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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000085_pilon:456745..460224+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11646.1.p1 ID=MSTRG.11646.1.p1|Name=MSTRG.11646.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3480bp|location=Sequence derived from alignment at sc0000085_pilon:456745..460224+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTCGTTCACGTGAAAGAATCATGCTCGTCTATCACGTGAACACGGCATG
TTGAATCATGACTGTTCAACCTTCCTCCCTCCTCCAAGCGATCAAGTGAC
CTTTGCGCTCAATTTATAAACTCTGGTACAATCTTTCTGAAACTACTAaa
ttttttgtctttgttttttgaaCACGAAGAACTCAGAGGCAGAGGagatt
ttataatattttcatcTCAAAGAAATGATAATGGAACGACACAACTTTCG
ATACAACAGATACGATGTATGTAacatattttattatttgaaactCACTc
atttaaatttgttttaatgAAAATGGACCAGTAAATGCCAGTAAAGGTTT
TCAACTGGGTTTTGTTAAAATATACTTGCAGTTGGGTTGGCAGGATGTAT
ATACAAGACAACAATTTAAATTATTTAGTTTTGAAGTTCTTTCCCTAAAA
TAGGTTGAAGAATATCATTCTGGTTATTATGATCTTTATATCACTTTATA
TTACAGACAGGGCAATACACAAACATGAACACAGTCAAGAGATCAGAAGT
TCCTGACCTTGAAGCAGTCAACTCCCTTCTTTCACTGTGTAAAAGATCGT
TTAAACCTTCAGAGAATGGACGCTCAATCAAGACCAACGTCATCTCATCA
GTTTCAAGATCAACTcttcaatattttgatgaaagttCAAATGGAGAGGC
TCCTGTAAGTTGAAAGTTATTTCTCAAAAGAATTATCAATGCAGTTGAAA
TTCTCACTTGTTTGTGAAATAAGTTGTCATTTCTTCACTTCACTGAAGAA
AATTAAtcatttgtaataaaaattataaacaactcCTTCAAATCTAAAAG
TATAGTTTTAATCATGATTTCATGCAAATTCAATTTTGACGAGCAAAATA
TTACTATAACATGGGTTATGGCCTAAGCCAGGTAAAATTTTAGGTAAGGG
GTGATGAAACATAAGCTTGTCTTGATTCATTGACATTTAATCCAGAAAAT
CTTAAGTTTCAAAGTTCACTTATGGGCTGATTAAAAATtcatcttatttt
tctttctatgaCGCAACTTAgttaagaaataatgaaaaatacacaaagtt
taaagtttaatgTACTTTCTATTGTTATGGGTGACGTATATTATCGTGAA
ATTGAGCACAATTTgaactgtgaaaaaatttcgtacagtttataagaaaa
aaatttcataacacGTAAGAGTCATCACTTTTTCCGTTCACCCTCTGTAT
GTTTACATTGATCTTTCACTACTTTTTAATGAGTCTTATTAATCATGTTC
TTGTGACGTCACTTCACGTGATTCGAACATGAGCAcccatttcaaaaaag
ttctgCAAAATAACAAGGGAGATATAATACGTTccgaaaaataaactttg
agAAAAAACAGAATGCTCGGAAGCTTGGAAACTAGTTTTGaacgcataat
ttatgcaaaaaagACGTCATATTTAATTTATGCACtcttaatttcaaaac
aaaaacaatgtttATCCGCGGATTAACTTACTAAGAAATAGTTCGAAGTA
AGACTTAGATTTCGATGAATAAAAGTGTGCCACCAGTTTCGGAAAGATCA
TGTATAATGATTTCGTAAACATCAAGAAGTAGGATATATCTGCACTGCAA
TTGGATTCAAGTCATAAGACAGAGCAGCAGAAAGGCACTGAGAGATAATA
ATAAATACTTATTaaaagtttgaatttgaattgaaaatctTGTATAAGAt
ttaaagaaaacttaaaatggaTGAGTTTTTAAACAAACACATTCAAGAAA
TCATTGCAAATGATAGCAAATCACAACTGAATTTTTCAACTGCATTGACT
TTTGATAATTTGGATTGGTTTTCTCCTGATGAGCTTTTCGATGGAAACCC
AGAATCTGAGGTTGGTTTCAAAATCCATTGTATATAGCTAGATGATGACA
CTTGATTAATAGAAATTAATCTAATTCATATCCAAACTGATCTATAATCA
TCCTTTTTACTCCTTTATCTTTCAGAATTCTCCAGTAAATGTGGAACAGG
ACTTCCACCATCAACAGAACATAAACACCAACAACTTATACCCTTCACCA
CAACGCTTATATTCCTCCAGCTCATCTACAACATCATCAGTTTATTCTGC
AAGTGAAATCAGCGAGCGTTCACCACCATCACCTCCATCACCAACTATTC
CACCTTTGATTCAACACCAACCATCACCACCGCATCAACAACCTAAAATT
AAATGCCCCACACCGCCACAACCCATGGAAGAAGAAGATATCAAACCAAA
TCCAGAAGCTCTTAACTCAATGATTGATGTTGAATCTTTTAAAACATTAC
AAAAACTTCATAATATTCCAACTGTTTCAAGTATTGAAGAacttcaaaaa
tatcaaaaacttggTGTTCCTGCTTTACTACTATTTTATCCACaaaaaaa
CACAACAGATTCCACAACGAAAGAGGAGgataaaaacaaattgaaaacgC
CAGAAGATTTATTTAAGAACACTaaaaaaaTCCCAGTATTGAACGTTTCT
GGTGATGTTATCAAAATAGAACCAAAGTCACcaaaagaaacaacaaaaac
aaccaCCACAGCAAATGAAGACACTCGGGAAAGGATTCATGTATGTCCTT
ACCAAAATTGCGATAAAACCTATTTCAAGAACTCGCATCTGAAAACTCAC
ATCAGATCCCATACTGGTAAGCATCTCTTTATTTATTTTGGCATTCCTCT
GCAAAGTCAAAACCAATAACCCAAACATTTCAGTTCTCTCATTTCACATA
TACAGCAGTTACAACCAAAATTATGTggtattaattttcttttttctttt
tttgttcttcAGGAGAGAAACCATTCAAATGTGTTTGGCCTGATTGCGAC
AGATCATTCGCACGCTCTGACGAACTTGCAAGACATAAACGATCACACAC
aggagaaagaaaatttgaatgtcCCTTATGTTCAAGAAAATTCATGCGAT
CGGACCATCTCACAAAACATGCAAAACGACACATGCAAGCCAAGAAAATC
CCTGGCTGGCAAAGAGAGATTAACAAGTTGAACGAAATGGCTTCTGTTAC
ATACCAATACCCCAGCATTATCTCTGAACAAACTATGTCCAGGAATAAAA
TGCAGATAGAATAATTTCCAAGAGACATTTAGAAAGATgcattattttta
taaatataaaaagaaaattttcatttattttggtttgtttttattctaac
ttttttaacaaatttgtctactttctttgTAAACAAATACTGTAAATATC
TTTATAGAGCAATTGTAAATATCTTTGGTGTACTATATTTCAACGGAAGT
GGactttatatataaaatttgacACAGGAAAAATTACACGCATAAACAAA
Ctctttatttttgttctgtctttatggctcttctgattttctaaaagttt
ttgtttttcaactgtcgtccaaacatcaaa Coding sequence (CDS) from alignment at sc0000085_pilon:456745..460224+ >MSTRG.11646.1.p1 ID=MSTRG.11646.1.p1|Name=MSTRG.11646.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4932bp|location=Sequence derived from alignment at sc0000085_pilon:456745..460224+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATAATGGAACGACACAACTTTCGATACAACAGATACGATACAGGGCA
ATACACAAACATGAACACAGTCAAGAGATCAGAAGTTCCTGACCTTGAAG
CAGTCAACTCCCTTCTTTCACTGTGTAAAAGATCGTTTAAACCTTCAGAG
AATGGACGCTCAATCAAGACCAACGTCATCTCATCAGTTTCAAGATCAAC
TcttcaatattttgatgaaagttCAAATGGAGAGGCTCCTAATTCTCCAG
TAAATGTGGAACAGGACTTCCACCATCAACAGAACATAAACACCAACAAC
TTATACCCTTCACCACAACGCTTATATTCCTCCAGCTCATCTACAACATC
ATCAGTTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCACCATCACCTC
CATCACCAACTATTCCACCTTTGATTCAACACCAACCATCACCACCGCAT
CAACAACCTAAAATTAAATGCCCCACACCGCCACAACCCATGGAAGAAGA
AGATATCAAACCAAATCCAGAAGCTCTTAACTCAATGATTGATGTTGAAT
CTTTTAAAACATTACAAAAACTTCATAATATTCCAACTGTTTCAAGTATT
GAAGAacttcaaaaatatcaaaaacttggTGTTCCTGCTTTACTACTATT
TTATCCACaaaaaaaCACAACAGATTCCACAACGAAAGAGGAGgataaaa
acaaattgaaaacgCCAGAAGATTTATTTAAGAACACTaaaaaaaTCCCA
GTATTGAACGTTTCTGGTGATGTTATCAAAATAGAACCAAAGTCACcaaa
agaaacaacaaaaacaaccaCCACAGCAAATGAAGACACTCGGGAAAGGA
TTCATGTATGTCCTTACCAAAATTGCGATAAAACCTATTTCAAGAACTCG
CATCTGAAAACTCACATCAGATCCCATACTGGAGAGAAACCATTCAAATG
TGTTTGGCCTGATTGCGACAGATCATTCGCACGCTCTGACGAACTTGCAA
GACATAAACGATCACACACaggagaaagaaaatttgaatgtcCCTTATGT
TCAAGAAAATTCATGCGATCGGACCATCTCACAAAACATGCAAAACGACA
CATGCAAGCCAAGAAAATCCCTGGCTGGCAAAGAGAGATTAACAAGTTGA
ACGAAATGGCTTCTGTTACATACCAATACCCCAGCATTATCTCTGAACAA
ACTATGTCCAGGAATAAAATGCAGATAGAATAAATGATAATGGAACGACA
CAACTTTCGATACAACAGATACGATACAGGGCAATACACAAACATGAACA
CAGTCAAGAGATCAGAAGTTCCTGACCTTGAAGCAGTCAACTCCCTTCTT
TCACTGTGTAAAAGATCGTTTAAACCTTCAGAGAATGGACGCTCAATCAA
GACCAACGTCATCTCATCAGTTTCAAGATCAACTcttcaatattttgatg
aaagttCAAATGGAGAGGCTCCTAATTCTCCAGTAAATGTGGAACAGGAC
TTCCACCATCAACAGAACATAAACACCAACAACTTATACCCTTCACCACA
ACGCTTATATTCCTCCAGCTCATCTACAACATCATCAGTTTATTCTGCAA
GTGAAATCAGCGAGCGTTCACCACCATCACCTCCATCACCAACTATTCCA
CCTTTGATTCAACACCAACCATCACCACCGCATCAACAACCTAAAATTAA
ATGCCCCACACCGCCACAACCCATGGAAGAAGAAGATATCAAACCAAATC
CAGAAGCTCTTAACTCAATGATTGATGTTGAATCTTTTAAAACATTACAA
AAACTTCATAATATTCCAACTGTTTCAAGTATTGAAGAacttcaaaaata
tcaaaaacttggTGTTCCTGCTTTACTACTATTTTATCCACaaaaaaaCA
CAACAGATTCCACAACGAAAGAGGAGgataaaaacaaattgaaaacgCCA
GAAGATTTATTTAAGAACACTaaaaaaaTCCCAGTATTGAACGTTTCTGG
TGATGTTATCAAAATAGAACCAAAGTCACcaaaagaaacaacaaaaacaa
ccaCCACAGCAAATGAAGACACTCGGGAAAGGATTCATGTATGTCCTTAC
CAAAATTGCGATAAAACCTATTTCAAGAACTCGCATCTGAAAACTCACAT
CAGATCCCATACTGGAGAGAAACCATTCAAATGTGTTTGGCCTGATTGCG
ACAGATCATTCGCACGCTCTGACGAACTTGCAAGACATAAACGATCACAC
ACaggagaaagaaaatttgaatgtcCCTTATGTTCAAGAAAATTCATGCG
ATCGGACCATCTCACAAAACATGCAAAACGACACATGCAAGCCAAGAAAA
TCCCTGGCTGGCAAAGAGAGATTAACAAGTTGAACGAAATGGCTTCTGTT
ACATACCAATACCCCAGCATTATCTCTGAACAAACTATGTCCAGGAATAA
AATGCAGATAGAATAAATGATAATGGAACGACACAACTTTCGATACAACA
GATACGATACAGGGCAATACACAAACATGAACACAGTCAAGAGATCAGAA
GTTCCTGACCTTGAAGCAGTCAACTCCCTTCTTTCACTGTGTAAAAGATC
GTTTAAACCTTCAGAGAATGGACGCTCAATCAAGACCAACGTCATCTCAT
CAGTTTCAAGATCAACTcttcaatattttgatgaaagttCAAATGGAGAG
GCTCCTAATTCTCCAGTAAATGTGGAACAGGACTTCCACCATCAACAGAA
CATAAACACCAACAACTTATACCCTTCACCACAACGCTTATATTCCTCCA
GCTCATCTACAACATCATCAGTTTATTCTGCAAGTGAAATCAGCGAGCGT
TCACCACCATCACCTCCATCACCAACTATTCCACCTTTGATTCAACACCA
ACCATCACCACCGCATCAACAACCTAAAATTAAATGCCCCACACCGCCAC
AACCCATGGAAGAAGAAGATATCAAACCAAATCCAGAAGCTCTTAACTCA
ATGATTGATGTTGAATCTTTTAAAACATTACAAAAACTTCATAATATTCC
AACTGTTTCAAGTATTGAAGAacttcaaaaatatcaaaaacttggTGTTC
CTGCTTTACTACTATTTTATCCACaaaaaaaCACAACAGATTCCACAACG
AAAGAGGAGgataaaaacaaattgaaaacgCCAGAAGATTTATTTAAGAA
CACTaaaaaaaTCCCAGTATTGAACGTTTCTGGTGATGTTATCAAAATAG
AACCAAAGTCACcaaaagaaacaacaaaaacaaccaCCACAGCAAATGAA
GACACTCGGGAAAGGATTCATGTATGTCCTTACCAAAATTGCGATAAAAC
CTATTTCAAGAACTCGCATCTGAAAACTCACATCAGATCCCATACTGGAG
AGAAACCATTCAAATGTGTTTGGCCTGATTGCGACAGATCATTCGCACGC
TCTGACGAACTTGCAAGACATAAACGATCACACACaggagaaagaaaatt
tgaatgtcCCTTATGTTCAAGAAAATTCATGCGATCGGACCATCTCACAA
AACATGCAAAACGACACATGCAAGCCAAGAAAATCCCTGGCTGGCAAAGA
GAGATTAACAAGTTGAACGAAATGGCTTCTGTTACATACCAATACCCCAG
CATTATCTCTGAACAAACTATGTCCAGGAATAAAATGCAGATAGAATAAA
TGATAATGGAACGACACAACTTTCGATACAACAGATACGATACAGGGCAA
TACACAAACATGAACACAGTCAAGAGATCAGAAGTTCCTGACCTTGAAGC
AGTCAACTCCCTTCTTTCACTGTGTAAAAGATCGTTTAAACCTTCAGAGA
ATGGACGCTCAATCAAGACCAACGTCATCTCATCAGTTTCAAGATCAACT
cttcaatattttgatgaaagttCAAATGGAGAGGCTCCTAATTCTCCAGT
AAATGTGGAACAGGACTTCCACCATCAACAGAACATAAACACCAACAACT
TATACCCTTCACCACAACGCTTATATTCCTCCAGCTCATCTACAACATCA
TCAGTTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCACCATCACCTCC
ATCACCAACTATTCCACCTTTGATTCAACACCAACCATCACCACCGCATC
AACAACCTAAAATTAAATGCCCCACACCGCCACAACCCATGGAAGAAGAA
GATATCAAACCAAATCCAGAAGCTCTTAACTCAATGATTGATGTTGAATC
TTTTAAAACATTACAAAAACTTCATAATATTCCAACTGTTTCAAGTATTG
AAGAacttcaaaaatatcaaaaacttggTGTTCCTGCTTTACTACTATTT
TATCCACaaaaaaaCACAACAGATTCCACAACGAAAGAGGAGgataaaaa
caaattgaaaacgCCAGAAGATTTATTTAAGAACACTaaaaaaaTCCCAG
TATTGAACGTTTCTGGTGATGTTATCAAAATAGAACCAAAGTCACcaaaa
gaaacaacaaaaacaaccaCCACAGCAAATGAAGACACTCGGGAAAGGAT
TCATGTATGTCCTTACCAAAATTGCGATAAAACCTATTTCAAGAACTCGC
ATCTGAAAACTCACATCAGATCCCATACTGGAGAGAAACCATTCAAATGT
GTTTGGCCTGATTGCGACAGATCATTCGCACGCTCTGACGAACTTGCAAG
ACATAAACGATCACACACaggagaaagaaaatttgaatgtcCCTTATGTT
CAAGAAAATTCATGCGATCGGACCATCTCACAAAACATGCAAAACGACAC
ATGCAAGCCAAGAAAATCCCTGGCTGGCAAAGAGAGATTAACAAGTTGAA
CGAAATGGCTTCTGTTACATACCAATACCCCAGCATTATCTCTGAACAAA
CTATGTCCAGGAATAAAATGCAGATAGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085_pilon | genome | sc0000085_pilon:456745..460224 + |
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