MSTRG.11653.5.p1 (mRNA) -

Overview
NameMSTRG.11653.5.p1
Unique NameMSTRG.11653.5.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:557836..564810+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11653.5.p1 ID=MSTRG.11653.5.p1|Name=MSTRG.11653.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6975bp|location=Sequence derived from alignment at sc0000085_pilon:557836..564810+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAGATTAACTGCTGCAGAGTTGATGTCTAGCTTGCTCATGGTTCGGTTA
ATATTTCATCTTTAGACAAAGGATTTCTTTAGACATTGTGTTGCCTGGTT
TACTAAGCAACAAATTCTAGTGATTGGGGACTAGGAATATTTAGATAAGC
CATGATAGgcgaaaatattttaaaaatccaTAACTCATACATTTTGGAAA
GTTCGAGATGGAGAAAGCCTGCATATCCTTAAATTTTTGTCGACATAGAA
AAAATATGAGTTAGAGAGATCGAAAAGGCTAGACAAATGTCCAAGCGACA
AGTGGGACAGAGAGATATTGGAGATCGTGTAAGTAAGATAATTGATGGAG
AGATTTCTACTGTAGATTGAATCTAATGCTTTCttaagttttctcaaaaa
tgatcaTTTTAGCACCTTTCGATTTGCCGCAGCCCTACCCAACGCCAAAT
ATGGTATTCAAAGGTTAGATGTCTCCGGACAATTTTGTCTGAAAAGAGAA
GTTTTGTGCTTAACCAAATTTACCAATGTCGATATTGGATTTTCGGTTAT
TTATAGAGAACGCTACAGAGCAATTGCTCGTCGGGATGAAAAGGCCGTGA
TAATGGTGAACCTATCACAGAAAACTTTTTAAGCCTACATACAGTCATAT
CAATATTAAGTTGAGAATCCCGTAATATCGTGGAATAGGTACAATGTGTC
TTTTGAGAATTGTACTGTTAAAAATATGCTACTTTATTGTTGACCCAGTG
TTGACTAGTTAAGCCGGTTGGGGTGGAAAAAAGTTAACTATCCTCCTTTT
TATACAGGTACGAGCcaggaagtatcttatccatttggtggactaacttt
attggggtttttcttgttccttgtggtaataagaatattttaagcttctg
ggccacctggatttctcacctgggtatccataatggcggatttttggtca
tgtgacccctgtaggcaaaactgaaaattcttccaacccaaatataggct
tatcatatatcaatcgatcagaaatttgatactgattaattttgagatac
aaagttgggtctgtaaactttcctatctcgagatataaatcactttcgtt
ttctcaggtttggctgcagttgtaggcgggctttcatggagtgaggcaat
tcttttagtcatatctcaagaaatatgcttttaaacatatcaaaactttg
tgtgctcctagaaaaggcattgaaaattgtttgtgcaaattttcaaaaat
tttgcagtaaaaatgtgtattttacagaccagagtacaatttccttaccg
tcgaaaaaagacctttttctctcaaaattggccttttttgtctgaaatga
attaGTGAAATGATGCTTAATAAGGTTTAGAGCCACTCGATTCTTCATAT
TATACTCAGAGAGGTACCTGGGGAATATATAAGGGCTAAATGTGTCTGGT
CAGCACTTTATTAGCATTTTAtttttggtaagatttgatCCAAAAAACGG
TGAAACTTCCAAGCTATTACTCAAAGATTTGACAAAGTCTCTTATTGTAT
CTCGACATTAAACAAAGTTGAACCTTATTCTTTAGTTTGACACATGCAAA
GAATCAAGAATACATGTAAATCgctgtgtgtattttacagaccagaatta
agtGCTTCTAGGTGGTTATATTGCCCTAAAATGTTTAAACTTACCACGGA
AAAACCCGAGCTGGAGAATCTTACTGAGTAAAATCCGTCAAGATCCTCTA
ATTCCCatatctttattattcatgcatGTAACGAGAAATCTGTGTAGCCT
GTCTTTGAGACTTTGAGAAGTGCTTAGAACTTCCAGAACTGCGTAGCTAC
ataagcataaaattttgatgaaattagtcTGGCTTTGAGACCACTAAGCC
TGGATAGCTTTGTATGCGCCAGACGTCAGACTTTGaatcattttcctaaa
aaacaacaaagccccaaagtttttatttcttgcaaGCTTGTCTAGCACAG
ATTTGTCGCACAGTCGCTGAACGGCCTGTAGAGTTTCTGTCCACCCTACG
AccatcacatggtatgggttggtcCTAGCAAAGTAGCATTCACTTTTCAT
TAAGTGAAACACAGCACCGAGTTGGAGTTAGTCCTGATCTCCTAGACGAC
GGTCAATACTTggtacactactgcgccttcaCATGGGATAAATCataact
ggacgtctatcttccattgtgtctttgaagcgagcttcgttgccgcctgt
attttaaAATCGGTATAAAAAATCCGTTGATTTTCCGTCACAATAAtgct
atttctttgaattacttaggtaaaatgattgatagatagcttgaaagttt
gaaaatctatatattaatatgataaacgtgtgtgtttacaacgttttata
aaaagttttggaaaatctaacaaagctctacaaagcctcctcttcatggc
gttgaacttttttctcctttcttttataaaatcaaaatcttatcatCAAT
CAGCAGCTATCTTTATTCTTCTGTTGGGtttttttAGATGTATAGTGATT
tgctggattgggacacgcagaCATACGGCTAGTTATACTCTTAAgtcaca
aaataattattttcaattttttttatacgctgaaatggagaatttcaact
gcgtgtatacttttgactcacttttgtcattccaattagtttttttattg
acttgaaaaaaaaagtatgccaaagtttcgagcctgtgtcataagaatat
cataatttgaatcctaTACTCTCAATCCTatatactttaagggcagaaag
tttcgcgagaccgaaaagtcgcgaaatttcgcggatttaagattcgcgat
ttttactttttgaagaaaatttacggaagaaactttcgttttttgtgaat
gttcaattttattagcaataactttcgcgaatggctagggaaagtgaata
aaatattatttcaaatctcatttCGTGATGACGTTACCGCTATCCACCAC
CCCATtcgagaaaaagaaaaggaagaaaagtcgaatgaagaagctggaaa
tggaagCAGAGATATTCGTGAAATGTCCTCAGGTGGTAAAAAGAAGACAA
AAGAGCAAGGGAATTCTATCACTATCGAGTAAATCAttatagaaaataca
aaaaataagctATCgaagcattttcaaaaatcctgtCTTTTATTAACTGT
CTTGAGAATCTACATCCCCTTATAGCTAGgacgaaattatttttatcctc
TCCCAGCCTTTCCCCAAGTCCTcgttttatttagatttttcggcttttaa
aacttggaaaaaactttcgcgatttttaggaaagtttcatttttcggGAA
ATTAACTTATAACGCGAATTTCTTGTTTagtttcttacctggcagaaact
gcCAAAAACGCGAAAGACACGAAAGTTTCcacccgcgaaagtttctgccc
ttaaagtaatcGATATTATTTCAtcggagttttgaaaaatgacgatgatt
tcgcatctgttatctttgttatgatatagataaaagactggaGAAgtgta
gaacaacagagacttttgtcgaagttttgacgttgttagcaaggtattcc
caaggtaGATCATCGACacctattgtttcattttatgttttaacgaggcg
gcaacgaagctagcagtgcttACGAAGGAgaaggatgtccagtcgtttgt
TCATGTTCTGACAGAGCCACAGAGACCAGATGATTCTAAAACTTTACAAC
CTCATGAGGGGAAAGGAAAATGGGATCACCATCAGCAAGCCATTTCCGaa
acaaataagaattttaaaatcaagatttcttaatattatacttagatttt
tgtaagaaaacgaGGATAATTTTGACATGTAGCTTAAAGCATTATTTTAT
ATGGCAATAACTTCTTTAAAGcgcttttagttaaaattcctACAGTCTGG
CTTCTTCAACTAGCTGAAGGCGTTGTGTTGCATTCATGTAGTTAAAGCGG
ATATACAATGATGCATTGGACCACACCTCTTATAATTGTAACAGTAACCA
GAATAGCTCCAAGTAGGTTCACAAATATGGCTTCATCACTAGGCTTCCTA
CAATGGCCTAGGATTATCGCCTCTCGAAGCCATATTATGCCGACGTTTTT
TGGCCCTACAGACAACACAGATTCTAAGCCCTATAAATCTCGTTTCATGC
ATGAACAATAAAGATAAAGGAATTGGCAAATTTTGACGGATTAACTCAGT
AAATTCGTTCGGGTATTTCTGTAGTAATCCAAAGCGTTTTAGAACAAGAC
AAGCTCCTAGAAGCActtaaatctggtctgtaaaatacacactgtAACGA
TTACATTATTCATAATTCTTTGCATTAGTCAATCTAAAAAACAGAAGGTT
CTCGTTTAATGTTGAGATGCAATGagagaatttttcattaattatttgga
aatttcacagTTTTCGGGATCATGTCTTACCGTAAATCATacttataaag
tgctgaccgGACACATTTAGCCCGTACTTGTTGCTAAGTACCCCTCTGAG
TGAGATTAAGAAGAAGTGATTGGTTATAGACCCTATTGGGAAACATTTCG
ctcattcatttcagacaaaaaggccaatttggagagaaaaagatcttttt
tcgacggtaaggaaattgtactctggtctgtaaaatacacatttttactg
caaaatttttgaaaatttgcacaaacaatttttaatgccttttctaggag
cacataaagttttgatgtgtttaaaagcatatttcttgagatatgactaa
aagaattgcctcactccatgaaagcccgcctacaactgcagccaaacctg
agaaaacgaaagtgatttatatctcgagataggaaagttttaagacccaa
ctttgtatctcaaaattaatcagtatcaaatttccgatcgattgatatct
aatatgcctatatttgggttggaagaattttcagttttgcctacaggggt
cacatgaccaaaaatccgccattatggatacccaggtgagaaatccaggt
ggcccagaagcttaaaatattcttattaccataaggaacaagaaaaaccc
aaataaagttagtccaccaaatggataagatacttcctgGCTCGTACCTG
TATATTTGGCAGGTGAAGGGTTCAATTAAATCGAGGGATTCTCGAAATTT
ATTTAACGTGTTATAATGACTCTTTGGTTGTAGTTCGAATTTTTATCAGC
TCCTTTCTCATACAAAGAGATAAAGGGAAGACTTGCGAGCAATGTAGTAG
TACTTCTAATCTTGTATCAGCATGAAGCAATCAATCTGCTTCTGTTTCTT
CCTCTTTCTATTCAATGTTTCAGCCTGCTCACAGCATTGCTGAAAGTTCA
AGCGTTTGTACTGAAACATGAGCTGAAAGCTAATTAACCATTTAAAAAGT
TCAAATAACTTGTGATATTTGCATGTTAGAAGCGATTTGAAGCTATTTGT
AATCGATAGATAGCACttctttgattgtttttaaagattggtgttttgat
ttaagatttttaaagataaaactgTTTGCATACAGAGAGTTTACATAATA
TAAATCGATAGAAAATTGTGTTGAAGCATACACTGTTGAAACCAATCTGA
AACAAGCACTTAACAAATAGTAATTTGATCAGTCATGTCATTCGCTACTT
CCTTGATGGGTGTTATGCGTATAAAAGCAGTCAGCTCTTCTTTCTTTACC
CATTACTTTCCACAATGGCTTCTTTCGTTTTGATCAGCTTGTTCGTACTA
TTTACAGGATATAATATGAAGCCTATAACGGGTGAAGATGATTGGAGTCT
TGCCATGCCGTTCAAAGAATCTTTGAAATTAACTGATCCTCCAATGCAAG
GTCGGGAAGTAATGATTTTACAAAACCTTTTGAAAAGAGCACCTGGCATA
GAGTTGGTAGCTACTGGTGTTTTCGATGAAAATACTGAGAAAGCCTTGTA
TATGTATCAAGAACAAAAGGGTATACAACCTGCGAATGGTATCTTGAACC
CAGAGACTGCGATCTCAGTTTTAGAACACTTGATGAGTGATGGTTATAAG
GACGATGGGAGTATTCAAGAAGGAATGAAGTTCAAACTATACATCCCTGT
CTATAGAAACCGATCCATTGAAACACAAGCTACACTCTTCGACGGGCAAG
GCAAtgtcatttcaaaatttctggcCCGGACAAGAGGTTCGACCGGTGAC
AAAGGACAAATCGTAAACCAGCTCACAACGAACGGAAACACGCCTACTGG
TTTGGTTACTATGGACCTTAACACACCCGAACCCAAAAGTTTAGTCAAAT
CGTTTGGCCCTTATCCGGTACTACGTTTTGTAAAAGGTTTAAAAGGAAAT
GCTGCAATGGGAATTGATAATCAAACGGAGACATTTCTTAGTAATTATCG
GTCCGGTATTTTGGTTCATACCGGTATCTGGGATGATTGGACACCGGAAT
TACCTATGCCGAACAGTAATGGTTGTGTCCATGTACATCCCAGCGTTCAA
AGAGAAATCGTTGACCGGCTATTTATGCTAGGTGTCATTGCAAATGAAAA
TCCATTCGGAAAGCTCCCGTACCCCTATAGAATCCAAGGTATTGTCTCTG
TGGAGCaaattgattgaactgaaaattcaaaaattgaattcaaaattgaa
atttcattattcaCGCAGACAtgtaatataatatattttttgagagaaaa
ttgttttaaaatttgaaaatacaagaataataatttgatttcgAGTCACG
agcattcattttcttttcacaCCAACACTTGTTATCTTTGACGCCGTATG
TTGCTCCGTTGATAGTTTGATCAGTGTAAGCTTTACGTTGTAAACATTTG
TAGACACAGTGTTCACGATTTCTGACCAACCCTACGTAATCGTCATACTT
AGCATTGCTTCCATACATACCATCT

Coding sequence (CDS) from alignment at sc0000085_pilon:557836..564810+

>MSTRG.11653.5.p1 ID=MSTRG.11653.5.p1|Name=MSTRG.11653.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000085_pilon:557836..564810+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGCCTATAACGGGTGAAGATGATTGGAGTCTTGCCATGCCGTTCAA
AGAATCTTTGAAATTAACTGATCCTCCAATGCAAGGTCGGGAAGTAATGA
TTTTACAAAACCTTTTGAAAAGAGCACCTGGCATAGAGTTGGTAGCTACT
GGTGTTTTCGATGAAAATACTGAGAAAGCCTTGTATATGTATCAAGAACA
AAAGGGTATACAACCTGCGAATGGTATCTTGAACCCAGAGACTGCGATCT
CAGTTTTAGAACACTTGATGAGTGATGGTTATAAGGACGATGGGAGTATT
CAAGAAGGAATGAAGTTCAAACTATACATCCCTGTCTATAGAAACCGATC
CATTGAAACACAAGCTACACTCTTCGACGGGCAAGGCAAtgtcatttcaa
aatttctggcCCGGACAAGAGGTTCGACCGGTGACAAAGGACAAATCGTA
AACCAGCTCACAACGAACGGAAACACGCCTACTGGTTTGGTTACTATGGA
CCTTAACACACCCGAACCCAAAAGTTTAGTCAAATCGTTTGGCCCTTATC
CGGTACTACGTTTTGTAAAAGGTTTAAAAGGAAATGCTGCAATGGGAATT
GATAATCAAACGGAGACATTTCTTAGTAATTATCGGTCCGGTATTTTGGT
TCATACCGGTATCTGGGATGATTGGACACCGGAATTACCTATGCCGAACA
GTAATGGTTGTGTCCATGTACATCCCAGCGTTCAAAGAGAAATCGTTGAC
CGGCTATTTATGCTAGGTGTCATTGCAAATGAAAATCCATTCGGAAAGCT
CCCGTACCCCTATAGAATCCAAGGTATTGTCTCTGTGGAGCaaattgatt
ga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11653MSTRG.11653Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11653.5.p1MSTRG.11653.5.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11653.5.p1.exon1MSTRG.11653.5.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11653.5.p1.exon2MSTRG.11653.5.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:557836..564810 +