MSTRG.11595.1.p1 (mRNA) -

Overview
NameMSTRG.11595.1.p1
Unique NameMSTRG.11595.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:1092264..1096458-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11595.1.p1 ID=MSTRG.11595.1.p1|Name=MSTRG.11595.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4195bp|location=Sequence derived from alignment at sc0000084_pilon:1092264..1096458- (Clytia hemisphaerica_ch_hm2_pilon)
AAAAAATTCAGATTAAGATAAATCATTTTATCATCGCTCCGTCATTCCGA
TATCAGAGAGATTTTGGAAGGAAGGCTAAGCTCTTGAAGAAAAATGTTTA
TAAGTTGGTAAAAAAACAACGAGATTGTAGAGTTATGAAGTCTTATCTTT
TGCTAGTAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAATACTA
AGGCTGCCACAATGTGATAAATTTGGAGCTTCATTCAAAGTCTCTAAACG
CAAGATCATAGGTTTAGACACGGAAGGTTTGATAATAGAGCATACAGGCG
TTTACCAAAAGGAAAGATGCAGCTCGCTATGTATTGAGGAAGAAACATGC
GAGTCAGCATTTTATCACATTGAGCAACAGAAGTGTAAACTTTATTCGAA
AACCTTTGATGAAGAGAGTGAACTTATGGAAACAGATGGGGTGCTGTATA
TGACAAGTGATGATTCGTTTGGCGATGATCTGGTAACTTCTTTTATTTCC
ATTCAAAATTTATCAAAATCGTTAAGTTACGCGCTTTCCATTTAAAGTTT
TTGTTTTTACATAAGTGTTCCCGTTTCATATCAGACATATGTTTCATATC
AGTACAGTGACTGCCTATTGTTATGTCATGCTGATATGTAATAGTTATCT
GAAAGTTGCGAGTACAATATGAGAAATATTTTACGAGTTCCGAGATTTTT
CCGTACAATAATTTCCGAGCCTAATATACGGAAAATCCGGAACGAGTGAA
ATATTTTCATATTGTACGAGCAAATGTCTGGTAACTGCTTTATCGGTTAC
CCAAAAAATATACTTTTTATGTTGAAAAAAAGTGCATGGCAGTTTTTGCC
CCCGCAGGAGCGCAGCGACGAGGAGGCACTCATAGTTTTACGCATAGATA
TTGGAAATGAATCTCGATTTTTGCGCTTTGTGTGTTTGTATGTTTGTTTG
TGTCTGACATCGGCGTTCCGGCCAATCACTTAGGTGTCCGTAATAAATAT
GGCGGTAAATTATACAGCGGTAAATGTTATACATATTTTCATATTACGTA
TATATGGTATTACATATCTTCTATTACCATTATTACGTTGATTTAGCATT
GAAAAACTGAAGCGAGTCATTGTGTGTTCATTTTTCATCCACCAACTTAG
CGAAACTTCTGTATTATTTTTCTTTCATAGCACGGACACGCATGCGTGAA
CAATAAGTGCAACATTACCGGCACTGATTTTTGTGAAGAAACATGTGAAA
AACCAAACGGGTATTATTGTCATTGCAAAAACGATCATATTGGTACTTTT
TGCGATGAAAGTAAGTTTCTATGCTTTGTATTTACAATATCGATTTAAAA
AACTTTAGGGAAAGATTGTTACCAAATAGCATAAGAGGGGTACACAATTA
GTGTAGGTGAGCATATTTTTATGACATGGTAATTATCTTTTTTTTTATTT
TACAAATGTCTAATGTGGTCAGATTTTTCTAATTTCTAAATTCCGTTAGC
GAAAAAGTTTTTTAGGTATCACTACTTTGTCACGGAAAACTCAAGTCTAG
GCTCGGCGTCTGAAACTAATTTTCTCCATGCTAAAATTTTCTCCTGATAA
GGTATAATCAATTCGATTTTGTTGCCTGGGCAAGAGAGATTTTTATTTCA
GGGAATGCATTACTTAGCCTAGTTAGCTAAGCCCGTATTCACATGGCTAA
GACACACGGCTAATGGTATAATATAGCGTTTTTGGCGCTTTAAAGATTTT
TTTATTTACGGATAGTCACAACTTACCGTCAGATCTATCCTGGTGACTGA
ATCAAACTAGATTTCTAGGCTATGTATTACTATAAATATCTCTTACTTAA
AGGGACGTAAGAATAGTAAAATGTAAACATCGCGCGAACCACGTGTCATT
AAAGAGAACAATTAAAATCACGTGTCCTAAACAAACTTGTAGAACAATTG
AACAATCAAAATTAGCCATATTTGAGTTTGATTTTTTATTTTAACATATG
ACACTTGTTTTGATTTTGTATCCGCTGCATACAGTTTGTTTACAAATTTC
GCAAGTACTGTTATGTCCCTTTAAACTGACTCGAAAGCTCCTCTATGATG
AAATTATATCTCATCTTTTCTCTTTAGGATTGAAATGTGCTTTTCAGTCA
TGGGAACTGGATACTGAAAAATGGAATCAATTTAATAGTGTGACAGGTAT
GAAGGATGAGCTGTTCTTTGTTTTTTGAAATTTTAAGTCTTAAAAGTTCT
TACGATGTTCTTAAAAGAGGATTTAAAATCTATTTGAATAAGTTAACATC
AGAGCTCTCTAAGTAATTTCGAAATCTGTGGCTCAGATTGTTCTTGATTT
ATGCTTAAGGCTTTGCCAATTTTCAATTTTTAATAACTTGTTGTTATAAA
ATTGTTCTTATAAAAAAGCGTTTATTTCATTTACCTCGTGTTATATTTTT
ATTTCCAGCCACAAGCCTTACTAAAGACGAATGCCAAGAAAGATGCTTCG
AAGAATATAAGAATGGACTGGTCACGCATATTTTCTACAAGAACGAAACT
CATGCTATTACAACGTTCCCGACGCGATGTCTTTGCTATAATGGGGTTGT
TTCTGGAGGGAGTACCCGAGAGGGTCATTTTGGTTGTGAAATGACTCTTC
TTTGAAAAAAAACTAGTACAGACCCGATACAATATTTTCAGCCAGTCGTG
GTAAAAATAACGAACTTAAACGAATTTCATTAGTTTCAAGTTTGGAAATT
TAGTGGGGGTTAAAAGAAATAGCACAGTAATTTGCAGTGAGGATTTGTTT
ATTTCTTCATTTTTAACAAAAATTGGAGTACAATTTTCGACTGGGGACGA
TAATTTGGCTTATTTTTCCATTAGGACGGGGTCCCACCGGGTCTGTCAGA
AGAGGGTGTTTTAAATGAGGCGTCTATTAACGGAATATTTCTAATTATGA
AGTTTCTAATATAGAATTTTATGCACCTTCAATATGCACTATATATTTAT
TATAGCCTGGATATCCAGGCTAGAGGACAGGATAAAACAGGATTACCCTA
TTCATACTAGGCTTTTAGGAGCGGTTCAAAACTAGGGGGTTTTCCTGTAC
TGCACCCCTTAACTTTTTACCTAGTAGATCTTTTTGGATGAAATCTGGCA
CACAAAATCCTTGTCATATAAGGTAACTTTTGACAAAAAAATATTTCTAT
GACGTAACTCATCATGCCCAAAGTGAGCAAAAACCGAAAATTTCCTTTGT
TCTTTTGAATAGCTACAGTATTGTATTCTAACAAAAGCTTTAGAAAAAAG
TTTCCTTAGTCTAGAATGCTTATTTTATCCTAAATATTCAATAAATTACG
GTTCAAACGATATATTTGACATAATAAATTTGTATTGGAAATGTTTCAAT
TTTTGTGACACTTTACTGTCAGAAATGTTATCATGCTCAAGTTGTGAAAA
TTTTAGGTGTCAAATTCCTTTTTATTTTGAAGCTAAATAAAAATAAGGAA
TTTACAGAAAAATTCATCCCAAAAGCTCTATTATTTCAGGAACTATTAAC
AACAGTTTCACCCCGAACAGAACCCCCCCCCCCTAGGACGAATAGGGTTA
AAATGTAGATAGATTCATCTCAAACCATAAAAGAAATTGCTTCTAGCCTT
TCGTACCGTGAGCATGGTATACTACAATTTTTTCCTTTTATAAGAACAAA
TGTTATAAGAACAATGAATACGAGGCTCAAAATTACCAAAATATAAGAAC
AATTGAAGAACAATGCTGATCCTGAAATTACTGTTACAGTTAAAGGGTCA
CAGTAAAAAAAAAATTGGATATACAGTTGACGCTCTCTAATTCGACGTTC
TACTATTCGATAGGCTCCCGTATTCGATGAAATTTAAAGTCCCCGTCAAC
AAGAAACTCGCATAAACGACGCTCCCTTATTCGATATAAGCTCCCTTATT
TGATGAAAATCCAATTCTCATTGAAGATCGAATTAGATAACGTCAACTGT
AGTTGCTAAAATACCTCAATTACATCCTATAAATAAGAACAGGATAAGAA
CAATTCTGAGGCTCCAAGTGCCAAAAAAATGGAAAAAACAATGTTGCTGT
TGAAATTCTGTTAAAACTTCAAATCGATGGGTCTAACTAATTTTTGTAGA
GCACTTTATTATCGTATGTATAATTTGTATTTTAATTTAATTAAG

Coding sequence (CDS) from alignment at sc0000084_pilon:1092264..1096458-

>MSTRG.11595.1.p1 ID=MSTRG.11595.1.p1|Name=MSTRG.11595.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3504bp|location=Sequence derived from alignment at sc0000084_pilon:1092264..1096458- (Clytia hemisphaerica_ch_hm2_pilon)
CCACAAGCCTTACTAAAGACGAATGCCAAGAAAGATGCTTCGAAGAATAT
AAGAATGGACTGGTCACGCATATTTTCTACAAGAACGAAACTCATGCTAT
TACAACGTTCCCGACGCGATGTCTTTGCTATAATGGGGTTGTTTCTGGAG
GGAGTACCCGAGAGGGTCATTTTGGTTGTGAAATGACTCTTCTTTGAGAT
TGAAATGTGCTTTTCAGTCATGGGAACTGGATACTGAAAAATGGAATCAA
TTTAATAGTGTGACAGCACGGACACGCATGCGTGAACAATAAGTGCAACA
TTACCGGCACTGATTTTTGTGAAGAAACATGTGAAAAACCAAACGGGTAT
TATTGTCATTGCAAAAACGATCATATTGGTACTTTTTGCGATGAAAAAAA
TTCAGATTAAGATAAATCATTTTATCATCGCTCCGTCATTCCGATATCAG
AGAGATTTTGGAAGGAAGGCTAAGCTCTTGAAGAAAAATGTTTATAAGTT
GGTAAAAAAACAACGAGATTGTAGAGTTATGAAGTCTTATCTTTTGCTAG
TAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAATACTAAGGCTG
CCACAATGTGATAAATTTGGAGCTTCATTCAAAGTCTCTAAACGCAAGAT
CATAGGTTTAGACACGGAAGGTTTGATAATAGAGCATACAGGCGTTTACC
AAAAGGAAAGATGCAGCTCGCTATGTATTGAGGAAGAAACATGCGAGTCA
GCATTTTATCACATTGAGCAACAGAAGTGTAAACTTTATTCGAAAACCTT
TGATGAAGAGAGTGAACTTATGGAAACAGATGGGGTGCTGTATATGACAA
GTGATGATTCGTTTGGCGATGATCTGCCACAAGCCTTACTAAAGACGAAT
GCCAAGAAAGATGCTTCGAAGAATATAAGAATGGACTGGTCACGCATATT
TTCTACAAGAACGAAACTCATGCTATTACAACGTTCCCGACGCGATGTCT
TTGCTATAATGGGGTTGTTTCTGGAGGGAGTACCCGAGAGGGTCATTTTG
GTTGTGAAATGACTCTTCTTTGAGATTGAAATGTGCTTTTCAGTCATGGG
AACTGGATACTGAAAAATGGAATCAATTTAATAGTGTGACAGCACGGACA
CGCATGCGTGAACAATAAGTGCAACATTACCGGCACTGATTTTTGTGAAG
AAACATGTGAAAAACCAAACGGGTATTATTGTCATTGCAAAAACGATCAT
ATTGGTACTTTTTGCGATGAAAAAAATTCAGATTAAGATAAATCATTTTA
TCATCGCTCCGTCATTCCGATATCAGAGAGATTTTGGAAGGAAGGCTAAG
CTCTTGAAGAAAAATGTTTATAAGTTGGTAAAAAAACAACGAGATTGTAG
AGTTATGAAGTCTTATCTTTTGCTAGTAGCCTCGATTCTTACTGCATCAA
TCTACTCTCAACAAATACTAAGGCTGCCACAATGTGATAAATTTGGAGCT
TCATTCAAAGTCTCTAAACGCAAGATCATAGGTTTAGACACGGAAGGTTT
GATAATAGAGCATACAGGCGTTTACCAAAAGGAAAGATGCAGCTCGCTAT
GTATTGAGGAAGAAACATGCGAGTCAGCATTTTATCACATTGAGCAACAG
AAGTGTAAACTTTATTCGAAAACCTTTGATGAAGAGAGTGAACTTATGGA
AACAGATGGGGTGCTGTATATGACAAGTGATGATTCGTTTGGCGATGATC
TGCCACAAGCCTTACTAAAGACGAATGCCAAGAAAGATGCTTCGAAGAAT
ATAAGAATGGACTGGTCACGCATATTTTCTACAAGAACGAAACTCATGCT
ATTACAACGTTCCCGACGCGATGTCTTTGCTATAATGGGGTTGTTTCTGG
AGGGAGTACCCGAGAGGGTCATTTTGGTTGTGAAATGACTCTTCTTTGAG
ATTGAAATGTGCTTTTCAGTCATGGGAACTGGATACTGAAAAATGGAATC
AATTTAATAGTGTGACAGCACGGACACGCATGCGTGAACAATAAGTGCAA
CATTACCGGCACTGATTTTTGTGAAGAAACATGTGAAAAACCAAACGGGT
ATTATTGTCATTGCAAAAACGATCATATTGGTACTTTTTGCGATGAAAAA
AATTCAGATTAAGATAAATCATTTTATCATCGCTCCGTCATTCCGATATC
AGAGAGATTTTGGAAGGAAGGCTAAGCTCTTGAAGAAAAATGTTTATAAG
TTGGTAAAAAAACAACGAGATTGTAGAGTTATGAAGTCTTATCTTTTGCT
AGTAGCCTCGATTCTTACTGCATCAATCTACTCTCAACAAATACTAAGGC
TGCCACAATGTGATAAATTTGGAGCTTCATTCAAAGTCTCTAAACGCAAG
ATCATAGGTTTAGACACGGAAGGTTTGATAATAGAGCATACAGGCGTTTA
CCAAAAGGAAAGATGCAGCTCGCTATGTATTGAGGAAGAAACATGCGAGT
CAGCATTTTATCACATTGAGCAACAGAAGTGTAAACTTTATTCGAAAACC
TTTGATGAAGAGAGTGAACTTATGGAAACAGATGGGGTGCTGTATATGAC
AAGTGATGATTCGTTTGGCGATGATCTGCCACAAGCCTTACTAAAGACGA
ATGCCAAGAAAGATGCTTCGAAGAATATAAGAATGGACTGGTCACGCATA
TTTTCTACAAGAACGAAACTCATGCTATTACAACGTTCCCGACGCGATGT
CTTTGCTATAATGGGGTTGTTTCTGGAGGGAGTACCCGAGAGGGTCATTT
TGGTTGTGAAATGACTCTTCTTTGAGATTGAAATGTGCTTTTCAGTCATG
GGAACTGGATACTGAAAAATGGAATCAATTTAATAGTGTGACAGCACGGA
CACGCATGCGTGAACAATAAGTGCAACATTACCGGCACTGATTTTTGTGA
AGAAACATGTGAAAAACCAAACGGGTATTATTGTCATTGCAAAAACGATC
ATATTGGTACTTTTTGCGATGAAAAAAATTCAGATTAAGATAAATCATTT
TATCATCGCTCCGTCATTCCGATATCAGAGAGATTTTGGAAGGAAGGCTA
AGCTCTTGAAGAAAAATGTTTATAAGTTGGTAAAAAAACAACGAGATTGT
AGAGTTATGAAGTCTTATCTTTTGCTAGTAGCCTCGATTCTTACTGCATC
AATCTACTCTCAACAAATACTAAGGCTGCCACAATGTGATAAATTTGGAG
CTTCATTCAAAGTCTCTAAACGCAAGATCATAGGTTTAGACACGGAAGGT
TTGATAATAGAGCATACAGGCGTTTACCAAAAGGAAAGATGCAGCTCGCT
ATGTATTGAGGAAGAAACATGCGAGTCAGCATTTTATCACATTGAGCAAC
AGAAGTGTAAACTTTATTCGAAAACCTTTGATGAAGAGAGTGAACTTATG
GAAACAGATGGGGTGCTGTATATGACAAGTGATGATTCGTTTGGCGATGA
TCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11595MSTRG.11595Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11595.1.p1MSTRG.11595.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11595.1.p1.exon4MSTRG.11595.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11595.1.p1.exon3MSTRG.11595.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11595.1.p1.exon2MSTRG.11595.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11595.1.p1.exon1MSTRG.11595.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:1092264..1096458 -