATCTGcctgttttgatgttt
ttatccAGATAAGACCTTTCTCTTTGAAACCATCAATTTTTAAGATGTTA
AACTACTTTGGGTCTAACATTTTAAAAGATGAGATTTGTCCCCCATAGGC
AATAAGGGTGAATGACTTCCAGTACGTGCAGTCCTGAGGAGTATGTTTTC
GATATAAAAAAGCACTGTAAGGGTCTAAATGTGTGAAGATGAGTGATAAG
TACaaaagggtgtaaaaagtgagcTAAACATAGTGCCTACCTAATAGGAA
TGATATTGTCTTTGAAGGGATGTGGCCATTATTGACAATcagagttgctt
ataaaaatgatgTGTATATGAATATCTTAAGTTGAAGCTAGAGTCACTGT
TCAAAATACCAATCTTTTTGTGCCAGTGCTAGAGCATTCATAGAACAAAC
AAATCTTCATTCCTATTCACTGATAGGCCTGGTAAAAATTGCCAAAAGCC
AGATGAATCGGTCACCTGAATGAAAACAATATCTGAGATAAGAACCATTT
acatttcaattgttttttgaaGTTGATGGGTTAGTTGGGATTTAAATGAT
CAAAGGTTAAATTACTTCCAAAAAGTAGATGTGTTGATATATCGAGGTAT
ACTTTCAGTGTATGCTTGAAATGTGCACtaattttattttgcttttagtC
ATTAAACCCATACTTCAATTCTAGCTGCTCTAGTATTCAGTGTTTCCTGA
Agtgactacacgctttttttataagaatgtccatgatgaaaatggccgaa
aaactaagaataatgctaagaatattgccatcgtggaattttgctactca
agctaagaaagccatttttagagcattcttGATAATAATTTGTCAATTAC
CCCGAAGACGCCAAGTATGGctcacttttttcacaaaaatgccattttat
gcttgagacgtatgtactaaatgttaaatctagtctgaattaggatccta
acctaagagtgctgtaagaatattttaggatgattttcccaaaaaagcta
agaatatctatgaaatggatttacaccattcttgtAAACAAAAAGCGTGC
ATGTCTCTCTTGATTTAATGTGCATTTTCAaatgtcattataaaaaaaac
tcttgaaagtgACCCTCCGTCGTTTGCAGATGACCcagaaaataaagaat
tttttttaatctttccaagcaaagattagGCTGtccaataaatattttga
attttaatgaaTTGAGTTGAAGCTAGAGTCACTGTTCAAAATACCAATAT
TTTTGTGTCAGTGCTAGAGCATTCATAGATCAAACAAATCTTCATTCCTA
TTCACTGATAGGCCTGGTCAAATTGCCAAAAGCCAGATTAATCGGCCACC
TGAATGAAAACAATATCTGAGATTAACCATTTacatttcaattgtttttt
gaaGTTGATGGGTTAGTTGGGTATTTAAAATGATCAAAGGTTAAATTACT
TCCAAAAAGTAGATGTGTTGATATATTGAGGTATACTTGCAGTGTATGCT
TGAAATGTGCACtaattttattttgcttttagtCATTAAACCCATACTTC
AATTCTAGCTGCTCTAGTATTCAGTGTTTCCTGAAgtgactacacgcttt
tttataagaatgtccatgatgaaaatggccaaaaaaactaagaataatgc
taagaatattgccatcgtggaattttgctactcaagctaagaatgccatt
tttagagcattctcGATAATAATTTGTCAATTACCCCGAAGATGCAAGTA
TGGctcacttttttcacaaaaatgccattttatgcttgagacgtatgtac
taaatgttaaatctagtctgaattaggatcctaacctaagagtgctgtaa
gaatattttaggatgattttcccaaaaaagttaaaaatatctatgaaatg
gatttacaccattcttataaacaGAAAGCGTGCATATGTCTCTCTTGATT
TAATGTGCATTTTCAaatgtcattataaaaaaaactcttgaaagtgACCC
TCCGTCGTTTGCAGATGACCcagaaaataaagaattttttttaatctttc
caagcaaagattagGCTGtccaataaatattttgaattttaatgaaTTGA
GTTGAAGCTAGAGTCACTGTTCAAAATACCAATATTTTTGTGTCAGTGCT
AGAGCATTCATAGATCAAACAAATCTTCATTCCTATTCACTGATAGGCCT
GGTCAAATTGCCAAAAGCCAGATTAATCGGCCACCTGAATGAAAACAATA
TCTGAGATTAACCATTTACATTTCAATTGTTTGAAGTTGATGGGTTAGTT
GGGTATTTAAAATGATCAAAGGTTAAATTACTTCCAAAAAGTAGATGTGT
TGATATATTGAGGTATACTTGCAGTGTATGCTTGAAATGTGCACtaattt
tattttgcttttagtCATTAAACCCATACTTCAATTCTAGCTGCTCTAGT
ATTCAGTGTTTCCTGAAgtgactacacgcttttttataagaatgtccatg
atgaaaatggccaaaaaaactaagaataatgctaagaatattgccatcgt
ggaattttgctactcaagctaagaatgccatttttagagcattctcGATA
ATAATTTGTCAATTACCCCGAAGACGCCAAGTATGGctcacttttttcac
aaaaatgccattttatgcttgagacgtatgtactaaatgttaaatctagt
ctgaattaggatcctaacctaagagtgctgtaagaatattttaggatgat
tttcccaaaaaagttaaaaatatctatgaaatggatttacaccattctta
taaacaGAAAGCGTGCATATGTCTCTCTTGATTTAATGTGCATTTTCAaa
tgtcattataaaaaaaactcttgaaagtgACCCTCCGTCGTTTTGCAGAT
GACCcagaaaataaagaattttttttaatctttccaGCAAAGATTAGGCT
GtccaataaatattttgaattttaatgaaTTGAGTTGAAGCTAGAGTCAC
TGTTCAAATACCAATATTTTGTGTCAGTGCTAGAGCATTCATAGATCAAA
CCAATCTTCATTCCTATTCACTGATAGGCCTGGTCAAATTGCCAAAGCCA
GATTAATCGGCCACCTGAATGAAAACAATATCTGAGATTAACCATTTaca
tttcaattgttttttgaaGTTGATGGGTTAGTTGGGTATTTAAAATGATC
AAAGGTTAAATTACTTCCAAAAAGTAGATGTGTTGATATATTGAGGTATA
CTTGCAGTGTATGCTTGAAATGTGCACtaattttattttgcttttagtCA
TTAAACCCATACTTCAATTCTAGCTGCTCTAGTATTCAGTGTTTCCTGAA
gtgactacacgcttttttataagaatgtccatggccaaaaaaactaagaa
taatgctaagaatattgccatcatggaattttgctactcaagctaagaat
gccatttttagagcattctcGATAATAATTTGTCAATTACCCCGAAGACG
CCAAGTATGGctcacttttttcacaaaaatgccattttatgcttgagacg
tatgtactaaatgttaaatctagtctgaattaggatcctaacctaagagt
gctgtaagaatattttaggatgattttcccaaaaaagttaaaaatatcta
tgaaatggatttacaccattcttataaacaGAAAGCGTGCATATGTCTCT
CTTGATTTAATGTGCATTTTCAaatgtcattataaaaaaaactcttgaaa
gtgACCCTCCGTCGTTTGCAGATGACccagaaaataatgaatttttttta
atctttccaagcaaagattagGCTGtccaataaatattttgaattttaat
gaaTTGAGTTGAAGCTAGAGTCACTGTATAAAATACCAATCTTTTTATGC
CAGTGCTAGAGCATTCATAGAACAAACAAATATTCATTCCTATTCACTGA
TAGGCCTGGTCAAATTGCCAAAAGCCAGATTAATCGGCCACCTGAATGAA
AAcatcttttttgaacatttcAACTACATAAGCATGcataaatttttgca
aaaaggcATTTAGTGATTTCTAAATTGGAAATATTGGTAACATGTTGGTT
ACTCAACTgctatttttacatttttaaaggTAAAGTTTGGCCAAAGAAGt
tgaaaaatgctgaaaattggGGAAATTTCATTGATTGTATTTAAGTTTTG
CTCATTTTTTGTACAATTGGAAATTTTACGTTGACTTATTTTCGCTAATC
GACAGGCTCCAAAATTTTTGCAAGGACTTAATTTTCGTGAAAAAGGACAA
TTCATGACAATTGAGAAAATTCATCTTATCAAGGTATAGGAGGTATATGT
TGTCTAAACAAAGCCCACGTCACCTGTACATactaatttaatttttattt
ccttttagTGGTGTTGAAGCTAAACAACCTAACTCTGCCATCCGAAAATG
TGTTCGTGTACAACTTATCAAGAACGGAAAGAAAATCACTGCTTTCGTTC
CTAACGATGGTTGTTTGAACTACATTGAAGAAAACGATGAAGTTCTCGTC
TCTGGATTCGGTCGTAAAGGTGAGCATTGCTTTATTGTTAAAGAAAGTTT
ACGACAGTGACGAACTTTCAGGCTGAACATCCTAATTAGCAACCTATTTC
AAGGTTTGCGGATTGTAGTTAAACATAGTTTTGGCCAAAGGAGTCCTGTC
CGATGTTAGAATAATAAtgagcagatattcaataggtaaaatttggttgt
tgagattttttaatccgaggtgatgtaatattaaACGAGACGAAGCCGAT
TGGTTAAGCATCACTGAGggcaagctggagtttttacaagctcttatttg
atttggttggtccttaagatgtaataaaagaatcttattacgttttctaa
agaacgcgtcatctctatcactttaaatgaccaattagtgaagtatcttg
taaaaactccaaggcatttCCATCActgagggttaataaatccaataacc
aatgAAACGTTTTACGTCCTAAGTAAATCATTTGCATAATAACTAAATGT
TAGGGTTTGATTTACAAATTTCTGTATTTTTTAAGGGTTAAGggccaaaa
tttgaaatcaccatTTGGCAAAATGACAAAGtgttttttgttaaaatgaT
CTCATCTTTTCATTTTAGGTCACGCTGTCGGTGATATTCCCGGTGTCCGT
TTCAAGGTTGTCAAAGTCGCCAACGTTTCGTTGTTAGCTCTTttcaaagg
aaagaaagaaaggcCAAGATCATAAATGAATAACAACTGTACATATACAT
GATTCGTTTTCCTTTCTTCACGTCCGCTCTCAGAGAATTCCTAGTGATTA
TGAAccatttgccaaaattttgaCGCTATACCCGCCAAGCGGGGATAAAA
TTC

Coding sequence (CDS) from alignment at sc0000085_pilon:785930..792582+

>MSTRG.11673.1.p1 ID=MSTRG.11673.1.p1|Name=MSTRG.11673.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0000085_pilon:785930..792582+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTAAGCCACGTGGAATTCGTGTTGCCCGTAAATTGAGAAACCACAG
ACGTGAACAGAGATGGCACGATAAACAATACAAGAAGGCTCACTTGGGAA
CAGCATTAAAGGCCAACCCTTTTGGTGGAGCTTCTCATGCTAAAGGAATT
GTTTTAGAAAAAGTTGGTGTTGAAGCTAAACAACCTAACTCTGCCATCCG
AAAATGTGTTCGTGTACAACTTATCAAGAACGGAAAGAAAATCACTGCTT
TCGTTCCTAACGATGGTTGTTTGAACTACATTGAAGAAAACGATGAAGTT
CTCGTCTCTGGATTCGGTCGTAAAGGTCACGCTGTCGGTGATATTCCCGG
TGTCCGTTTCAAGGTTGTCAAAGTCGCCAACGTTTCGTTGTTAGCTCTTt
tcaaaggaaagaaagaaaggcCAAGATCATAAATGGGTAAGCCACGTGGA
ATTCGTGTTGCCCGTAAATTGAGAAACCACAGACGTGAACAGAGATGGCA
CGATAAACAATACAAGAAGGCTCACTTGGGAACAGCATTAAAGGCCAACC
CTTTTGGTGGAGCTTCTCATGCTAAAGGAATTGTTTTAGAAAAAGTTGGT
GTTGAAGCTAAACAACCTAACTCTGCCATCCGAAAATGTGTTCGTGTACA
ACTTATCAAGAACGGAAAGAAAATCACTGCTTTCGTTCCTAACGATGGTT
GTTTGAACTACATTGAAGAAAACGATGAAGTTCTCGTCTCTGGATTCGGT
CGTAAAGGTCACGCTGTCGGTGATATTCCCGGTGTCCGTTTCAAGGTTGT
CAAAGTCGCCAACGTTTCGTTGTTAGCTCTTttcaaaggaaagaaagaaa
ggcCAAGATCATAAATGGGTAAGCCACGTGGAATTCGTGTTGCCCGTAAA
TTGAGAAACCACAGACGTGAACAGAGATGGCACGATAAACAATACAAGAA
GGCTCACTTGGGAACAGCATTAAAGGCCAACCCTTTTGGTGGAGCTTCTC
ATGCTAAAGGAATTGTTTTAGAAAAAGTTGGTGTTGAAGCTAAACAACCT
AACTCTGCCATCCGAAAATGTGTTCGTGTACAACTTATCAAGAACGGAAA
GAAAATCACTGCTTTCGTTCCTAACGATGGTTGTTTGAACTACATTGAAG
AAAACGATGAAGTTCTCGTCTCTGGATTCGGTCGTAAAGGTCACGCTGTC
GGTGATATTCCCGGTGTCCGTTTCAAGGTTGTCAAAGTCGCCAACGTTTC
GTTGTTAGCTCTTttcaaaggaaagaaagaaaggcCAAGATCATAAATGG
GTAAGCCACGTGGAATTCGTGTTGCCCGTAAATTGAGAAACCACAGACGT
GAACAGAGATGGCACGATAAACAATACAAGAAGGCTCACTTGGGAACAGC
ATTAAAGGCCAACCCTTTTGGTGGAGCTTCTCATGCTAAAGGAATTGTTT
TAGAAAAAGTTGGTGTTGAAGCTAAACAACCTAACTCTGCCATCCGAAAA
TGTGTTCGTGTACAACTTATCAAGAACGGAAAGAAAATCACTGCTTTCGT
TCCTAACGATGGTTGTTTGAACTACATTGAAGAAAACGATGAAGTTCTCG
TCTCTGGATTCGGTCGTAAAGGTCACGCTGTCGGTGATATTCCCGGTGTC
CGTTTCAAGGTTGTCAAAGTCGCCAACGTTTCGTTGTTAGCTCTTttcaa
aggaaagaaagaaaggcCAAGATCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11673MSTRG.11673Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11673.1.p1MSTRG.11673.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11673.1.p1.exon1MSTRG.11673.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11673.1.p1.exon2MSTRG.11673.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11673.1.p1.exon3MSTRG.11673.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11673.1.p1.exon4MSTRG.11673.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:785930..792582 +