MSTRG.11645.1.p1 (mRNA) -

Overview
NameMSTRG.11645.1.p1
Unique NameMSTRG.11645.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:445277..451162-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11645.1.p1 ID=MSTRG.11645.1.p1|Name=MSTRG.11645.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5886bp|location=Sequence derived from alignment at sc0000085_pilon:445277..451162- (Clytia hemisphaerica_ch_hm2_pilon)
AGGCTGATTATATTCATTTTAGTAAAAGCAAAATTAAATAATGGAATTCT
CAATTGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAAT
GGAGCAAGGAGCATTGTTCGCATGAAAGATGGTATGTTTTATTGTTTATA
TTCTCATACATATCTAAAAAGGTTCAATATATGAAAGGTTATAACTGCCC
ATAGTGTGCAAGGGGGTTCCAGGTCCCACCTAAAAATTCAGGTCCCACCT
AACCCTAAATTTCCCACCTCCAATCCAGACTCCCAGATCCCAGCTAAAAC
TACTATCCCCATGAAAAATTATACTAATACGAAGAAGGTAAACAAAAATT
ATTGTCCATGATAGGAAGATGCTAACGTATTACAAACACATTGCCATGCT
AATGCTTATATATTGCCAAACACTGCAATGGTTGTATTTGATTTGTTTTC
GACAATACAATTGACTTCTCAAAATAAGAAAGGGTAAAAGAAAACATTCT
GGAAAATATTTTCTGATATAGGGGGGTGGATACTAAAATCTAGGATATCA
TGATGTTTAGTGATGTGGTGGTATACCCAAAACACTTTAAATTCTTTTAG
TACCATTTGGGTATTAAAATACAAAAAAGGTGATATCCAGACTAAAATTT
CAGAATTTTTTTAGTTGATTGGTACTAAAATTAGTAATTTTATATATTTG
ATAGAATTTTACACTCTGAAGATGACCTCTTTCTGTGTAGGTCGAATACA
CAGTTTTTAAATTAAAAAACATGATGCTTCTGGTTATTCTTTTTTACCAT
TAAATTATTAGTCCAAGGAAATATCTTTCAATAATCTCTTTATGATTTTT
TAAGAATTTTTGCAATTTTTCGAAAAATAAAAATATTCTCATTATAAGAA
AATTCCCAAGTTCAATTATGTTTGCATTCAATCAAATATCTTTAATGTTT
CCTCAATTCAGAAGCAGCATTGTTTAATAGATTTTTGTGGAAAATAGATA
TCATCTTGCATAAAATCAGCATTCGCGAGGAAAATGGTTCTGAGAAGACA
AAATTTGTCTCGAAAATACCAAAATTGGGTGGTCTTTGTGTCCTAGTGTC
TTTAAAATATTTAGTGCAAGGACTGACAAGGGTACTAAAATACCACTTGT
CAAAATTAAGGTGGTGGTATACAAGAAATTCTCCAAAATACTTTAGTATG
ATTCATATTATGACCGAGATTTTAGTACTGATCCCCCCTGAATAAATTAC
AGTATAATAATAAAAAAGAGAAAAGCTTAGGACAGTAAAAAAATTATTTA
TAAAATATAACAGAGATAAGAAAAAATTAACTTTCACATTCACCAAAACA
CCAAAACTCCCACCTAAAGAAATTAACTCCCACCTTAACTTGTTTCTCCC
ACCTAGAACCTGAAAATTTCCAAATCCCACCTAGAAATTTCCGACCCAAA
ACAGCAAAACCCCCCCCACTATTCTGGGGGGGGTGCACACTATGCTGCCC
CAAGTTAACAACAACAAAAATTTTGGGGTTCTTTTATCAACGTTTCTACA
TCTTACAGGTCTTTTCATACAAAAAACACGAATCCGATAATAAAATTTAA
AGAATTTTTACAGTGTATATGAAAATTGCATGGAGAAAGTGCTATGCTAT
TGAGAAAAATGTTTTCAAGGAAAAAAATCTAAAGGACAAAAAGTTGAAAA
ATGAAGATGAGGTTTTTTCACCATTGGAAATATCTTTCCAACAGTGTATA
GCTTTTTGATATAGCATTAATACATGTTCAAAAATGTAAAGTGTACACAC
AGGGCTGCAAATAAGCGTCGGTCATTGGTTAATGTCCTACTGAAAAAGCC
ATTTGACCGACTGAAAATCTTTTGTGTCGGTCATGATGTCCGAATGAAAA
AAGGAATAAACCATTAACTTGAGATTTGAAAATAAATCTCTTACGTCTTT
TACTTAGCCTATTCTTTTAATACTCGCTTCCTTTGTAGCTTTCAGGGTGT
TTCTAAGTTTAATCTTATCGACTTGTTTTCTTCGTAGCCTTCTTTGTTTC
TAAGATCACAACACTTTTATCAATTTGCTTTCTTTGTAACTTTCAAGGGT
GTTTCAAAGTTTACTTTTATCGACTCGCTTTCTTCGTAACTTTCAAGAGT
GTTTCTAAGTTAACTTTTATCGACCCGCTTTCTTCGTAACTTTCAAGAGT
GTTTCTAAGATCACTTCTATCAATTCGCTTTCTTCGTAACTTTCAAGGGT
GTTTCTAAGATCACTTTTATTTATCGTATCAATTTCTCTGTTACATCATG
GATTTATTATAGAGACTCTGGATAAACATCGAATGAAACGGTGGAGAGTG
AAGTATTGTATTTCCATTGTTTCAAAAAACAATCGATGTACAGGCTTTGT
CCGCAAAGGACAACTGTATGGCGGCTCGAAGGACTCTGATTTTGAAAAAT
GATTAATACTCTTATTTCTTAAATGTTCTCTAACTTTATCTATTCGTACT
TTTGCTGGCAAAAGTTTGAAAATAAATGCTAGTATACCAAGCGGATACAT
TTATGAAATCTGGTGTGTGAAAAACATCACCAGACAAGTAAAATCAAACA
AAATGCTTATAATGACACGAAATTTTCAATTGGGAAAATTTTTCTTATAT
TTCTCTGAGAAGAGCTGAGATTGACATGTATTAGACGTGAGTCTCACAGC
TCCAATGTGGTTTGAAAATCTTTTGGTGGCACGTGGTGTCACGGTGGATT
TTTTGAGTTTGAAGTTTAAAAATTTCTGGTGTCAATATTCAATTTCTTAT
ACATAGCATGTTTTTGCATCTTTCTCGCAATTTAAAACGTCATAACGACC
TATAATTAGCAATTAACTAGAAGAGTTCGAATGTCAGAGGAGAACTTAAA
GTCTCATTTGGGAATTGGATAAGTGTATTTTGATGATAAATGCAATCAAA
ATGCTATGAAGAATCACTTTAATGGTGGAAGGAGGGTGAACAATACTGTC
ATTACTACGGACAAGGATTGTACATGAGAAATTGGCAAAAATCAGCCAGT
TGTTTTTCCAGTGTCTATAATAATTTCTTGGTTACAGTAACAAACTGTTC
CAAGGTAAATTTTATTTTACCTACTCGCTTTCTCCGTAACTTTCGAGACT
GCATAATTTTAGAAAAAATATACACTGAATGACCGACAGGATTTTGAGTT
TGACCGACAGGATTTCATTTCTGTCGGACATGATGTCCGATAGACTAAAA
ATATTTATTTGCAGCCCTGTACACATACCTTTTGAGAGAGACTTTAAATA
GATTATATAAATAGATTTTCATAGTATAAAAGTTATTCTTGCCTTACTAA
AGTATGGTTATCACCAAACTATCAAACTGAATTTTTTTAGATCTGGACAA
ACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATCAATGGAGAATCTG
GTGATGCAACAAATTTTGCAGAATACATTCAAAAAAATATTGCATTATAC
AAAATGAATAATGGTAAGCAGAGAACCTACACTTTACTCATTCTAACGTA
TGGGAAACTATATTTTACATGTTTTCTCAGTAAAAGCAAAAATAAATCAT
TTGATACGTTTGTATGGTCGTTCTTCATACACTTTTTCATGCAATAAAGT
AAAGGATGTTTTTTTTTCAAACTTGCTAAAAAGAATAGTTTTTTGATCTT
TGCTTAATCTTGTTGCTTCAACAAATTCTGATGAAAGTTAATCATAATCC
GAATTATTTTCTCATTTAGGTTATGAACTAACTCCTCACAGTGGCGCTAA
CTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAGTAAGTGTAT
ACCAGTTGTATACCTAGTTTATCATTCTACATCTGCAATTTGAGCTTTAC
TATATACCAGATGAGTTGTACAAACTTTATGATCCTTAGAACTTCTTCGT
TTTCATAAAAAATGTTGTACTCTTTTTCTCAAGTAGTGAACTAAAAACTT
TTACTGCTTCTAGTCCTAAGTTCAAGTTTTTTCTTTTCTCTGTCACATTA
ACATCAAATTTCTTTTACATCCAACTCCTCACATTCGTTGCCAAGAACTA
TGATCATTTTCTTCTTCATTTTCTTTAGACACCGTACCAAGTCAATTTAT
TATTATCGGGCTTTGACGAAAAGGAAGGACCTTCACTTTATCACATGGAT
TATTTAGCAGCCATGGTAAAGGTACGTCCACATATTGTAGTCCTGGCGCG
TTTTTCGTTTGTTTTTCAATAAAAAATTTTCTATTAAGGTGCTCATTTTA
CGGAGTAAATCTGTTAAAGTTGTCGAAGTGAGATAGACCCAAGTTTAATA
TTACACAATAAACTTGCTTACCTCAAGGAAACTAATTTTCACAGTAAAAA
CTAAATTTTACAAAATTTTGTTTTTTGCGAAAAAAATTGGTCATGAAATA
AAAGAAGTACTTTTACATTGCTTTCTGGTTGATTTCTTTCTGCAGGTTCC
TTTCGCAGCACACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATC
GCCATTGGAAACCAGGTATCCTTATAAGTTTTTTGTGTTTCCTACAACAC
TATTGTATCTGTGGGACCTTGAAAATCTTTTCACCTTTTCACAGCTGTTT
TGTCCAGTTTTTGCGCTTTTGGAAGTTCAATATCTCGAGTTAGGTACCGA
AATCATCTATACTCGCAATATATCACTAATCTTAATTTTTTGAGGGCTTT
CCAAAAGTATACAACAGGTCTCCGTTTTCTCAAGCTAAAATTTTCATTAA
TTTTTCACCCTATGATTTTTGCCTAAGACAAAAGGATTTGTCCGAAAATC
ACACCAAAGTGTCCGAAAAAAAATTGGCACCCAAGTTATTTGGATTCCCT
TACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAAT
CGAGCGATTTTACAAATTTCCCCCTACTATGAGCTCTGCTAAATGTTCTT
ATTTTTTGTGCACTGAAACAATCCCTGCTTCCTAGTCTCAAATCTTATTC
ATTGTTCTTTTTCAGGAATGACGAAAGAAGAAACAGCAGCTTTATTGAAG
AAAGTTCTTTTACAAGTAAGTTACTCATTCAACTATCTCATAATTTATTC
CATTACTCGAATTTCATGTCGATATCGACTGGGGATTTGACAGGTAAGAT
AGGTGGGGTGAAGAAACAGTGAGTTGTTTTTTTGCCGACTTTTTCATCAA
TATTTCTCTCTTCTTCAGGTTCAAAAACGATTCATTGTCAACCTACCAAA
ATTTTCCATACAAATTGTTAACAAAGATGGTATTACGAACCTGGGACAAT
TCACACCTAATGATATCACTGTGTAATTTATATCATCAACCAACCCTACC
AATTTTTATTTAACATCATTTTGATAGGATGTTTATAAAGCAATTTGGGA
GTGGTTAACAACGACCCTTTATAAAATCTAGAGTTACATTTAACCTGTTA
AATAGAAAGACCTGAAAACCTGTGTAATGTGATTTTACCCTATCACATTT
TTTAAATTTGCAGTTTTTCTCAGTGCTTCTGTAACCTTGGTTACTAAAAT
TACTTCTGTCAATCTTACCGAACGCATTTCCAACTCAACGCGTTTTATTT
GTTTAAACGTCTAAACCTAGAATGTTGAGCAATAAAACCTGCTTTGTTTG
AGCCCATTTATTTTGTTATTCTTATGGAATGTTCCCTTTTCTAAGATCAA
AGTTCGATGACATTCAATTTCAAAATTGCGAAATTTTTTAACATTGTTGT
TATTTTCAAATTTCATGATAGTCTGATTTTAAGTATGACTTTTTCTGCAG
AAAAAGATGAATTTTGAACTGTACTGTAAATATCAA

Coding sequence (CDS) from alignment at sc0000085_pilon:445277..451162-

>MSTRG.11645.1.p1 ID=MSTRG.11645.1.p1|Name=MSTRG.11645.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4242bp|location=Sequence derived from alignment at sc0000085_pilon:445277..451162- (Clytia hemisphaerica_ch_hm2_pilon)
GTTCAAAAACGATTCATTGTCAACCTACCAAAATTTTCCATACAAATTGT
TAACAAAGATGGTATTACGAACCTGGGACAATTCACACCTAATGATATCA
CTGTGTAAGAATGACGAAAGAAGAAACAGCAGCTTTATTGAAGAAAGTTC
TTTTACAAGTTCCTTTCGCAGCACACGGTTATGGTGGTTTCTTCTCTTTG
AGTACCCTCGATCGCCATTGGAAACCAGACACCGTACCAAGTCAATTTAT
TATTATCGGGCTTTGACGAAAAGGAAGGACCTTCACTTTATCACATGGAT
TATTTAGCAGCCATGGTAAAGGTTATGAACTAACTCCTCACAGTGGCGCT
AACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAATCTGGAC
AAACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATCAATGGAGAATC
TGGTGATGCAACAAATTTTGCAGAATACATTCAAAAAAATATTGCATTAT
ACAAAATGAATAATGATGGAATTCTCAATTGGTATTCAAGGAGCAGATTT
TGTTTTGGTTGCTTCTGATTGCAATGGAGCAAGGAGCATTGTTCGCATGA
AAGATGGTTCAAAAACGATTCATTGTCAACCTACCAAAATTTTCCATACA
AATTGTTAACAAAGATGGTATTACGAACCTGGGACAATTCACACCTAATG
ATATCACTGTGTAAGAATGACGAAAGAAGAAACAGCAGCTTTATTGAAGA
AAGTTCTTTTACAAGTTCCTTTCGCAGCACACGGTTATGGTGGTTTCTTC
TCTTTGAGTACCCTCGATCGCCATTGGAAACCAGACACCGTACCAAGTCA
ATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACCTTCACTTTATCAC
ATGGATTATTTAGCAGCCATGGTAAAGGTTATGAACTAACTCCTCACAGT
GGCGCTAACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAGCAGAAT
CTGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGATGACAATCAATGG
AGAATCTGGTGATGCAACAAATTTTGCAGAATACATTCAAAAAAATATTG
CATTATACAAAATGAATAATGATGGAATTCTCAATTGGTATTCAAGGAGC
AGATTTTGTTTTGGTTGCTTCTGATTGCAATGGAGCAAGGAGCATTGTTC
GCATGAAAGATGGTTCAAAAACGATTCATTGTCAACCTACCAAAATTTTC
CATACAAATTGTTAACAAAGATGGTATTACGAACCTGGGACAATTCACAC
CTAATGATATCACTGTGTAAGAATGACGAAAGAAGAAACAGCAGCTTTAT
TGAAGAAAGTTCTTTTACAAGTTCCTTTCGCAGCACACGGTTATGGTGGT
TTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAAACCAGACACCGTACC
AAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACCTTCACTT
TATCACATGGATTATTTAGCAGCCATGGTAAAGGTTATGAACTAACTCCT
CACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAGACTTTCTCCGTAG
CAGAATCTGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGATGACAAT
CAATGGAGAATCTGGTGATGCAACAAATTTTGCAGAATACATTCAAAAAA
ATATTGCATTATACAAAATGAATAATGATGGAATTCTCAATTGGTATTCA
AGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAATGGAGCAAGGAGCA
TTGTTCGCATGAAAGATGGTTCAAAAACGATTCATTGTCAACCTACCAAA
ATTTTCCATACAAATTGTTAACAAAGATGGTATTACGAACCTGGGACAAT
TCACACCTAATGATATCACTGTGTAAGAATGACGAAAGAAGAAACAGCAG
CTTTATTGAAGAAAGTTCTTTTACAAGTTCCTTTCGCAGCACACGGTTAT
GGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAAACCAGACAC
CGTACCAAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGAAGGACCT
TCACTTTATCACATGGATTATTTAGCAGCCATGGTAAAGGTTATGAACTA
ACTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAGACTTTCT
CCGTAGCAGAATCTGGACAAACATGTCAGCTTGGGGAAGAATTTTCTGAT
GACAATCAATGGAGAATCTGGTGATGCAACAAATTTTGCAGAATACATTC
AAAAAAATATTGCATTATACAAAATGAATAATGATGGAATTCTCAATTGG
TATTCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAATGGAGCAA
GGAGCATTGTTCGCATGAAAGATGGTTCAAAAACGATTCATTGTCAACCT
ACCAAAATTTTCCATACAAATTGTTAACAAAGATGGTATTACGAACCTGG
GACAATTCACACCTAATGATATCACTGTGTAAGAATGACGAAAGAAGAAA
CAGCAGCTTTATTGAAGAAAGTTCTTTTACAAGTTCCTTTCGCAGCACAC
GGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCATTGGAAACC
AGACACCGTACCAAGTCAATTTATTATTATCGGGCTTTGACGAAAAGGAA
GGACCTTCACTTTATCACATGGATTATTTAGCAGCCATGGTAAAGGTTAT
GAACTAACTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCTTGCAGA
CTTTCTCCGTAGCAGAATCTGGACAAACATGTCAGCTTGGGGAAGAATTT
TCTGATGACAATCAATGGAGAATCTGGTGATGCAACAAATTTTGCAGAAT
ACATTCAAAAAAATATTGCATTATACAAAATGAATAATGATGGAATTCTC
AATTGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATTGCAATG
GAGCAAGGAGCATTGTTCGCATGAAAGATGGTTCAAAAACGATTCATTGT
CAACCTACCAAAATTTTCCATACAAATTGTTAACAAAGATGGTATTACGA
ACCTGGGACAATTCACACCTAATGATATCACTGTGTAAGAATGACGAAAG
AAGAAACAGCAGCTTTATTGAAGAAAGTTCTTTTACAAGTTCCTTTCGCA
GCACACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCGCCATTG
GAAACCAGACACCGTACCAAGTCAATTTATTATTATCGGGCTTTGACGAA
AAGGAAGGACCTTCACTTTATCACATGGATTATTTAGCAGCCATGGTAAA
GGTTATGAACTAACTCCTCACAGTGGCGCTAACTTTGTAAGAAAGCGTCT
TGCAGACTTTCTCCGTAGCAGAATCTGGACAAACATGTCAGCTTGGGGAA
GAATTTTCTGATGACAATCAATGGAGAATCTGGTGATGCAACAAATTTTG
CAGAATACATTCAAAAAAATATTGCATTATACAAAATGAATAATGATGGA
ATTCTCAATTGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTTCTGATT
GCAATGGAGCAAGGAGCATTGTTCGCATGAAAGATGGTTCAAAAACGATT
CATTGTCAACCTACCAAAATTTTCCATACAAATTGTTAACAAAGATGGTA
TTACGAACCTGGGACAATTCACACCTAATGATATCACTGTGTAAGAATGA
CGAAAGAAGAAACAGCAGCTTTATTGAAGAAAGTTCTTTTACAAGTTCCT
TTCGCAGCACACGGTTATGGTGGTTTCTTCTCTTTGAGTACCCTCGATCG
CCATTGGAAACCAGACACCGTACCAAGTCAATTTATTATTATCGGGCTTT
GACGAAAAGGAAGGACCTTCACTTTATCACATGGATTATTTAGCAGCCAT
GGTAAAGGTTATGAACTAACTCCTCACAGTGGCGCTAACTTTGTAAGAAA
GCGTCTTGCAGACTTTCTCCGTAGCAGAATCTGGACAAACATGTCAGCTT
GGGGAAGAATTTTCTGATGACAATCAATGGAGAATCTGGTGATGCAACAA
ATTTTGCAGAATACATTCAAAAAAATATTGCATTATACAAAATGAATAAT
GATGGAATTCTCAATTGGTATTCAAGGAGCAGATTTTGTTTTGGTTGCTT
CTGATTGCAATGGAGCAAGGAGCATTGTTCGCATGAAAGATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11645MSTRG.11645Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11645.1.p1MSTRG.11645.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11645.1.p1.exon7MSTRG.11645.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11645.1.p1.exon6MSTRG.11645.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11645.1.p1.exon5MSTRG.11645.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11645.1.p1.exon4MSTRG.11645.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11645.1.p1.exon3MSTRG.11645.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11645.1.p1.exon2MSTRG.11645.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11645.1.p1.exon1MSTRG.11645.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:445277..451162 -