MSTRG.11667.1.p1 (mRNA) -

Overview
NameMSTRG.11667.1.p1
Unique NameMSTRG.11667.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:727107..728637+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11667.1.p1 ID=MSTRG.11667.1.p1|Name=MSTRG.11667.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1531bp|location=Sequence derived from alignment at sc0000085_pilon:727107..728637+ (Clytia hemisphaerica_ch_hm2_pilon)
TTACTCTTGCTGGTTTACTCGTATGCTAACAACATCTTCAAAATGGGTGC
TCTATTATCATCAAAATACGTCAAGAAATCTGACTATCAAGCTCACTTGG
TACAAATCCAAGGATTGTTGGAGGACCTTCAACTCGTCCAATCCAGCCTT
gccaataaaacaaaagaaaatggtGACAACTTCCAACAATTCGTCGAAGA
ATTACGCGAAAACCATTCCACACATGTAAGTATCAAACACGAGCCCCACT
TTCCGTTTATTGAGTTAAATCTCACATTTACCCCCAGGATTTCCATTTCA
ATAAGTTAATCTTAAGGTATATTTTCCCGGACGAAGATCAATGTAGTATA
TTCAAAAGGTGtttttttGTTCTCATGGTGAGCTTATCGAAaatgagaca
gggttgtaagtGTGAATCATGCGCAATGTACTCATTGTTTTCCTCTATCA
GGCGTAAACTTCATAGAGAATTCTTTATTAATGCTTGACTTCGTCCCTGA
ATCAAAGCATCTTTTATATTGCCTTTGGTCATTTTTACAAGGTTTTAATA
TCACTGGTATGGCCTTCTCATGttcgtgtttttgttttttttttcagagg
aaGAAGATTCTGAGCGCCGAAGAGAAGATCATCACTTTGACGgagaaagt
gaaaaaagtgAACGAGCTGGACACAGTGAAGACCGATCTTCAACAAGTCA
CTCTCGAACATCATGAAGATAGAACCAAACTTTCTTCATATTTGAAAACT
TTCGTCGAAAGTGAAAAACGGAAATGGAACGACGATCTGATTGATTTGAA
GGTATAATCACTTCATTTTTCTCTGAAGTTTCTTTCTTTGCATCAAAGTT
TTCCAACACTTGAATTAATTCACTAGATTTTTATTAGGGATgtattaaag
aaaaattaaatctgtcatttcataattctttgcatcaaattctattgttt
ttcctCTTGATTTTAGTCACGCATTGAGGGCATTCATAAATACACAGGAG
AGCTTGTTGACCTTGATCTCCAACATGAACGAGAAATCAAAGAGCTTCGT
AACATGATTAAACATTTAGAAAGCAAGCTAGTTGAACAACAAAATCAGGC
TAGTGCATATCCTGACCCAGCCTGTGCCGACAAACCATCGGCAGCTGTGG
CGCTCTCTTCACCATCACTACCAGTGACAAGCAGTATCTTGAAACCGAGT
AAATTTCAAGTGACGCCCGTCGCCAAAGATTCCGCCTTCATCTCTCAACA
ACCGAGTCTTTTGTTGAATTCTGCCTCCAGCAGATCACATCGCTCGCACA
GTGTTTTGTTGAACCAACCAAGTGTTCTGTTGAATAGCATTTGCAGTCAT
GAATGCACTTGCTCCCCTCCTACCCAACATGAAAATTTCTCCaagatttc
tttgaaaatgaaagaactgagGAGAAATATCAACCAAGAAGAGCTCAAGA
AAAAAGCTTCTTTCAAACTCATGTAATACACCCACATCCTATGTTACCAA
TAAAGTATAATGATGCAAACTATAACCCAAC

Coding sequence (CDS) from alignment at sc0000085_pilon:727107..728637+

>MSTRG.11667.1.p1 ID=MSTRG.11667.1.p1|Name=MSTRG.11667.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2691bp|location=Sequence derived from alignment at sc0000085_pilon:727107..728637+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGTGCTCTATTATCATCAAAATACGTCAAGAAATCTGACTATCAAGC
TCACTTGGTACAAATCCAAGGATTGTTGGAGGACCTTCAACTCGTCCAAT
CCAGCCTTgccaataaaacaaaagaaaatggtGACAACTTCCAACAATTC
GTCGAAGAATTACGCGAAAACCATTCCACACATaggaaGAAGATTCTGAG
CGCCGAAGAGAAGATCATCACTTTGACGgagaaagtgaaaaaagtgAACG
AGCTGGACACAGTGAAGACCGATCTTCAACAAGTCACTCTCGAACATCAT
GAAGATAGAACCAAACTTTCTTCATATTTGAAAACTTTCGTCGAAAGTGA
AAAACGGAAATGGAACGACGATCTGATTGATTTGAAGTCACGCATTGAGG
GCATTCATAAATACACAGGAGAGCTTGTTGACCTTGATCTCCAACATGAA
CGAGAAATCAAAGAGCTTCGTAACATGATTAAACATTTAGAAAGCAAGCT
AGTTGAACAACAAAATCAGGCTAGTGCATATCCTGACCCAGCCTGTGCCG
ACAAACCATCGGCAGCTGTGGCGCTCTCTTCACCATCACTACCAGTGACA
AGCAGTATCTTGAAACCGAGTAAATTTCAAGTGACGCCCGTCGCCAAAGA
TTCCGCCTTCATCTCTCAACAACCGAGTCTTTTGTTGAATTCTGCCTCCA
GCAGATCACATCGCTCGCACAGTGTTTTGTTGAACCAACCAAGTGTTCTG
TTGAATAGCATTTGCAGTCATGAATGCACTTGCTCCCCTCCTACCCAACA
TGAAAATTTCTCCaagatttctttgaaaatgaaagaactgagGAGAAATA
TCAACCAAGAAGAGCTCAAGAAAAAAGCTTCTTTCAAACTCATGTAAATG
GGTGCTCTATTATCATCAAAATACGTCAAGAAATCTGACTATCAAGCTCA
CTTGGTACAAATCCAAGGATTGTTGGAGGACCTTCAACTCGTCCAATCCA
GCCTTgccaataaaacaaaagaaaatggtGACAACTTCCAACAATTCGTC
GAAGAATTACGCGAAAACCATTCCACACATaggaaGAAGATTCTGAGCGC
CGAAGAGAAGATCATCACTTTGACGgagaaagtgaaaaaagtgAACGAGC
TGGACACAGTGAAGACCGATCTTCAACAAGTCACTCTCGAACATCATGAA
GATAGAACCAAACTTTCTTCATATTTGAAAACTTTCGTCGAAAGTGAAAA
ACGGAAATGGAACGACGATCTGATTGATTTGAAGTCACGCATTGAGGGCA
TTCATAAATACACAGGAGAGCTTGTTGACCTTGATCTCCAACATGAACGA
GAAATCAAAGAGCTTCGTAACATGATTAAACATTTAGAAAGCAAGCTAGT
TGAACAACAAAATCAGGCTAGTGCATATCCTGACCCAGCCTGTGCCGACA
AACCATCGGCAGCTGTGGCGCTCTCTTCACCATCACTACCAGTGACAAGC
AGTATCTTGAAACCGAGTAAATTTCAAGTGACGCCCGTCGCCAAAGATTC
CGCCTTCATCTCTCAACAACCGAGTCTTTTGTTGAATTCTGCCTCCAGCA
GATCACATCGCTCGCACAGTGTTTTGTTGAACCAACCAAGTGTTCTGTTG
AATAGCATTTGCAGTCATGAATGCACTTGCTCCCCTCCTACCCAACATGA
AAATTTCTCCaagatttctttgaaaatgaaagaactgagGAGAAATATCA
ACCAAGAAGAGCTCAAGAAAAAAGCTTCTTTCAAACTCATGTAAATGGGT
GCTCTATTATCATCAAAATACGTCAAGAAATCTGACTATCAAGCTCACTT
GGTACAAATCCAAGGATTGTTGGAGGACCTTCAACTCGTCCAATCCAGCC
TTgccaataaaacaaaagaaaatggtGACAACTTCCAACAATTCGTCGAA
GAATTACGCGAAAACCATTCCACACATaggaaGAAGATTCTGAGCGCCGA
AGAGAAGATCATCACTTTGACGgagaaagtgaaaaaagtgAACGAGCTGG
ACACAGTGAAGACCGATCTTCAACAAGTCACTCTCGAACATCATGAAGAT
AGAACCAAACTTTCTTCATATTTGAAAACTTTCGTCGAAAGTGAAAAACG
GAAATGGAACGACGATCTGATTGATTTGAAGTCACGCATTGAGGGCATTC
ATAAATACACAGGAGAGCTTGTTGACCTTGATCTCCAACATGAACGAGAA
ATCAAAGAGCTTCGTAACATGATTAAACATTTAGAAAGCAAGCTAGTTGA
ACAACAAAATCAGGCTAGTGCATATCCTGACCCAGCCTGTGCCGACAAAC
CATCGGCAGCTGTGGCGCTCTCTTCACCATCACTACCAGTGACAAGCAGT
ATCTTGAAACCGAGTAAATTTCAAGTGACGCCCGTCGCCAAAGATTCCGC
CTTCATCTCTCAACAACCGAGTCTTTTGTTGAATTCTGCCTCCAGCAGAT
CACATCGCTCGCACAGTGTTTTGTTGAACCAACCAAGTGTTCTGTTGAAT
AGCATTTGCAGTCATGAATGCACTTGCTCCCCTCCTACCCAACATGAAAA
TTTCTCCaagatttctttgaaaatgaaagaactgagGAGAAATATCAACC
AAGAAGAGCTCAAGAAAAAAGCTTCTTTCAAACTCATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11667MSTRG.11667Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11667.1.p1MSTRG.11667.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11667.1.p1.exon1MSTRG.11667.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11667.1.p1.exon2MSTRG.11667.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11667.1.p1.exon3MSTRG.11667.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:727107..728637 +