MSTRG.11616.1.p1 (mRNA) -

Overview
NameMSTRG.11616.1.p1
Unique NameMSTRG.11616.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:1299551..1300885-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11616.1.p1 ID=MSTRG.11616.1.p1|Name=MSTRG.11616.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1335bp|location=Sequence derived from alignment at sc0000084_pilon:1299551..1300885- (Clytia hemisphaerica_ch_hm2_pilon)
AAATTTTATAAAACAGGAAGAGAGTGGTGTATCAAAGTTCTGTTCATTCT
AACATTTTAAGAGGAAGAGATAAGACGTAAAAACAAAACGTTAGTAAAAA
CGATATGGAAAAGAAGAAATTTTGCGTTGAAAATACTGAAGAAGTTTCGA
ATGAGTTTGAATCATTGCAGAAACTATTTCAAGAAAATGAGAATCTTAAA
CAAACTGTTGCCAACTTGGTAAAGAGGTTGTTTATTATAGAAAATCAACA
GAACCATGGAGTTGAAACTTCAGAACAAATCGCCATGAATGAAAGAATGA
AAAGTGTTGAAGAGACCACCAGAATTAATATTGAGAGCATTGGTGATTTA
GATTTGAAATTTCAACTCCATGAAAACTCTGTCAATGACAGTCATTTGAT
TTGGAAGATCAACAATTTTCAGCAACGAACAACTGATGCAGTTATTGGCA
AGACGAGAGCATTGCATTCCGCTCCTTGCTTTACGAGCAAGTATGGATAC
AAGTTTTGTCTAAGGCTGTATCTACACGGTGATGGTATGGGTAAAGGAAC
TCATTTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACAACATTT
TAGAATGGCCTTTCCAAAAGAAAATCAAATTCACTTTGATCAATCAAGAA
GACCGAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGATTCATC
AAGCTTTCAGAAACCAAAGAAAGATATGAACATTGCTTCAGGTTGTCCAA
TGTTTATGAATTTGAACAGACTCAAACCTGAAGGATTTTTAAGGGATGAC
TCTTTATTTGTCGAGGTCAAAATAGATTAATATTATGATAAACACAGCGG
GGTGTGAAAAGATATTTTACAAATAAAAAATAGTTATTCATGTATATTTT
CGTAAATATAACAGAAAATAAAACTTACTAAATTTGAATGAAAAATTTGT
ATGCAATAAATATTATATAATGGAAATACGAAAAATTACGTAAAAATTAT
ATTAAGCATTTTTTAAGATCAATTTTATACACTTTAAAACACAAAAAAGA
AATCTAGGATTTTAGTATTTTTCAAGTAGATTTATCTAAAGATATATTAT
ATTTATAAACTTTTTGTAATATTTTAACATGGTTGTTATATATATTGTTG
ATCAGTTATAACAAAATTTAAAAGAGAGAAAAAACAGCAATAATTTAATT
CCTTAAAAATATTAGGAGTTGTACATATACAGTATCATATTCAATATATA
TATACATTTTCAAAAAAAATAAAACGAAAAACGTAACACAATCAACTACC
AAATTTACTTGTCGTTCTTCACTTTCATCAGTGAA

Coding sequence (CDS) from alignment at sc0000084_pilon:1299551..1300885-

>MSTRG.11616.1.p1 ID=MSTRG.11616.1.p1|Name=MSTRG.11616.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000084_pilon:1299551..1300885- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAAAGAAGAAATTTTGCGTTGAAAATACTGAAGAAGTTTCGAATGA
GTTTGAATCATTGCAGAAACTATTTCAAGAAAATGAGAATCTTAAACAAA
CTGTTGCCAACTTGGTAAAGAGGTTGTTTATTATAGAAAATCAACAGAAC
CATGGAGTTGAAACTTCAGAACAAATCGCCATGAATGAAAGAATGAAAAG
TGTTGAAGAGACCACCAGAATTAATATTGAGAGCATTGGTGATTTAGATT
TGAAATTTCAACTCCATGAAAACTCTGTCAATGACAGTCATTTGATTTGG
AAGATCAACAATTTTCAGCAACGAACAACTGATGCAGTTATTGGCAAGAC
GAGAGCATTGCATTCCGCTCCTTGCTTTACGAGCAAGTATGGATACAAGT
TTTGTCTAAGGCTGTATCTACACGGTGATGGTATGGGTAAAGGAACTCAT
TTGTCACTTTTCTTGGTTCTTATGAAATCAGAATATGACAACATTTTAGA
ATGGCCTTTCCAAAAGAAAATCAAATTCACTTTGATCAATCAAGAAGACC
GAAGTAAAGATCATGTGGAGAAAATGTTTCCAAACAAAGATTCATCAAGC
TTTCAGAAACCAAAGAAAGATATGAACATTGCTTCAGGTTGTCCAATGTT
TATGAATTTGAACAGACTCAAACCTGAAGGATTTTTAAGGGATGACTCTT
TATTTGTCGAGGTCAAAATAGATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11616MSTRG.11616Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11616.1.p1.exon1MSTRG.11616.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11616.1.p1MSTRG.11616.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:1299551..1300885 -