MSTRG.11627.2.p1 (mRNA) -

Overview
NameMSTRG.11627.2.p1
Unique NameMSTRG.11627.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:80229..85487-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11627.2.p1 ID=MSTRG.11627.2.p1|Name=MSTRG.11627.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5259bp|location=Sequence derived from alignment at sc0000085_pilon:80229..85487- (Clytia hemisphaerica_ch_hm2_pilon)
TTCAGTTGAAGGGTGCAAAGGTTTGCTTGTTGGCCATCCATTTAAAAACA
TGAAATATTTTTATAAAAAAGGGTAAAAGTAAAGTTTTGTCACACGACAC
ATAAAGAAGTCATCTCGTCAACACAAATCGCGTTATTTTTACAAACGAAT
GTTAAATATTTTTCTCCATTAACATCCATTTGAAAAACATTTACGTTTAG
TGTGTTTTTGAACTGTCTGTGTGGTACGATTTTTATTTTCATTCATAAAA
AGATTTTTTTCTTTCGTTACTACGACACTTCACCTTGAAAATAAACACAG
GACATCTTTAGCGATTAGTTAAATTTATTCATTTTTGCTGTATATCAAAC
ATTGTAAGAAGCAACAAGATGGTAGTCCGAAGACAAGGTAAGATTTTTTC
AAAACACCCCTGTCCCACAGTCCCAGTAGGAATTTTTTTTCACAAAATCT
ATACAGAAATCCCAATGGGAATAGAAATCCTATTGTTCGAAAAATCTAGT
GGGGTGGGTTTGGAGGCTGATTTTTTCCTTGAATTTCAATGAGGATGGGA
CGAAATTCAATTTCCCAGTGGGACAGGGGTCAAAGCTGGTCTATGACACA
GGGGTGTGTCAAAGATTGTCAATAAATTCCAAGTATGGCGTTTGCCTTCA
TATAAAACTCGTATCGTATTGAACACATAAACTTGTATCGTATTAACTCT
ATCTCACTGACTCACTGAGACAGGGGTTTTAAATGTCCTTTGCACACATA
AATTCCAGGGTGAAAGATAGAATTAACAGCAAAAGAACACCTATCTGGCA
CTCATCGCAGCCACACCTAACAGTTTGTCTTTCGTGAACTGTGCTACAAA
AACACCATATAGGGGTTGTTGTAGAAAAATGTAGAAAAATTTGAAGTCAA
ATATCTTTTTCCAGGATACCTTCTTCTCTTTGTTGTTGTGGTCAAATTAT
GTCAAAGCGTTCCCATAACAACCACAACCCAACAACCAATCACAAATCGT
CCTCACAAAGATTGTTTTCCTTCGGGATTCGAATTCGCTTATGATGACGT
CATCGATCATGGGAATTTCCCTAATGGTGAAACATGTTGGCAAATTACTT
GTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACACCTTGCGAAAAAGTG
ATGACTCAGCGAAAACCTACAGCAAAACCTTCAGAAGAAAAACAAGTAGA
AAACCAATGCATTTTCAATGGAAGAAAATTCAACCCAGGTACATACATAA
TGTTTAATTACATGCTTTTCATATAAGGAAGATTTGAGCTGTTTTAGGTT
AAAAATGCCGTAATATGATTACTTTTGGACACACCGGGGTCGTTCAGACA
TGTATTTAAATTCAATTTAGCTGCTGACTTCAATGCAAACATAACTGTTA
TGACATATGAAGGGGACATTTGACCTTGTAAAAAATTTAAGATTATCAAT
CTAATGGTTTCAAATTACACCTGAATAAAGGTCCCAGTATTGTGCTAAAA
ACCTTTTGTCGTCATCAGGTAGAAACTGAAAATAATTTTGATACCTATTG
TAGTTCAATTTACAAACATTTTATACAACTTTTTGAATGTAGCTGCCAAT
TGCCGCGCGGGCATTTTTTTTGTCCGTTTTACCACCCTAAACAGGGCCCC
GGTTTGAGGGCTGCAGTGAGGGGGCCAAATATTGGGGTAAATTGGCGTTA
CCCAATTTTGAGTTTTGAGGGGTTAACTTTTTCAGGACGGCCCCAGCTAA
CTTCGTTCCTTTTGGAACAATACTTTTCGGCTGCCGTAATTTTTTGTAAT
TTAAAAATTTGGCACGCTGAATAAATAGAGCATTAAAACGAGCTTTCCAA
CGAACCCAAACATGACATATTTAGATTGTTTTAAAGCTGAGATAATTGCA
TCTGAAGTTGGAACTTCTAATGAAATGTAACTGAAAGTTTTCAAAATAGA
CTTTCTCGGAAAAAAAGTGAGGAGCCATGCCCCCTGCCCCCCCCCCCTAT
TCTAAAACCGACCCCAGTCTTTTTTCGCACCTAAAGACAATAGAAAATAG
AAAAAAGTGTAAGAAAAGGATTGGATCAAGTTTAGGGTGGCACGCACCTG
ACCACACGACTATGGTCGAAAAGGTGCATTACATAACATTAGAAAGATAA
TCTATTTTCCTTAAGAAATACCCGCCAAGTTACCGAGATCCTAAACTAGT
AGTTTAAATCATAAGGGTTGAAAACGTTACTTAAATTTACATGCTAAATC
TTAATCATCGGGTGTGTGATCATTAAAAAACTGGTTTGCTACTTTGAGGA
ACTTAGAAAAAGCCTTCCAGGATCTGGCTGTGACACTCACTTTGCACCAA
TCCAATAATGTCGGGGTCGTACCTACATGCCATTTTTGTATCGATTAGAA
ATGTTGAAAAATCGTCCGATTGAGCTCTTAAGGGCTCTGACCATAGTCCA
AAAATTGATTTTAGTATTTGAACATAAAAGTTATATTTCAGGTTCCTTAA
CACTTTAACAAAGAATTGCCTTTATAAATTGCTTTTTAATTGAATCCCTT
AAGAGTAATTAAGAAATTAATTGCAAAAATGACGTTATGAACTTTAAAAA
GATCTTAATAATATGTTGCATCACCCTCTTTTACAAAAAGTGTTTAGTTT
TAATGGGTAATTAACTTTTTTGTTTCAAAATTTCTTTACCCTGTCCGCAA
AGAATTGAACTATTTTAAATTTTGCGGAAAATTTTTCTAAAAAGATGTGT
CAAAAGTTATGACTGTTTTTTTAAGCAAAATCCAGATGAAAAATTGATGA
AAAACCACTATTTTGAAGATTTCGAGACAAAGAAGCATTTACAAAAATTT
TCCGCAAAAATTTTTATTGTTCGGTAAAAGATGCACCATCTACTGCGAAA
AATTTTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTGA
AATACTCTTCCTCGCAAAAGTCTTCATTTTCTTCTTCATCAAATCTTTTC
AATGCAATTTTTGAATTTTCAGATTCAGGAATAGTTTGTCTAACAGAAAA
TGTATAACATGCCATAGTTTTGTTGGTTACATCAATCAGAAAACACATTT
TAAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTTAAAAGTC
GTTTGTTTGTTTTCTAGGGGAAGACATTCAGACGCTCTCTGATTGGCAAT
CTGACCGTTGCTATGGTACCCGATGCAGTAAAGATGGTACCATAGTTGCA
TGGGAAAACATCAATTGTTATTCCACACCTTACTACAGCACTACGGAGAA
GGGTGGTAGTGTCCAAACTCCCGAGTTTATTACCACTCCATCGCATGTAG
AATTATCAACAACTGAAGCTTCTGGGTGTTATGAAAATAGTGTGACTTAC
CAACCCGGTGAAGAGATTAGTTTCCAGTACTTTACGGAAAATCAAACGTG
TTGTGGACGCTATTGTAATTATAGCAATAAAATTGTTTCTTGGGAAAAAT
CCGAGTGTGAACAAGGAAAATCGACTGTCGAGCCTACTTCGCAAATTACT
ACATTTGGTTCAACCACAGATACGGATCAAGGATGTTATACAAATGGCAG
AGCGTACAAGCCAGGAGTACACATCGATTCAGGTAATGATGGTTCAAGTT
GGTGTTTCGGTCGATATTGTAATGAAAACTCTGTTATTGTCTATTGGGAT
GATTTCCATTGTGACGTTAAATCTTCTAAAAAGCCGTCACTGATTATATC
AAAATATGACTTCACAAAAACACCGATGACATCAGAATATGACGTCACAA
AGCAACCAGTAACGTCAACTAGTGACTTAACAACGACTTTGATCACATCG
ACAAAGTTTGATGAAATTTCAACATTAGATCCTAACCATTTGAGTACATC
AAGTGGAGGCCTTTCTACTACTACAGAGGAGGAGGTTAGGACTGAACAGC
CACCAGTGGAAGGCTCTCTATGGGAGCAACTTCAGTTTTTAGTGAAAAAC
AAACTATATTCAACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGA
TGGGAAATATCAAGTGAAACTGTCTATTTTCAAAAAGAAATCATAAAACG
CACTATAGATTTTTATGAGCTAAGCATGGATTTGAGCTTACAAGCAATGG
CACAAAAAATGCTGATTGTAATTTCACACTTTGTTGAATCGATGCCTCAG
AAGTGGCACCCCTGTGTCACAGACCCACTGGGACCCAAGCCCCACTAGAA
TATTAAAAAAGTTTCTTCCCCGGTGAGAAAATGCCCTGGAATTTCAGCCC
CACTTGGAAATTGACTTTTATTTCATCACCACTCGAAAATTCGATGACTA
AAAAATACACTCCAAAACCATCCCCACTGGATTTTTGACCTTGGAAGAAT
ATAATTTTTATTCTTATCAGGATATTCATAGGTATTTTTTCCCCACTGAG
GAAAAAAAATTCCACGGGGCTGTGAGACAGGGGTGTGAAGTGGCACATTA
TTCAACAAATGTTTCGCGACATTTCCGTATCAATCGAAGTAAAGTTAATG
TTAATGACACATTTGAAGATAAATCATCCTTCATATACTAGCGAGCCTAA
TAAACCTTTTCGACCGTAGTCGTGCGCGGTCAGGCGCGTGCCACTTTATT
ATTTAGTTTACCACGCTAAACTCGATCCAATCCTTTTTTTAACACTTTTT
TCTATTGTCTTTAGGTGGTAGGAAAAGAAGACTGGGATTTTTTTAAGGTG
GTAAAACAAACAAAAAAATTCCCACGTGGCAATATTGGCGGCTACAGCCG
AAAAGGTGTATCAAGAACCCTCTGATAGTCAAAAAATTTGATTCGTTTAT
AGTAGGTATTACTGTGAAGGGTATAATCATGGACGAAAAGGGCGAGACAA
GAATATAAAGCTTCACTCCCTCCCTCCACCAGTGGCAATGTTGAAGGGCA
GTGGAAATGTCAGTGGGATGGCCATTCGAACTCAACATTTCCGCTTGGGG
AAAAACTCGGGGGAAAGGGGGGGGGACTTTTCCATAGTTTTCCTAGCATT
TTCCTGTGTTTTTCTCAAACATTAAACTCTAAGCTTTTCCAAATCAAAAA
AAAGGGAATATCGCAAAAAGTATTGTTGCTATTGATTTTTAAAAACCCGA
AAAGGTTCTTATTGGTCAAGCACCGAAATTCTATTGTAATGTCACGTGAC
CAAATAAGGATTTCCTACCGAACCACGGCACACTTTTCAGCCAAAACACT
ATATCTAGC

Coding sequence (CDS) from alignment at sc0000085_pilon:80229..85487-

>MSTRG.11627.2.p1 ID=MSTRG.11627.2.p1|Name=MSTRG.11627.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3816bp|location=Sequence derived from alignment at sc0000085_pilon:80229..85487- (Clytia hemisphaerica_ch_hm2_pilon)
GGGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCTATGGT
ACCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATCAATTG
TTATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGTCCAAA
CTCCCGAGTTTATTACCACTCCATCGCATGTAGAATTATCAACAACTGAA
GCTTCTGGGTGTTATGAAAATAGTGTGACTTACCAACCCGGTGAAGAGAT
TAGTTTCCAGTACTTTACGGAAAATCAAACGTGTTGTGGACGCTATTGTA
ATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAACAAGGA
AAATCGACTGTCGAGCCTACTTCGCAAATTACTACATTTGGTTCAACCAC
AGATACGGATCAAGGATGTTATACAAATGGCAGAGCGTACAAGCCAGGAG
TACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCGGTCGATAT
TGTAATGAAAACTCTGTTATTGTCTATTGGGATGATTTCCATTGTGACGT
TAAATCTTCTAAAAAGCCGTCACTGATTATATCAAAATATGACTTCACAA
AAACACCGATGACATCAGAATATGACGTCACAAAGCAACCAGTAACGTCA
ACTAGTGACTTAACAACGACTTTGATCACATCGACAAAGTTTGATGAAAT
TTCAACATTAGATCCTAACCATTTGAGTACATCAAGTGGAGGCCTTTCTA
CTACTACAGAGGAGGAGGTTAGGACTGAACAGCCACCAGTGGAAGGCTCT
CTATGGGAGCAACTTCAGTTTTTAGTGAAAAACAAACTATATTCAACTGT
AGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAAATATCAAGTGA
AACTGTCTATTTTCAAAAAGAAATCATAAGATACCTTCTTCTCTTTGTTG
TTGTGGTCAAATTATGTCAAAGCGTTCCCATAACAACCACAACCCAACAA
CCAATCACAAATCGTCCTCACAAAGATTGTTTTCCTTCGGGATTCGAATT
CGCTTATGATGACGTCATCGATCATGGGAATTTCCCTAATGGTGAAACAT
GTTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACA
CCTTGCGAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTCAGA
AGAAAAACAAGTAGAAAACCAATGCATTTTCAATGGAAGAAAATTCAACC
CAGATGGTAGTCCGAAGACAAGGGGAAGACATTCAGACGCTCTCTGATTG
GCAATCTGACCGTTGCTATGGTACCCGATGCAGTAAAGATGGTACCATAG
TTGCATGGGAAAACATCAATTGTTATTCCACACCTTACTACAGCACTACG
GAGAAGGGTGGTAGTGTCCAAACTCCCGAGTTTATTACCACTCCATCGCA
TGTAGAATTATCAACAACTGAAGCTTCTGGGTGTTATGAAAATAGTGTGA
CTTACCAACCCGGTGAAGAGATTAGTTTCCAGTACTTTACGGAAAATCAA
ACGTGTTGTGGACGCTATTGTAATTATAGCAATAAAATTGTTTCTTGGGA
AAAATCCGAGTGTGAACAAGGAAAATCGACTGTCGAGCCTACTTCGCAAA
TTACTACATTTGGTTCAACCACAGATACGGATCAAGGATGTTATACAAAT
GGCAGAGCGTACAAGCCAGGAGTACACATCGATTCAGGTAATGATGGTTC
AAGTTGGTGTTTCGGTCGATATTGTAATGAAAACTCTGTTATTGTCTATT
GGGATGATTTCCATTGTGACGTTAAATCTTCTAAAAAGCCGTCACTGATT
ATATCAAAATATGACTTCACAAAAACACCGATGACATCAGAATATGACGT
CACAAAGCAACCAGTAACGTCAACTAGTGACTTAACAACGACTTTGATCA
CATCGACAAAGTTTGATGAAATTTCAACATTAGATCCTAACCATTTGAGT
ACATCAAGTGGAGGCCTTTCTACTACTACAGAGGAGGAGGTTAGGACTGA
ACAGCCACCAGTGGAAGGCTCTCTATGGGAGCAACTTCAGTTTTTAGTGA
AAAACAAACTATATTCAACTGTAGTCGAGGATTCTGGTTTAACGAAATCA
AAGGATGGGAAATATCAAGTGAAACTGTCTATTTTCAAAAAGAAATCATA
AGATACCTTCTTCTCTTTGTTGTTGTGGTCAAATTATGTCAAAGCGTTCC
CATAACAACCACAACCCAACAACCAATCACAAATCGTCCTCACAAAGATT
GTTTTCCTTCGGGATTCGAATTCGCTTATGATGACGTCATCGATCATGGG
AATTTCCCTAATGGTGAAACATGTTGGCAAATTACTTGTGGTCCGTCGGG
TAGATTGATCAAGTCTTTAACACCTTGCGAAAAAGTGATGACTCAGCGAA
AACCTACAGCAAAACCTTCAGAAGAAAAACAAGTAGAAAACCAATGCATT
TTCAATGGAAGAAAATTCAACCCAGATGGTAGTCCGAAGACAAGGGGAAG
ACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCTATGGTACCCGA
TGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATCAATTGTTATTC
CACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGTCCAAACTCCCG
AGTTTATTACCACTCCATCGCATGTAGAATTATCAACAACTGAAGCTTCT
GGGTGTTATGAAAATAGTGTGACTTACCAACCCGGTGAAGAGATTAGTTT
CCAGTACTTTACGGAAAATCAAACGTGTTGTGGACGCTATTGTAATTATA
GCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAACAAGGAAAATCG
ACTGTCGAGCCTACTTCGCAAATTACTACATTTGGTTCAACCACAGATAC
GGATCAAGGATGTTATACAAATGGCAGAGCGTACAAGCCAGGAGTACACA
TCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCGGTCGATATTGTAAT
GAAAACTCTGTTATTGTCTATTGGGATGATTTCCATTGTGACGTTAAATC
TTCTAAAAAGCCGTCACTGATTATATCAAAATATGACTTCACAAAAACAC
CGATGACATCAGAATATGACGTCACAAAGCAACCAGTAACGTCAACTAGT
GACTTAACAACGACTTTGATCACATCGACAAAGTTTGATGAAATTTCAAC
ATTAGATCCTAACCATTTGAGTACATCAAGTGGAGGCCTTTCTACTACTA
CAGAGGAGGAGGTTAGGACTGAACAGCCACCAGTGGAAGGCTCTCTATGG
GAGCAACTTCAGTTTTTAGTGAAAAACAAACTATATTCAACTGTAGTCGA
GGATTCTGGTTTAACGAAATCAAAGGATGGGAAATATCAAGTGAAACTGT
CTATTTTCAAAAAGAAATCATAAGATACCTTCTTCTCTTTGTTGTTGTGG
TCAAATTATGTCAAAGCGTTCCCATAACAACCACAACCCAACAACCAATC
ACAAATCGTCCTCACAAAGATTGTTTTCCTTCGGGATTCGAATTCGCTTA
TGATGACGTCATCGATCATGGGAATTTCCCTAATGGTGAAACATGTTGGC
AAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACACCTTGC
GAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTCAGAAGAAAA
ACAAGTAGAAAACCAATGCATTTTCAATGGAAGAAAATTCAACCCAGATG
GTAGTCCGAAGACAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11627MSTRG.11627Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11627.2.p1MSTRG.11627.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11627.2.p1.exon3MSTRG.11627.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11627.2.p1.exon2MSTRG.11627.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11627.2.p1.exon1MSTRG.11627.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:80229..85487 -