MSTRG.11613.1.p1 (mRNA) -

Overview
NameMSTRG.11613.1.p1
Unique NameMSTRG.11613.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:1247112..1249597-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11613.1.p1 ID=MSTRG.11613.1.p1|Name=MSTRG.11613.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2486bp|location=Sequence derived from alignment at sc0000084_pilon:1247112..1249597- (Clytia hemisphaerica_ch_hm2_pilon)
TGCCATTTCGTTTGACAATTTTATATGACAAATATATATAAGGCGTTCTT
TGTGTGTGCTTGTGACACAACTTACGTCTTGGAAGTAAGATATTGAGGCA
AAGACAGGCGAAGAATGAACGATGTTCGAAATATATACAAGATAGAAATG
AAGCAGCTAAATAAATATCAACATTGAAAAAGCTATGGAAATATAAAACT
AAAGTTTAAACTAAACTTTTCATGCATAGAAAACAGCCATGATGGAAAAT
GTAGAAAAAAGAGGAGCGGAGAACAGTTGTAAACAATCATTTTGAAGACT
GGAATCTTTCAACGGTGGCTAAATTGGACGTATACCGCCGAAATAAGGAA
TTTGGTTTCAAGAGCTCAACAAAACCAAGAGACAGTCATACTTTGATGCA
AAAGTCAAAGTATGCGAAATGAATTCAGAGCGTGAATTCACTGGAATTCA
AAGCAGGGCGTGAATTCAGGGCGTGAATTCAAAACACGATCCGTTAACGA
TGAGGAGCAGAAAACATGGGGTAGCAATACAGCAAAATAGCGGTAATATT
TCAAACATCTTTTTTCTAAGAGGAAGTTTCCTTAAAAGATTTCCTTTTCG
AGAAGAAGTATTTTTAGTCCCTTAGAATCGGGCTACCAAAATTTGAACTT
TAGAGTTCCATTCAACTTAGCAACTTCTGATCGACTTTCTGATTGACTTG
TTAAGGTTTTTTTATCATACTATCTATTTTTTCAGCTAAAGGAATCGGTT
ACGAATACAATCTTTGAGTTAATCTGTTAATGCGGTTTTACCTATGACGC
ATCATCGTGGTCTCGATTTGTCAACTGAATAACTGAGACCAATTAACTTT
GCCGAACCAATATTTTTACCAAATTTACAGAATGTGCGGGAAAAACCAAA
AGAATTCACGCGTGCATGCGCACTAAATTCAGCGCAGGAAAGTTTCTCAT
CAAAACTACAACAACAAACCAAACTTGTGAAAAAAAATATATGCATAGTG
AGGGCTTAGTAGGGAAAAATTATAATTGTATACAAAACTAATGTTATTTT
GTTCTTCTTTTCAGACTAGAGTTCCTGACAAAAGATGCTACCTGAAAAAG
AAAAATGTTCTCCCTTGAACAGCTTATCTGAAGAAAACTCCGCCCCAAAC
TTTCAACACGTGATGGAGGAAAACAAAATGCTTCGAAACACAGTCAAGGT
TTTGGAGGATCGATTAAGGGATGCTGAGAAAAGATCACGAGAGCAACAAA
AAAATTTGGAACGAGTGATGGCTCAAAAAGAGCAGCTCCAACTCCATAGC
AGTTTGACAGAAAATGGCCAAGCTATCTGGAAAATTAAAGATTTCAAAGC
TAGTTTTATGGGCCTTGAGAATGGGTATGAGCTGACTAGCCTACCATATT
TCACAGGAAGCTTTGGTCACAAATTTTGTTTGAAATTACACCCTTTTAAA
CATCTTGAACATGGAAAATGTCTTGGTTTGTTTTTCGTTGTTTTGGAGTC
GGAATATGGAAATGCATTAGAGAAAAATTGGCCAGTTGGCACTGTGAAGA
TTTCATGTAGATTTCTGAGCCAGCAAGGTTCATCAAGACATGGTAAGTGG
AAAGAGGTGGACTTGACTTGTGGGTACAATAAGTCCTACCCATCAGAGCT
AAGTATTGTTTTAGATAATTTGGATGGACTTGTGGACGATGGTAGTCTTT
ACATTGAAGTGAAATTGGAAAACATTAAAAAATAACATTGACAAAATTTA
TTTTAAAATAATGTTGTTGTATTTTTGGATTGAATGGCTCGTTGGATTTT
TCTTGTAAACTTGTAAACGTAAAGGTAGATATGAATTTCATTCAACGTAA
TTTGTTGAATTTGTTAGTATTATGATACCACCCCATTATTCCCAATAAAA
CCCAATTTCTAAACTACGAAATCCCTAGGGTTCTTACCAGTCTTATATTC
TAATATAGTTTTAGGCCTGAATAAATCATGAAAATTTTAAAGCTTGGTAA
ATAGTAACAAACCGCCCCCCCCCCAAATGTGAAACCAGCAGTTGTTTTTT
TAATTCTGAATCTTAAGACACTAAAGAAAGTCCACCATTTTTAAAGCACA
TTCTTGGGGTCATTTTTAAGGTCAATGGGTGAAGAGAGTATACTGTTTTT
TGTTTTTTTCTCATTAGACAAGCCAATTTTTAGTTTTTATAATTTTCCTC
ATGAAATAAATCATAATTCTATTGGGATATACTTTTATGCCTCTTCGAAG
ATTCTTTATAGAATATGGTGTATATAATTATAATAATTATTAAGTTAGAA
ATGTCACCAGAGAATTTTTGCACTTGCTCATTATGCAAATTTTGGTAAAT
AGCTATGTTTATAAAAGTTGGATTTTATTAGTAAACCCGTAACGGCTGTA
AACTATCCAGGACATTAGGTCCTATCGTTAATATTACCAACTGAAAATAA
ATTGATTATAATACTAATAATAATTACTCTCCATTT

Coding sequence (CDS) from alignment at sc0000084_pilon:1247112..1249597-

>MSTRG.11613.1.p1 ID=MSTRG.11613.1.p1|Name=MSTRG.11613.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000084_pilon:1247112..1249597- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTACCTGAAAAAGAAAAATGTTCTCCCTTGAACAGCTTATCTGAAGA
AAACTCCGCCCCAAACTTTCAACACGTGATGGAGGAAAACAAAATGCTTC
GAAACACAGTCAAGGTTTTGGAGGATCGATTAAGGGATGCTGAGAAAAGA
TCACGAGAGCAACAAAAAAATTTGGAACGAGTGATGGCTCAAAAAGAGCA
GCTCCAACTCCATAGCAGTTTGACAGAAAATGGCCAAGCTATCTGGAAAA
TTAAAGATTTCAAAGCTAGTTTTATGGGCCTTGAGAATGGGTATGAGCTG
ACTAGCCTACCATATTTCACAGGAAGCTTTGGTCACAAATTTTGTTTGAA
ATTACACCCTTTTAAACATCTTGAACATGGAAAATGTCTTGGTTTGTTTT
TCGTTGTTTTGGAGTCGGAATATGGAAATGCATTAGAGAAAAATTGGCCA
GTTGGCACTGTGAAGATTTCATGTAGATTTCTGAGCCAGCAAGGTTCATC
AAGACATGGTAAGTGGAAAGAGGTGGACTTGACTTGTGGGTACAATAAGT
CCTACCCATCAGAGCTAAGTATTGTTTTAGATAATTTGGATGGACTTGTG
GACGATGGTAGTCTTTACATTGAAGTGAAATTGGAAAACATTAAAAAATA
A
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11613MSTRG.11613Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11613.1.p1MSTRG.11613.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11613.1.p1.exon2MSTRG.11613.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11613.1.p1.exon1MSTRG.11613.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:1247112..1249597 -