MSTRG.11618.1.p1 (mRNA) -

Overview
NameMSTRG.11618.1.p1
Unique NameMSTRG.11618.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:1313407..1320534-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11618.1.p1 ID=MSTRG.11618.1.p1|Name=MSTRG.11618.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7128bp|location=Sequence derived from alignment at sc0000084_pilon:1313407..1320534- (Clytia hemisphaerica_ch_hm2_pilon)
GCCTGACCCAAAAAATTGGAGTTGCTAATTAAAAAATTTTAGATTCTTCT
TATATTGTAGTTTCTAAGTCAACATGTTTTGGTTGTAAAATAGGATAAGT
CATTGGATGTTTTTTCCGGAACTAAACTTGACTGATCAGCGATGACCCAA
ATTTAAAGGTCATTATTTCCAATTAGCTATTGTTTTGCAAATTATAATTA
ATAATTAATTAATTAATCTAACGGTTTCGGTATACTAAATTTTGGTCAAC
ACACCCTTTATCAGTGAAAGTGTGTAGGAGGTCCAAATGATGCATTACAT
TGTAAGGTTATATGTTTTTTAATAAGAGCATCTAAAACTCTTGAAGCCTT
CGGAACTTTTAAGCCTAAAAACATTCTAAACATGCCAACATTTTTTCCCA
TTATCCTAAGAAATCAGGTGTTTTAGAGTCCGCAAAGCCTTAAAATGTTC
ATAACTTATTCTTAATTTTTTAGCCATCGTAGCCTTATCTTCTTATATAA
CTTGTTCTTGTAAACATATGTTCATTATAACGTATGATGCATTAGATTCA
AATTTTTCCTGTATCAATCAGACGAATATTTTCCCCTATTTTCAGAATGT
AGTGTAACGTAATGGTTTTGACGTTTAAATCTACGTGTTCGAATTCTGTA
TGTGGGTGGAAGCATGTTTGAGTCTAATTGACATTACAGATACTAATCAT
AATAGTTTTGACTGCTTATGAGTTATATCACACACTAGTATCATGGTTGT
TCATCCCTAGCAGTGCCGTATCAACTGGGCCCCCCAACAATTTTTTCAAA
CACTGTTATTTTGCAAAGTTTTTCTTTTTTAATTTGTCATAATTGTCAAG
CATTTTGTTTCAGTGCATTTTCAAGCAATCTAGAGCTCAAATTTTCGAAA
CTTTCCCCCTCGGGCCAAACCAGGGTTGGCCCTCGCGTTGTCACTAAACT
TAAGCCCCCCCATATGAAAATGCTTCCTACGGCACTGCCTAGTATTGTTT
TACATCTAGAAGAAAGTAATAACTTTACAGAAAGAACGGGCGTGTAGTAT
TGAACTAGGTTTTAATGAAAGATCTAGGCGGGTCTATAAAATTATTCCTA
ACTTTGAAGGCAACTTTGGGCTTTCTGATAGACTTGATGATAGTGAACTG
GACTCAGCGCCGTAAAAAAACTCATCAAAAACAAGGTTCAGTCAGAAATA
AACAGTAACCTATTTCTTGAAATTGACTGATTTTGGAAGATTTCCTAGAG
GGCGTGTCAAGGGGAGGACTAAGGGCGTGCTGAATGAACTTTCTTGGAAA
CGTACAAAGCTTACATCATAACCAAAACAAACATGTAATTGTCGGCCTTA
GTTTAAATTATCAAGATGAAAATATTTTTTCTACTTCACAATCAACAGAT
AATTATTATTCAATTATGTATAATAATTGACCTATTTGTGGTTTTTCTTT
CTCAGATATTTTGCTTTCTCCAAAGTATCGCTTCCCAAACAAATAAACAA
ACAAATGATGGAGGAAAATGTCTGGACGTTTCTTTCTTGAGTATAGGAAA
GTTTTGTTCAATAGCCTATCACAACATAAGCGTGGGGTGAAAGTTTAAAG
TTCATAATAAACCACTTAGCCCTATTGATCGAAGGACGTCATCGAAGGTG
GGGTTCAAAATTGGTTCAGAGTCCAACAAGTTCCAGCTCCCATTCATCAA
CGGTTCATATGATCAGATTTGATCTTCCGTTAGCCATTTGGCTTAACACG
TAACCCATACGAGGGCGTGGATATGAAATCACCAAAGTAAACAATGGTAC
AAAATTCCAAAATGACACGCCCTCTGTTATCATTTTAGGATACACGTTTT
TTTTATAACAAAGAACTATATATGAACATAAGGCTATCATGGCCAAAATT
TTAAGAATAGGTTAACAACATTTTAAGGCTTTGTGGACTCTAAAACACTC
GATTTCTAAGAAAAATGGACAAAAACACCCACAAAATGGTGAAAATGAGA
ACATGCTAATACATTTTTAAGCTTAAAATTCAAAAAGCTAAGAACAACCG
AAAGCTTCAAAAGTTTTGGATGTTCTTATAAAAAACGTGTATCATCATTC
AAGTCAAGGACTTCTTAGTAATTTCGCATTGAAAGAGATGCACGTGACGA
AGACTGCACCCCTTAGTTTTTGTAAAACAAACCTCAACACGGTTGGAAAC
CTTCCAAATCTCAAAATAATGATTAAGATTGAATTCAGAAAGCATTCGAG
TTATTCAACAAGTATTCCCTTTTAAATGACTTTATTTTAAACTCATAAGT
TTTTATGTAGTAAGTCACTTTCCTGTGACATGCTATGATGTTACAGGTGT
GTCTCTATTGTGTAGGGGCTTACAAATAAAACAGGTTGTTTCTTTATATG
AAATATGTCTATTTTATTGAGCTTAAAGCCCAAAGGGGCTAGAGATGAAT
CTTTAACCTTTCTCAAGCAAGATAAAGTGAAGCCTTAAGATTTTCTCCGC
ATTTTCAATGGCAGATCCAATCTAGCTTTTCCTTTGTTTTTAAGCTGCAT
ATTTTTCGAAATCTGGCGATAGGTTTTACTTTTGATCTGCCGCGGCGTTT
GTGTGAAAACCACGCGGGTCACGCGTGCTTTGGATGGGAAATAAGTGGTT
TCATTTCCAATCCAGGAGTATCGGGTCTAGCCCCATCGGGACTTTGAAGT
CAATGATGTCTTCTGATGGAGTCTTTGGCTGAAAATTGATATAACAAGAA
GTTTCATAGTTCGACTCTTTAGCGACATAAGCTCTACTTTTGTGTGCCTA
CTTAGTGTTCCCTGCTTCTTTTTTTGTTTTCATGAAATTTCTCACCCGAT
AAATCCTTATTCTAATTCCTTGCTACCAATAGGTACTAAAGAGTAGCTTC
ACCCCTGTCTCAGTTCCCTAGTGACGTTTGAAACCCCGGTTTATGTAGAT
TTGGTCGGGATAAGCCCAACGGGGTGATATGACCCACTTTTTGCCAGGAC
GAAGACATTTTATTGGAATTTTGAACGTTTTTCATTCGAGATATCAGAAT
CGTCATAGATATGAATTTCTAAGGGGTTAATCAGTATGTTTACGTTTATC
TATCAGGCTGAAGAATTCAATATCTTTTTTTTCTGGGATGACTGTTTTTC
ACCAGAGCTCTTAAGTTAAGGCTATTCTGAGAATGTTTTGGTGCAGCTAC
GTATAGTCGTCTGTCAAGGTCAACATTGAAATGTGCATGCGTAAAGGATG
TTCCCATAAGGACTCCTTCATCGAAACTTTAAATAATACGTTTCCATCAG
TTTATCAAAAATTACTTCAAAGGTTGACAACAATAACAAGAACAAAAACA
ACACAACGAAATTTGATATATATTTAAACAGATTTCATAAAAGCCAACTT
AAGATCAGATTAAAGATATCGCAATGACGTAGATATAGGTGAAAGAGGCA
CATACTTTCCCTAATCTCCAATTACAATTGTCACAACAAAGATTACAAAT
GTTTTCAAAACCTTAAAATTTTCAGTTTTGTAACCAAGGGTTCTGTGGTG
TACTTTTTTGTTTGTCCCTGGGCGTTATTGACAAAATAAGTCACAATGAT
TTTGTCACAAGTCAATTAGTAATGCCATGAAGTGTAAAAGGATTAGGGTG
AGGTGGGGTATTTCAGGACATTACAACGCTAGAAAATTACTAATCAATCA
GTTGATCAAAAATTAAGCTGTATTTTGCTTTTTTTTTGTGCAATACGGTG
TTCTCCTTCGCTAAAAGGGAATTCCCACCAGAAAGAATTCCTGGTATAAA
TCATATCTATAACTTCCTTAATAGTAAGGTTGAGCTAGATTCCAAAGTTA
AGCACGAGGCTACGTATCGTGTAATTAACATGTGTTCAAATTATACATAC
GATTTCGAAAATACAGATTCTTAAAATATACGGGAAGGGTCGGACCAGGA
AGAATTCTAAAAGCCTTTGGCTATTGAACAGAGAGGTTTATTACCAAAAA
GCTGTAATTTACTTTTGATACCGGTGGATGTGGGGGATCCCCTTATCACT
GAAGGGAGTTTTTAGAGAATTAATTTCCTGGTAAAATGATGAGCAATTTC
ATTTTTAAAGAAACTTGGTAGAGAAAGCATGACTGTATACACGTGGCTAT
TTTAGTGGCCATAGAAAAGTCTTGAGAAATGGACTCAAGGAGAAAAATTG
GACCAAATTATCAATATTCACTTTGAAAGATGTGTCCAAATAGGGTCAAA
ATACCGCAATCCCCAAATCATTAACTATATTTCAAGAAAAGCTAATATTA
GGTTGTTTACAGAAAAGGCTTTGCTTAGCAGGAAAACTGGTAATGGGATA
GGCGCAATACCTAATCGTTTAGAAAGGGCTTTTTCTGAGTTTTTATAAAG
ATTTTATTTTTACAAAAGTGTTCCCGTTTCATATCAGCCACGTATTTCAT
ATTGGTACAGTGCCTGCCTATATTGCTTATTATGCTGATTGAAGCAAATT
TTTCTTTTCCTCTTTCTGAGCAATCTTGCTCCACATCCATGTCAATCCTA
TGTGAAATGGCTTGTGAATTAAAATTGATGAGTAAGCAAATGATATCACT
CTTATTTAAAAACACCCCTAGCTATGCAATGTGTGATAATAATGATAATA
CTTTCCTGATGTCGTGTTATCGTATACGTATATTGTCCATACACACCTTA
GCTTTGCAACTTTCAAATGTTGATTCGAAAGTTTGCACGTTTGGGTTTTT
GAGAGGGAAACCCTGTAATTTTTTCATTGCGTGACATGATGCATTCTCAA
TCATAAGTTACGCTGTTTTGAGCATATTTTCGTTTGTCCTAACCCAAAAA
GGGTCATTTTCTAGATTTATGTACTGTATTTTACACTTCATAGATTAGAA
CTTACATACCAGATCTCATTTGTATTCAAAGAAATCTCTTCCTCGAGCCA
TTACGTCATTACGTCATTGAAGCAATTACGGATTGTGTAATCATCTGTAT
AAATTAAGATAGTCGCTGAGAAAAGACATTCATTTGCACATTGCATTTGG
AGGAGTTAACAAGAGGGAGAATCTTCCACAAAAATCAGGTAAGGTTTTTT
CAGTTGTGAATACAGTCAACCCTCTATAATTCGGATCGTTCTTAAATTCG
ATTTAATTCGAATTCAAGCATTGATCTTTTTCAGCTGGAAAGTAGTGTAG
AATGCTCTCTGGAATTCGAATTTTATTCTAATTCGGAGAATAGTCTTCAT
ACCTTGGAGATCGAATTAGAGAATTAGGCAACTGCATAAGTAAATCAGCG
AGATTCAAACTAATTTTCGGGTTTGGCTTGACACGTTCCAGAAGACAGAT
TTCCAAGCCTTACAGCCTCATAAAAGTACATTTGAGATTTTTGTGACGTA
AAATTGACGAGGTTTTGTCCTGGTCTTTAAATTTGATTTTTCTAAGAAAT
AAGCGAGTTGACGTATTTTTGTATTTGATCTTGTTGTTTATGTTACGTTA
TATTCAATGTTTTTCTTATTGAGGCATATTGCTCAATACTTAAGCCTGCT
TTAGAATAATATTATCATGTTACAATTGCGTGTCATGGTAATCTGATAGT
TTTTGCACCTTGTCTAATGAAAAGGGTACTGTTTTGCGTTCGGACACCGT
AGACTTTGTCTATATATGATAATTAGTCTTTCTTTATCAACAGAAATCAA
AGACAAACCCACTCGTTCAACCAAAGAAGACAAAAAACCTGGTATACTAT
CACAAAGGAATCATAAAAAGTATCAAAAAGCTCAATTTTTGAGTATTCTA
AAAACTGATTGGTACTAGTGTACCTAGGACGGAAATATTGGCAGAAAAAA
TAAATCGATTGAACCGAAGAAAAATGATCGACTCAACAACAACACCAGTA
AATATGGAATGCCTTCACAAACAATTACTCGAGGAACAACAAGAAAACAA
AGAACTGAAATCAAGGGTTGACGAACTACAAATGGCATTGGAATCAGCCG
ATATAAATTATGAAATGTTCAAACAAAGATGTATGATCCAATTTGAAAAC
TTTCAAAACGAAATGGCAAATATGAAGAAAGATTTCGAACAAATGCTGGA
AGCTTCAAGGCAAATGGTTCAACCACAACGACAAGATTTAAGGAAATTAC
ATAAATGTGCAGAGGAGAATCATAGAAACATCAACGACGTTGATCTGCGT
CTTCAACTCCTTGAAAATAGTCGAATGAATGGGAAATTGCTATGGAAAAT
AGACGACTTTAGACAGCGACGCCAACAGACCTTAGTTGGAGATATCAGTG
CTTTACATAGTGCACCATGCTATACAAGTGAATACGGATACAAATTTTGT
TTAAGGGCCTATCTAAACGGAGATGGAGTAGGAGAAGGAACACACTTATC
ACTATTCTTGGTTCTTATGAAATCAGACTATGACAACATCTTGGAATGGC
CTTTCCAAAAGAAAATCAAATTCACTTTGATCAATCAACAAAACAGGAGC
AAAGACCACATCGAAGAAATTAATCCTAAGAAAGGATCAGAAAGTTTTCA
AAAACCAAAGAAGGAAATGAACATAGCTTCAGGGTGCCCAATGTTTATTG
AACTAAATAGATTGGATATTGATGGGTTTTTAAAAGATGACTGTTTGTTC
TTTGAAGTTGATGTGGAATAAAAGACCATATTAAAAAGTATTTAATTATA
TGTGCATGAAAACTCATGACGTGTATTTTGTAAATAAATGAATAGATGTT
TTTATTTTAAGGCAGGATCCTAAGATAAAAAACTAAGGTAATGTTATAGT
TCAAATTGTTTAATATATTATGATAATTATACTGTGATTCATTATGTTTT
GTAGAAATAGCTAAAATTACTTGTTTACTTTAAAATTTTCTACCTTAAAA
ATTAAAGTAATAATTTGTTATCTTTGACCCAAATAATATCTGCACTCTAA
TCAATCACTTCAATCAATCAACAAGACAGAAGCAAAGACCACATCATAGA
AATTAATCCTAAGAAAGGATCAGAAAGTTTTCACAAACCAAAGAGGGAAA
TGAACATAGCTTCAGGGTGCCCAATGTTTATTGAACTAAATAGATTGGAT
ATTGATGGGTTTTTAAAAGATGACTGTT

Coding sequence (CDS) from alignment at sc0000084_pilon:1313407..1320534-

>MSTRG.11618.1.p1 ID=MSTRG.11618.1.p1|Name=MSTRG.11618.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=798bp|location=Sequence derived from alignment at sc0000084_pilon:1313407..1320534- (Clytia hemisphaerica_ch_hm2_pilon)
ATGATCGACTCAACAACAACACCAGTAAATATGGAATGCCTTCACAAACA
ATTACTCGAGGAACAACAAGAAAACAAAGAACTGAAATCAAGGGTTGACG
AACTACAAATGGCATTGGAATCAGCCGATATAAATTATGAAATGTTCAAA
CAAAGATGTATGATCCAATTTGAAAACTTTCAAAACGAAATGGCAAATAT
GAAGAAAGATTTCGAACAAATGCTGGAAGCTTCAAGGCAAATGGTTCAAC
CACAACGACAAGATTTAAGGAAATTACATAAATGTGCAGAGGAGAATCAT
AGAAACATCAACGACGTTGATCTGCGTCTTCAACTCCTTGAAAATAGTCG
AATGAATGGGAAATTGCTATGGAAAATAGACGACTTTAGACAGCGACGCC
AACAGACCTTAGTTGGAGATATCAGTGCTTTACATAGTGCACCATGCTAT
ACAAGTGAATACGGATACAAATTTTGTTTAAGGGCCTATCTAAACGGAGA
TGGAGTAGGAGAAGGAACACACTTATCACTATTCTTGGTTCTTATGAAAT
CAGACTATGACAACATCTTGGAATGGCCTTTCCAAAAGAAAATCAAATTC
ACTTTGATCAATCAACAAAACAGGAGCAAAGACCACATCGAAGAAATTAA
TCCTAAGAAAGGATCAGAAAGTTTTCAAAAACCAAAGAAGGAAATGAACA
TAGCTTCAGGGTGCCCAATGTTTATTGAACTAAATAGATTGGATATTGAT
GGGTTTTTAAAAGATGACTGTTTGTTCTTTGAAGTTGATGTGGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11618MSTRG.11618Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11618.1.p1.exon1MSTRG.11618.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11618.1.p1MSTRG.11618.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:1313407..1320534 -