MSTRG.11640.1.p2 (mRNA) -

Overview
NameMSTRG.11640.1.p2
Unique NameMSTRG.11640.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:367479..372126+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11640.1.p2 ID=MSTRG.11640.1.p2|Name=MSTRG.11640.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4648bp|location=Sequence derived from alignment at sc0000085_pilon:367479..372126+ (Clytia hemisphaerica_ch_hm2_pilon)
tttaagcCTCAAcatttgaaattgttcttattaaaaaaaacagtgaaGCA
attttatatcttctatttactttagatttttaattattattcttttttgt
ctagttttGATCAGATCAAATGTTCCCttcaagtaaaattttcatCTACT
ATTATCATTATGGAAGAaccagaaccatcaaatttTTATGTTGGTGAGAC
TTTTACCAGCTTGGAAGATTTAgaatccaaaatcaaaatctttcagcaag
aaaattttgttcaaCTTTGGAAACCCGATTGTCGTCTTTTGGCATCTGCA
ATTAAGGGTAATCGACTGAGTAAAGCAAAGAAATGTGCTAACAAAAAATT
AGTTTATTCTGAAGTGAAATACTCATGTGTTCATGGTGGGCAAAAATTTA
CTTCACGTGGAACTGGTAAAAGAGCTTCCTAGTAAGTTTGATTATTATCT
TTCGCTACTGTAATCAATTTTCAGCCTTCTAGGATTATTCACACTCAACG
CTATaattaagcaaaaaaaaccCAGCAATATGGAGCTTGGATTTCGTCAT
CCCCCCgggtgggggggggtactagggcaaaaaaaGGTACAGGGaggctc
cgctggtcagggtacctttttcacctCCACCAGTCCCAcatagggtcgca
aaaacaccaaaatagaaaaatcagtcccttgtAGGGTAgctattttggaa
attttgggacaaaatcaggaaattttgagaaaagttgggaattttagtcc
cattcagggtcactttttttgcaaaaaatgagTCCCATGTAGGGTCCact
tttcgaacctcagcggagcacccctgtcggtcggcaagggtagtaccccc
ctcccGGGCGTCATGCTAAATGATATCCTTTCAATGGAATTAGTCTAATT
TCATTTGCTTGGTTTCCAtgttaataacaaaaaaacagcGTGACAACTTg
attttggttttgattttttctagtACTCTGAAGTCAGACTGCCCATTCTT
CGTTAGGCTAAGGTTATCCAAGAATGGCCAGCATTTGGAAGTCAAAGAAA
TTCTTAATAAACATAACCATGATCTCAATGAGGTAATAAAGTTATTTATC
AATGATTTGTATAACCGGACTTGTTAAACAATTTCAATTAGTTTTTGTTT
ATAAGTTGCAAATTTTAGAATTGGAATTTTTCCTTAATAGGTCAGCAATC
TTTGCAAAAAATAGAATCCATGTATAAAACTTACTTGCCAGTACCCGGCA
TCGCACATTGGTTGCTGAATGCAATTAAAGTTCTTTGGATGCTAAATTTT
GTCCCCCGAGAGTTATCTTTCCCCCTTCAAAGCATTTAATAATTATCTTA
AACCTTTTTGTGTTATGTGGTGCAATACCAAAAAGAAGGTAACTTTATTA
ACAGAAATATTGTTGGTATTTGTAACAAAAACATTCAATACAATGTAATT
GTTTTCACAAGCTGAAAGAACTTTCattatctttgttaaaaaaaattcaa
tccaTCAGAATCCATCCAAGCACCAGAGTAGGTTTCAGTGTATACCATGA
AAGTGTTGCAAATCTGATGTCCAATTCTTCAACAATGATTTGATTTAATG
TAACGCAACTAccacttcttttttttctgaaagaatttATTCAGGCATCT
TCCCCAACAGAGGAGACTgtcaaatgatgaaaaaaaaaggcAATACACAT
GATGGATCTCCAGGTCAACaaaaaaaTGCTGAAGAACCAAATTCAAGCGG
AGACTGGTAAGATGGTTCTTCTGAAAGATTTGAGTAACCTGGCGCAAAAG
AGTCAGAACAAAGATACATTTGATGATGTCATAAATATGCTAAGAAACCA
ATATGGTATGTATTTCATTAGCTTTTTAATGAGCACAAAAATTTCCTGTA
TTGTATGTTTGAAATAAGCGTACATCTAAGTATTTCTTTAGTTGTTTCTG
CATAAACCATATTGTCAGTATAAAGTGTCTCAAATTAGTGagtatttatt
tttagtatataaaaatcacaactttttttGCATGCCAAGATTCGCTTTCC
AATATCATTCTTTGCACTTATGGAAATATGAGTCATCAGGATTTTCACAT
AAAGCAGAATATTGACCACTTTATTCAAGACACACTATATCAAAGTCAGA
TATTAAACTTGATTTGTTAAGGGAATGATGTGTAGCTTATTAGTGACGAT
GACAACCTTCCTTCTTTTAGGTTGCACTGTGGAAATGAACGTGAGTGAAA
ATGGAGATTTTATCGGGCTCTTCTTTCAGGACGAGGTAATGAAGAaagat
tttgcttcatttcCAGAAGTCATGTGCATTGACGCCACATATAAACTACT
GGAAATTCGATTAccagtgtatatatttttagtGGAGGATTCGATGGGTC
TCAGTGAGGTAGTTGGGGTTTCTGTTTTGGTCAATGAGATGAAAGAGACA
ATCGTCTGGCTTATCGATACATTTAAAAAGCTGAACCCCAGTAAAGTCAG
AGTTGTAATGGCAGATAAAGATTTTAATGAACGTGACACCATTTCAAAAT
TATGGTGTTGTCCAGTGCTAATTTGCCTTTTTCATTCTCTCAAAGCTTTT
AAAAGGGGCATAGCTGACCTAAAAATATCCAAAACCGATTCAGACACAGC
CAAAGAACTGTTTGAAAAGATGTGTTATTCTTTTTCCATGGATGTTTACA
ATGACACGTACAAAGATTTGAAAGCTTTGGGAAACACGCAAATTTggaat
tatttctacaaaaattggcacccaattCGTCAGGACTAACCGTGTCAGAT
GTTTTAAAGCACTTCATGGTAACTTTCTAAACTCAACAAATAACAGATTA
GAAAGctttaattcaaaattaaaatctgttATTAAAAAGTATAGTTCCTT
TGAAGATTTTGTCAAAGGTTTTTTCATTGTTCTTTATACATTGAGAGGCG
AGAGAGATAGTATAGTTGCCAAAGTCAGCAACaaaaaaaGGGTATTTACC
AACACTACACCCTCTGAGACTGAAATTTTGATATCGTCCTACTTGACAAG
CTATTCTGCAGACTTTGTTATCAAGGGATTCAAAGCTTCAGAGAATTACA
AATTGAAAGAATCCAATGAGAATCTTGATCACGCTTGTACTTGCTATTTT
AACAAATCAATGAGACTGCCATGTAAGCATATTTTTGCTTATAGGGCAGA
AAATGATCTAAAACTTTTTGACCCTGATACTTGTGATCCTAGATGGTCTC
AAGAGTATTATTACCAGCATCAGAGATTATATACTCATCAACAAGATAAA
AACGAATCAACGATGAATCAACCAATCAGTGTTTCTGTATCCACGCCAAG
AGACTTGAAAAAGATGAACCACAATGAAAAGTTCCGAGAGGCTAATGACG
TTTGCACAAAGCTTGCTAATCTTGCATGTGAAGTTGGCAGTGATTCCTTT
GAAAGAAGACTCCATCTGCTCAAAGACTTACAAAGaatttgggaaaataa
tgaCGAAACAAGCCTTCTTTTCTGGTCGGGTATGTATGTGCCTGtacaat
tttcttttcattttcttaatcCTAGGATTGGGTCAAATTGTGTTTGTATa
atattttcatgaattactTAATCATTTCGCAGACGGTTCCTACATTCACT
CAACGATATTGTTTCATTATAGAACCACAGCATGTAAACAATAGCAATGG
AGAAAATGCTACTGACAAGACTACTGGTAGGTTAAAAAATGTTGcaattt
gtttttcttgtgGTAggcTtttttgaagttttttgaagatgttcattttg
aaaatcatcATCAAATGAGTTTATGTCCCTGTGTTCATTATAGAATCACA
ACACTTAAAAGCCATCAGGGAAAATCTAGAGAAGACTGTTGACCCACCAT
CTGGTAAGTTTGATGTTGTATATTTATCACCGTGTAGAATATCATTTTGT
AGTTttaatttcagcaaaattttgtattttggaATTAGTCTTTTCTCGAG
TTTGACAAACCCTATATTCATTCTCAAACTGACCTGAACCATTCCGATGT
ATAAAATTTCttgattgaatttttattatgatttttacaaaagatCCAGA
TCCAGAATCGGAGATATGGTTTGGAAGTCAGGATTCTCTACTAGATTCTT
TGAATGGTACATCtccttttattttgacttttggttttcgcctataatct
tttatgGttcatgtggtatttttatttacttGacaCCTATTAAAACTTTT
TAGAAGGGATAATATAATCACAAATAAGTTAAACTTATAAGAttaaactc
tttttttataacttAACATTTTTAGAAGAGATTCGATTGGATGCTACCAA
TGTTATAATCAGTACAAGTGAGATTTTATTACTACATCGATTTCAACCTT
TActttaagttgtttttttcaacaCTATCTTTTATGAGAAAAGAGAAATG
GATTTGGTGCCatattgtatttttaaatcaaatatttcaagctCTCATAC
TAAAATGATTTCTTTGTTTGTACTGTAGTGAGCCTAACCAAAGGCCAGAC
TGTTATTGCTATAAATACATGtattacaaattatttttcctGATAGGTTC
TCAACTTCAAACGCCTTGCACAAAAGATGGATTGCAATTGCAGAATGG

Coding sequence (CDS) from alignment at sc0000085_pilon:367479..372126+

>MSTRG.11640.1.p2 ID=MSTRG.11640.1.p2|Name=MSTRG.11640.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000085_pilon:367479..372126+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGACTGCCATGTAAGCATATTTTTGCTTATAGGGCAGAAAATGATCT
AAAACTTTTTGACCCTGATACTTGTGATCCTAGATGGTCTCAAGAGTATT
ATTACCAGCATCAGAGATTATATACTCATCAACAAGATAAAAACGAATCA
ACGATGAATCAACCAATCAGTGTTTCTGTATCCACGCCAAGAGACTTGAA
AAAGATGAACCACAATGAAAAGTTCCGAGAGGCTAATGACGTTTGCACAA
AGCTTGCTAATCTTGCATGTGAAGTTGGCAGTGATTCCTTTGAAAGAAGA
CTCCATCTGCTCAAAGACTTACAAAGaatttgggaaaataatgaCGAAAC
AAGCCTTCTTTTCTGGTCGGAACCACAGCATGTAAACAATAGCAATGGAG
AAAATGCTACTGACAAGACTACTGAATCACAACACTTAAAAGCCATCAGG
GAAAATCTAGAGAAGACTGTTGACCCACCATCTGAAGAGATTCGATTGGA
TGCTACCAATGTTATAATCAGTACAAGTTCTCAACTTCAAACGCCTTGCA
CAAAAGATGGATTGCAATTGCAGAATATGAGACTGCCATGTAAGCATATT
TTTGCTTATAGGGCAGAAAATGATCTAAAACTTTTTGACCCTGATACTTG
TGATCCTAGATGGTCTCAAGAGTATTATTACCAGCATCAGAGATTATATA
CTCATCAACAAGATAAAAACGAATCAACGATGAATCAACCAATCAGTGTT
TCTGTATCCACGCCAAGAGACTTGAAAAAGATGAACCACAATGAAAAGTT
CCGAGAGGCTAATGACGTTTGCACAAAGCTTGCTAATCTTGCATGTGAAG
TTGGCAGTGATTCCTTTGAAAGAAGACTCCATCTGCTCAAAGACTTACAA
AGaatttgggaaaataatgaCGAAACAAGCCTTCTTTTCTGGTCGGAACC
ACAGCATGTAAACAATAGCAATGGAGAAAATGCTACTGACAAGACTACTG
AATCACAACACTTAAAAGCCATCAGGGAAAATCTAGAGAAGACTGTTGAC
CCACCATCTGAAGAGATTCGATTGGATGCTACCAATGTTATAATCAGTAC
AAGTTCTCAACTTCAAACGCCTTGCACAAAAGATGGATTGCAATTGCAGA
ATATGAGACTGCCATGTAAGCATATTTTTGCTTATAGGGCAGAAAATGAT
CTAAAACTTTTTGACCCTGATACTTGTGATCCTAGATGGTCTCAAGAGTA
TTATTACCAGCATCAGAGATTATATACTCATCAACAAGATAAAAACGAAT
CAACGATGAATCAACCAATCAGTGTTTCTGTATCCACGCCAAGAGACTTG
AAAAAGATGAACCACAATGAAAAGTTCCGAGAGGCTAATGACGTTTGCAC
AAAGCTTGCTAATCTTGCATGTGAAGTTGGCAGTGATTCCTTTGAAAGAA
GACTCCATCTGCTCAAAGACTTACAAAGaatttgggaaaataatgaCGAA
ACAAGCCTTCTTTTCTGGTCGGAACCACAGCATGTAAACAATAGCAATGG
AGAAAATGCTACTGACAAGACTACTGAATCACAACACTTAAAAGCCATCA
GGGAAAATCTAGAGAAGACTGTTGACCCACCATCTGAAGAGATTCGATTG
GATGCTACCAATGTTATAATCAGTACAAGTTCTCAACTTCAAACGCCTTG
CACAAAAGATGGATTGCAATTGCAGAATATGAGACTGCCATGTAAGCATA
TTTTTGCTTATAGGGCAGAAAATGATCTAAAACTTTTTGACCCTGATACT
TGTGATCCTAGATGGTCTCAAGAGTATTATTACCAGCATCAGAGATTATA
TACTCATCAACAAGATAAAAACGAATCAACGATGAATCAACCAATCAGTG
TTTCTGTATCCACGCCAAGAGACTTGAAAAAGATGAACCACAATGAAAAG
TTCCGAGAGGCTAATGACGTTTGCACAAAGCTTGCTAATCTTGCATGTGA
AGTTGGCAGTGATTCCTTTGAAAGAAGACTCCATCTGCTCAAAGACTTAC
AAAGaatttgggaaaataatgaCGAAACAAGCCTTCTTTTCTGGTCGGAA
CCACAGCATGTAAACAATAGCAATGGAGAAAATGCTACTGACAAGACTAC
TGAATCACAACACTTAAAAGCCATCAGGGAAAATCTAGAGAAGACTGTTG
ACCCACCATCTGAAGAGATTCGATTGGATGCTACCAATGTTATAATCAGT
ACAAGTTCTCAACTTCAAACGCCTTGCACAAAAGATGGATTGCAATTGCA
GAATATGAGACTGCCATGTAAGCATATTTTTGCTTATAGGGCAGAAAATG
ATCTAAAACTTTTTGACCCTGATACTTGTGATCCTAGATGGTCTCAAGAG
TATTATTACCAGCATCAGAGATTATATACTCATCAACAAGATAAAAACGA
ATCAACGATGAATCAACCAATCAGTGTTTCTGTATCCACGCCAAGAGACT
TGAAAAAGATGAACCACAATGAAAAGTTCCGAGAGGCTAATGACGTTTGC
ACAAAGCTTGCTAATCTTGCATGTGAAGTTGGCAGTGATTCCTTTGAAAG
AAGACTCCATCTGCTCAAAGACTTACAAAGaatttgggaaaataatgaCG
AAACAAGCCTTCTTTTCTGGTCGGAACCACAGCATGTAAACAATAGCAAT
GGAGAAAATGCTACTGACAAGACTACTGAATCACAACACTTAAAAGCCAT
CAGGGAAAATCTAGAGAAGACTGTTGACCCACCATCTGAAGAGATTCGAT
TGGATGCTACCAATGTTATAATCAGTACAAGTTCTCAACTTCAAACGCCT
TGCACAAAAGATGGATTGCAATTGCAGAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11640MSTRG.11640Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11640.1.p2MSTRG.11640.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11640.1.p2.exon1MSTRG.11640.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon2MSTRG.11640.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon3MSTRG.11640.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon4MSTRG.11640.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon5MSTRG.11640.1.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon6MSTRG.11640.1.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon7MSTRG.11640.1.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11640.1.p2.exon8MSTRG.11640.1.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:367479..372126 +