|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000084_pilon:1124355..1127814+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11599.1.p1 ID=MSTRG.11599.1.p1|Name=MSTRG.11599.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3460bp|location=Sequence derived from alignment at sc0000084_pilon:1124355..1127814+ (Clytia hemisphaerica_ch_hm2_pilon)
TAATCTTTGATGCCAACACGTGTAGATGTCAACGAATTAAGAATCAGTTT
ATCTTATCAATTTCGAATCATCAATTCGCCTATAAAAGGAGGTGGACTCA
ATTTAGAAATTAAAACTcaattcaaaatgaagatacAACTTAGCTTATTA
GCAATTGTTTGCTTAGTGTTTCCAACACTATCACATTGTAAGTATGCTTT
CATATTTCGCTTTCTTGACCCAACCTTTGTAGCATTTTATTTTTCGTATC
CATGTGTATTAAACTGTTGAAATTAAATCTACGACATAGTTCAACTACTG
TTTCCAGATCACCCAAATAAAGACATATACGCATGCGTAAATTCTTGTTC
TTTTAACCAGCGTCATTTAGCGTAATATAGCAAAAAGGAGTGAATAAGTA
GGGGTAGTGGCCCTCATAAGGTCGGGGTTGGGTGATAAAATGTGCCGTGC
TCTTTCgttctttttatcatttgttGTTCTTGTTAGAGGGTCTGGAAAGG
CTGTTGAACAGTCTCCGTCCTCCCTACCagggaaagtttttttttcgagt
taccccactaaaaaattttttttttgatcagTTTTTGTTTCAGTAGTAAG
GtactttttaagatcattaatatattttgaaaatgcagATTCAATCATag
ttgtcaatataaaaaactgGTAGTCAATTGTTATAACTTTTTCCTAGTGA
AAGCAATGCTtcaaaatcgatttgctcagtttttgatcacccTACCCAAT
AATTTTGTTTGGAtttgttcaaaaattaataacatgaccaaaatttgagg
aaaataaACCATTTTATGATTGGTAAGTTTAAGGTGTTAACAAAAGGAAG
AAACAAGAGGCTTCCatacaaattttgatttttttaagcaAGTCTGCCat
cataaaacataaaatgaaatcCCCTAATTACCCAGATTTCAGGATTTCAG
TATTCTGACCGAAATACAGAATAGATTCTGAAATCTCGTAGACCTCCACT
TTTATGTGGACTATGATTGAATCTAGTCGAAGAGTTATTATTTGCTTCCC
TACACGAAATATTCATTCTAAATTTCTAATTACTTAACAGCGTATCAAAT
CAATGATGTCCAAGATGATTCTCTCTACGATCTAGTATCATTGCAACCGA
AATCATCCGAATCACAAAGTGATGACAAAAACCGACATGTCGCCGACATG
ATTGGTGATGATGACGTTAATAACAAAGAGAATGACAACAGTTATGTTTT
TGATCCTAATGGTGATGCGATTGGTGAAAATAATGAGATCAACCAAGATG
TAGAGGATACAAAGTCGGTTGAAGATGGTGATGGTGACTTTGAGGATGAA
CAATTGAATGATAACatggatgaaaatgaagatagtGAAGACGACGACGA
TGATGAGATTCTCAATGGTAAATAAATCTTTCATAtcattttcaaaggtt
ttgtttttaaataagagtgatatcgtttgcttactcatcaatttcggatt
gacacgaatgtggagcgaGATTGGTCAgaaggagaaaaagaaaaacattt
tttgcttatatcagcataatataacaatagacactgtcctgatatgaaac
agaacacttatgtaaaaataaaacctttaagttaaCCTTTAATTTGATTG
ATCGACCGCCGggggcggtttctttcatagtggtacgctaatatcgtttt
gccttggctcattactttgtctgacatttactttcggtttttttaactag
attacccaggtgtttctctttttttttccttgaatgtcttttattcggaa
ttgaataatcgagacatgaaaaatgactatattgtaatctgttttcaatg
aataatctaaaatgtactggagatgacatgtaggcgttaataatgtgcac
gcgctctttcgcgagcgtgatgcgtgatggaaggcggtcgtttcagtgtg
gtttagattcacactgtgacctagttttaATATACATATATATTGAGTTT
TCtgacataaaaacaaaagaaatgaaatccccagccataaaaaacgtTGG
AAAACCAATCCCCACCGAGAGAttcagtccattatttttatccccactgg
ctgaacaAATCCTGCCGGGTCTGTGGGAAGAGGTTGTGAAACGGGAATAC
TTATGTAACAAATGACGGTATACACTCTTAATCTATAGATTTCAACGCTA
ACGAAGAAAATGACAATAGCAATGATGGAggagaagaagatgaagatgaa
aacgagGAAGCAGACACACGAGAACTTGCTGAGAATGCAGCTGATGAAGA
ACTTATCCAAGGTTTGACTTTCGattcgtgatatgcaccactgcaatgac
ttcacgaaactatgcaacttttctgtttttgttccacccaatacgtcact
ttttctattgtttaaatgacgtattgggtggaaaatcttaaaagttctca
gaagaatctccagtggtgcatatcatgattATTCATATATACCCtagggg
ggaggggtacttaggcaaaatgtgTGCCGAGTATGTGCAAGCCATAAGGC
TCCCTTTtacacaccctcgaaagtctctcaaaggagtCTATAAAAACcat
aaaagaaaattgagtctctgttaaGGCCCACCCAATatcacgaaatttaa
aattttttctctcaaaggaCCGtaactttcaaatgaaaatcttttctcCT
ATAGATCCAGAAGTGCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCG
ACGTGCTATACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTG
TCGGGAGACGTCGCTTTATACGTCGTGTAGGCAGGACAAGACTCATACGT
CGAGTAACACGACGACGATTTTTACGCCGTATCACACGACGTGTAATCCG
TCATGTAACACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCT
ACAAAATGTGCTTGGCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGT
TTAATCAAGAAAGGATGTCGATGTGGCGTATTTGGATtgattggaaaata
aaaaacttataaCAGACCATGTTCGCATGtaggttccgtttcgctccgaa
acgaaatgaagtcATTCCATTCTAATTCATTCTAACTTTTGAAAACACAC
TCCTAGGGATCTATAATTTTAGCTAAACTTCTCAGATTCTCGAATTAACC
TATTAAGTGCAAACACTCAGGAACATCGAACAGCACGGCATGAGCCGTGA
CGATCCTAAGTCTAGATCTACCGGTTTCTATTCGGCcgcaaaaacattat
ttttccaTTGAGCCAGGGAAAGGTTTTGCAGAATATTTGAAGTCTGAAAC
ttttaatttacatgttagggttaaaattttatttttcttcattaaaattt
ctttcattttgtattaatattttaatacaatttcttttggaaaaaaatac
aatttctgAC Coding sequence (CDS) from alignment at sc0000084_pilon:1124355..1127814+ >MSTRG.11599.1.p1 ID=MSTRG.11599.1.p1|Name=MSTRG.11599.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3900bp|location=Sequence derived from alignment at sc0000084_pilon:1124355..1127814+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCAACACGTGTAGATGTCAACGAATTAAGAATCAGTTTATCTTATCA
ATTTCGAATCATCAATTCGCCTATAAAAGGAGGTGGACTCAATTTAGAAA
TTAAAACTcaattcaaaatgaagatacAACTTAGCTTATTAGCAATTGTT
TGCTTAGTGTTTCCAACACTATCACATTCGTATCAAATCAATGATGTCCA
AGATGATTCTCTCTACGATCTAGTATCATTGCAACCGAAATCATCCGAAT
CACAAAGTGATGACAAAAACCGACATGTCGCCGACATGATTGGTGATGAT
GACGTTAATAACAAAGAGAATGACAACAGTTATGTTTTTGATCCTAATGG
TGATGCGATTGGTGAAAATAATGAGATCAACCAAGATGTAGAGGATACAA
AGTCGGTTGAAGATGGTGATGGTGACTTTGAGGATGAACAATTGAATGAT
AACatggatgaaaatgaagatagtGAAGACGACGACGATGATGAGATTCT
CAATGATTTCAACGCTAACGAAGAAAATGACAATAGCAATGATGGAggag
aagaagatgaagatgaaaacgagGAAGCAGACACACGAGAACTTGCTGAG
AATGCAGCTGATGAAGAACTTATCCAAGATCCAGAAGTGCGTTCAATGAT
GAAAGAGGATCCCTTGTTTTTTCGACGTGCTATACGACGTATCGGCCGTC
GTGTTGTTCGTGTCGTTCGTCGTGTCGGGAGACGTCGCTTTATACGTCGT
GTAGGCAGGACAAGACTCATACGTCGAGTAACACGACGACGATTTTTACG
CCGTATCACACGACGTGTAATCCGTCATGTAACACGCCGCCGTTTCTTGG
TTTGTCGGGGAAAATGCTTTGCCTACAAAATGTGCTTGGCGAAAACGAAA
GGGATTGGTTATTTGATGTGCCGTTTAATCAAGAAAGGATGTCGATGTGG
CGTATTTGGATtgattggaaaataaATGCCAACACGTGTAGATGTCAACG
AATTAAGAATCAGTTTATCTTATCAATTTCGAATCATCAATTCGCCTATA
AAAGGAGGTGGACTCAATTTAGAAATTAAAACTcaattcaaaatgaagat
acAACTTAGCTTATTAGCAATTGTTTGCTTAGTGTTTCCAACACTATCAC
ATTCGTATCAAATCAATGATGTCCAAGATGATTCTCTCTACGATCTAGTA
TCATTGCAACCGAAATCATCCGAATCACAAAGTGATGACAAAAACCGACA
TGTCGCCGACATGATTGGTGATGATGACGTTAATAACAAAGAGAATGACA
ACAGTTATGTTTTTGATCCTAATGGTGATGCGATTGGTGAAAATAATGAG
ATCAACCAAGATGTAGAGGATACAAAGTCGGTTGAAGATGGTGATGGTGA
CTTTGAGGATGAACAATTGAATGATAACatggatgaaaatgaagatagtG
AAGACGACGACGATGATGAGATTCTCAATGATTTCAACGCTAACGAAGAA
AATGACAATAGCAATGATGGAggagaagaagatgaagatgaaaacgagGA
AGCAGACACACGAGAACTTGCTGAGAATGCAGCTGATGAAGAACTTATCC
AAGATCCAGAAGTGCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCGA
CGTGCTATACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGT
CGGGAGACGTCGCTTTATACGTCGTGTAGGCAGGACAAGACTCATACGTC
GAGTAACACGACGACGATTTTTACGCCGTATCACACGACGTGTAATCCGT
CATGTAACACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCTA
CAAAATGTGCTTGGCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGTT
TAATCAAGAAAGGATGTCGATGTGGCGTATTTGGATtgattggaaaataa
ATGCCAACACGTGTAGATGTCAACGAATTAAGAATCAGTTTATCTTATCA
ATTTCGAATCATCAATTCGCCTATAAAAGGAGGTGGACTCAATTTAGAAA
TTAAAACTcaattcaaaatgaagatacAACTTAGCTTATTAGCAATTGTT
TGCTTAGTGTTTCCAACACTATCACATTCGTATCAAATCAATGATGTCCA
AGATGATTCTCTCTACGATCTAGTATCATTGCAACCGAAATCATCCGAAT
CACAAAGTGATGACAAAAACCGACATGTCGCCGACATGATTGGTGATGAT
GACGTTAATAACAAAGAGAATGACAACAGTTATGTTTTTGATCCTAATGG
TGATGCGATTGGTGAAAATAATGAGATCAACCAAGATGTAGAGGATACAA
AGTCGGTTGAAGATGGTGATGGTGACTTTGAGGATGAACAATTGAATGAT
AACatggatgaaaatgaagatagtGAAGACGACGACGATGATGAGATTCT
CAATGATTTCAACGCTAACGAAGAAAATGACAATAGCAATGATGGAggag
aagaagatgaagatgaaaacgagGAAGCAGACACACGAGAACTTGCTGAG
AATGCAGCTGATGAAGAACTTATCCAAGATCCAGAAGTGCGTTCAATGAT
GAAAGAGGATCCCTTGTTTTTTCGACGTGCTATACGACGTATCGGCCGTC
GTGTTGTTCGTGTCGTTCGTCGTGTCGGGAGACGTCGCTTTATACGTCGT
GTAGGCAGGACAAGACTCATACGTCGAGTAACACGACGACGATTTTTACG
CCGTATCACACGACGTGTAATCCGTCATGTAACACGCCGCCGTTTCTTGG
TTTGTCGGGGAAAATGCTTTGCCTACAAAATGTGCTTGGCGAAAACGAAA
GGGATTGGTTATTTGATGTGCCGTTTAATCAAGAAAGGATGTCGATGTGG
CGTATTTGGATtgattggaaaataaATGCCAACACGTGTAGATGTCAACG
AATTAAGAATCAGTTTATCTTATCAATTTCGAATCATCAATTCGCCTATA
AAAGGAGGTGGACTCAATTTAGAAATTAAAACTcaattcaaaatgaagat
acAACTTAGCTTATTAGCAATTGTTTGCTTAGTGTTTCCAACACTATCAC
ATTCGTATCAAATCAATGATGTCCAAGATGATTCTCTCTACGATCTAGTA
TCATTGCAACCGAAATCATCCGAATCACAAAGTGATGACAAAAACCGACA
TGTCGCCGACATGATTGGTGATGATGACGTTAATAACAAAGAGAATGACA
ACAGTTATGTTTTTGATCCTAATGGTGATGCGATTGGTGAAAATAATGAG
ATCAACCAAGATGTAGAGGATACAAAGTCGGTTGAAGATGGTGATGGTGA
CTTTGAGGATGAACAATTGAATGATAACatggatgaaaatgaagatagtG
AAGACGACGACGATGATGAGATTCTCAATGATTTCAACGCTAACGAAGAA
AATGACAATAGCAATGATGGAggagaagaagatgaagatgaaaacgagGA
AGCAGACACACGAGAACTTGCTGAGAATGCAGCTGATGAAGAACTTATCC
AAGATCCAGAAGTGCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCGA
CGTGCTATACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGT
CGGGAGACGTCGCTTTATACGTCGTGTAGGCAGGACAAGACTCATACGTC
GAGTAACACGACGACGATTTTTACGCCGTATCACACGACGTGTAATCCGT
CATGTAACACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCTA
CAAAATGTGCTTGGCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGTT
TAATCAAGAAAGGATGTCGATGTGGCGTATTTGGATtgattggaaaataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084_pilon | genome | sc0000084_pilon:1124355..1127814 + |
|
