MSTRG.11549.1.p1 (mRNA) -

Overview
NameMSTRG.11549.1.p1
Unique NameMSTRG.11549.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:269692..273752-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11549.1.p1 ID=MSTRG.11549.1.p1|Name=MSTRG.11549.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4061bp|location=Sequence derived from alignment at sc0000084_pilon:269692..273752- (Clytia hemisphaerica_ch_hm2_pilon)
TTACAGTGTACAATCAAAACGAAAGTATAAAAAAACTAAGAAAAACTTAT
AAAAAGCCAAAATGGCTCTTTCGGTAGCTGCGACTATCAGAAAAACAAGA
TGTTTGTCCAATGTTCGATATTTTGGAGCACTGGGTACTAATCTTCAAAG
GGGACTGGTAACCAAAGCGCAACAAGATGAGTTTGAAGAAAATGGAGTTA
TTTGTTTGAGAAATGTTTTCAATCAGCACTGGTTGAAGACCGTCGAGAAA
GGTAAGAATCCGTTAACCGTTGTTCAACCTCATATCATTAGCGTTATTCT
ACAATAATTCAAACTTTTTTGAAATTACAGTAAAAAGTTTTCATTGATCA
GCTCTATAATAGTGAGTTTATGTATTTACGTCCTTTTGAGGACGGTAGAG
TGACTGAAACAATTTGGAAAAACCCGCACTTCTGACCTGCAAAATCGAGT
ACGGTAAAAGTGCTGATTTACCGTCGTCCTTCAGATCGACATGCCTTAGG
CGTAAACAATAGAAATATTGCAGCTGGATCTGATAGTCTCCAGAAGGGAG
GGCTGGCTCCCGCTGCAGAACCCGTTATTTCATCAGGCCGAATTCTGTAT
TATTAAAAACCTTTCGATATTGCAAACCTTGCCGACCTTTAGAGCTTCAG
GGTCTTTGAAAAAAATTCAATTGAATACAAGACAAGCAGAATCCTAATTT
ATCAGTCTCATACCTTAATTATTCTTGGCCTGAGGCAGAAACAAGCTGAC
CTAAAAATTTCAGATGAGGCTTTACTCTTATTCTGATTTTCTTTTTCCGT
TTAGGAATTCATCAAAACATTTTATCGCCATCTCTCCATTGTGATTGGCT
AACAAACGAAAAAGATGGGAAATCTTTATTTTTCAACGATTACTTCAACT
TCAATAACATTTATGAATACAACTCATATGTCAGAGAATCACCAGTGACA
GAAATTGCACAAGAAATCACCAACAGCAAGGTACATTTCAATCAGAAATT
TTCACATGTAGCATGTAGCATGAGAGTTAGACAATCGTTTTGGTCTACCA
TTTGAAAGGTTTATGTCCCTTTAAATCAATTCGTGAGGATCTGGGACTTA
AAGTATGGGACTTGGTATTTTGACTGTTTCAAGCATTGAGTTTCAAGCCC
GAAGGGCTAGAGACAAAACTTTAACCCTTCTCAGGCAAGAGAAATTGAAG
CAACTTATGTCCTATCCAAAACGCGCATAGAACACACCGTATTCATGACG
ACGGATTGTATCTAGCGTTTGTGTAAAAACTACTCGTGGGCGTTCTGGAT
GGGAAATAAATGGTTTCATTTCCCATTCAGGAGTCTCGCCTCTAGCCCTT
CGGACTTGAACTCCATTGTTTTCTACTCAAGTCAAATAGGGAGGCATGAT
TGTCTTTAGGAATTCTTATAATTTGACTTGTGTGCTCATTTTAATGACTT
TTCTTTCGATTACAGAAGATGGGTTTATTTCACGAGCACGTGTTTTACAA
AGATAAAGGATCCATGAGAGAAACACCATGGCATCACGATCAAGCATATT
ATCCCTTTGATGGGAACAAGGTAAGACTAAGAGATTGTAAACCGACAATA
TATTGATGTGTTGGTACGCTCCAAGAACCTTTTTTTCAACATTCTCAATC
GCCAAGTACACATTTTTTCCAGCCCCTGAAATTAGCCAATTTTATTTCAC
TATCTCGTAAAGTAAAAGGTTTTTAGATCACCTAAGCATGGCCGAAGATA
GCCCAATATGGAGCATAAATATGGTATAATATCAGGGGTGGTCAAAGCGA
ACTTTTCAGAAAATAAATGCTAAGCAACCCCATCCCTGACCCAGAAATTA
AAGTGGCTTATAAGAAAGATGTGTAGCAAGAAAAGTACAGGTAGTGCATT
AAAACTTCAGAGAAGATGATAGATAAGAAAACTGTTCTTTACTGATGCAA
ATGTGACGTTTTTTTTAGCTTGATTGACACTGGATGAGTTTCGCATACAC
TGAGTTACACATCAAAATTTCACAAAAGTAATTTCGAAACAGTGTCGGGT
TTTTGATCGATCACGGTTCCACCAATCATTTCATTTCATTTTACTTCATT
TCTAGAATTGTTCCATTTGGATGCCGACACGCCAAGTCAGCAAATCGTGC
AGTTTGAAATTCATCAAAGGTTCACATCACATCAACAAATGGTTTGTACC
AAGACTTTTCAAAAGTAATGAGAATTACATCGACATTGATGAATTGCCAC
AAGAGGAGCGTGAGAAAGCACATGATATTAGAGAAGTTGTGGATGGCGTG
AAGGATAAAGATATATTGCAATGGCATCTCCAGGTAATTGAAAAATTTAT
TATATTATAATTTTTTATAATTTTATAAAATATTTATTGCTAGACAATTT
CACCGACCATTATAACCCTGCGTCACAGACCCGCTGTGACCCCAGCCCCA
CTGGAAAATTTGGCAAAAAGTTCGTCTTTCCCAGTGCGAAATTGACTTTG
ATTTCAGCCCCATTCGAAATTCAATGTTTAAAAATTGCACTTCATAACCA
TCCCGACTGGATTTTTTAATCTTGGAACAATAGAATTTTTATCCCCATTG
AGATTTAAATATAAATTTTTATCCCCACTGTGGGGAAAAGTTTCACCGGG
GCTGTGAGACAGGGGTGTGTTGTAGGGACAGAAATACCGGAAAATATATA
AGCTTAAGCGCAGAATTATGGCAGTAGGCGGGGAGAAAAGATTTCAATGG
CTAAAATTCTCAGAAGAATTAGAGTGTGGTGGTGAGGTCCAGCATACACA
CTTTATATGTCAGTTATTGTTGTTTTCTGAAAACAAGACCTCGTGCTCAG
TGTACCTTAATACACCATTGAACGCACTTATTAAACAAAAAAAATCAACT
TCATCCTCCGCGCGGCCACAAAATTTGAGAAATTCTTTTGTTTGTTCTGG
TTTAATCAGTGTTATATTTAACCCACTGGCTTTCTCTTTGATTTCAGCCT
GGAGACTGTCTCGTGTTCCACATGAAGACAATCCACGGTACAGATTCATC
TTTTTCTAATCAAAAGAGGATCGTCATCTCAACTCGGTGGTTAGGCGAAG
ATATCACTTATTGCCAACGACCATGGCCTACTTCACCACCTAAAGAATTT
TTACCGAAAGATTTGAATTTTGATGATTTCATTGTAGAGAATAAACATTT
TATGGGACAAGTGAAGAAAATGTATAATGATGGTGAAGAGGATAAATTGT
ATAATAGGTTGTCAAGTTAAGTTGGACGAGTGAATGAATTAATGAATGAA
TGAGTATGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGATTTTCTGAGTG
AATGAATGGATGAATGAATGAATGAGTGGATGATTTGGCGAATGAGTGAA
AAAATATAAGCGAGTGAATTACTTAACCCTGCTGGTGCTCATATGTGGAA
GTTTCATGGAAATCGAATTATATTATCAGGATCTATTGAGGGGGGGGCAA
AATGTGTCCCCAAGGGGCACCAAAAGACCCTGACACCCACGGGGCAGAAA
GGGTTGAACAATAAAGAAATGAAGAAAGAGGGAAAGTAAACATTGAATGA
ATGAAATGGTAATGAGTAGAAGAATGAATAAATTTGATAAATTTGGAATT
ATTTAGAATAAAAGATTTTAGTCAACTGTAGCTTCATATTGAAGTCTAAA
TTTTGTATCATTTTATCATTTTATATTTTACATGTATAAAAAATAACTTT
TATCTTAAAAAAGTTTCAAAATAAAACTTTTGATTCCCAAATGGGTTAAT
CGGAAAATCGAATCATTTAATTCTAATCCCGATCTCCCGATAAATCCTTT
TACCCACTATTACACGATTCCTATTAATCACTCGAATCCCGATTTCCCGA
TAATTCACTTTCAATATCGAATTCTTTGTATCCCTGACTATACAAATCCA
AATCCTTTTCGTACAACCCCCCCCTGTATGGTTATAAAATGGAATAGCCC
ATTTTATGGCGTCGAGGTTAAAAATCTACATTAAAGGAAGAAATTTTTGT
GGGAACTTAAT

Coding sequence (CDS) from alignment at sc0000084_pilon:269692..273752-

>MSTRG.11549.1.p1 ID=MSTRG.11549.1.p1|Name=MSTRG.11549.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4860bp|location=Sequence derived from alignment at sc0000084_pilon:269692..273752- (Clytia hemisphaerica_ch_hm2_pilon)
CCTGGAGACTGTCTCGTGTTCCACATGAAGACAATCCACGGTACAGATTC
ATCTTTTTCTAATCAAAAGAGGATCGTCATCTCAACTCGGTGGTTAGGCG
AAGATATCACTTATTGCCAACGACCATGGCCTACTTCACCACCTAAAGAA
TTTTTACCGAAAGATTTGAATTTTGATGATTTCATTGTAGAGAATAAACA
TTTTATGGGACAAGTGAAGAAAATGTATAATGATGGTGAAGAGGATAAAT
TGTATAATAGGTTGTCAAGTTAAAATTGTTCCATTTGGATGCCGACACGC
CAAGTCAGCAAATCGTGCAGTTTGAAATTCATCAAAGGTTCACATCACAT
CAACAAATGGTTTGTACCAAGACTTTTCAAAAGTAATGAGAATTACATCG
ACATTGATGAATTGCCACAAGAGGAGCGTGAGAAAGCACATGATATTAGA
GAAGTTGTGGATGGCGTGAAGGATAAAGATATATTGCAATGGCATCTCCA
GAAGATGGGTTTATTTCACGAGCACGTGTTTTACAAAGATAAAGGATCCA
TGAGAGAAACACCATGGCATCACGATCAAGCATATTATCCCTTTGATGGG
AACAAGGAATTCATCAAAACATTTTATCGCCATCTCTCCATTGTGATTGG
CTAACAAACGAAAAAGATGGGAAATCTTTATTTTTCAACGATTACTTCAA
CTTCAATAACATTTATGAATACAACTCATATGTCAGAGAATCACCAGTGA
CAGAAATTGCACAAGAAATCACCAACAGCAAGATGGCTCTTTCGGTAGCT
GCGACTATCAGAAAAACAAGATGTTTGTCCAATGTTCGATATTTTGGAGC
ACTGGGTACTAATCTTCAAAGGGGACTGGTAACCAAAGCGCAACAAGATG
AGTTTGAAGAAAATGGAGTTATTTGTTTGAGAAATGTTTTCAATCAGCAC
TGGTTGAAGACCGTCGAGAAAGCCTGGAGACTGTCTCGTGTTCCACATGA
AGACAATCCACGGTACAGATTCATCTTTTTCTAATCAAAAGAGGATCGTC
ATCTCAACTCGGTGGTTAGGCGAAGATATCACTTATTGCCAACGACCATG
GCCTACTTCACCACCTAAAGAATTTTTACCGAAAGATTTGAATTTTGATG
ATTTCATTGTAGAGAATAAACATTTTATGGGACAAGTGAAGAAAATGTAT
AATGATGGTGAAGAGGATAAATTGTATAATAGGTTGTCAAGTTAAAATTG
TTCCATTTGGATGCCGACACGCCAAGTCAGCAAATCGTGCAGTTTGAAAT
TCATCAAAGGTTCACATCACATCAACAAATGGTTTGTACCAAGACTTTTC
AAAAGTAATGAGAATTACATCGACATTGATGAATTGCCACAAGAGGAGCG
TGAGAAAGCACATGATATTAGAGAAGTTGTGGATGGCGTGAAGGATAAAG
ATATATTGCAATGGCATCTCCAGAAGATGGGTTTATTTCACGAGCACGTG
TTTTACAAAGATAAAGGATCCATGAGAGAAACACCATGGCATCACGATCA
AGCATATTATCCCTTTGATGGGAACAAGGAATTCATCAAAACATTTTATC
GCCATCTCTCCATTGTGATTGGCTAACAAACGAAAAAGATGGGAAATCTT
TATTTTTCAACGATTACTTCAACTTCAATAACATTTATGAATACAACTCA
TATGTCAGAGAATCACCAGTGACAGAAATTGCACAAGAAATCACCAACAG
CAAGATGGCTCTTTCGGTAGCTGCGACTATCAGAAAAACAAGATGTTTGT
CCAATGTTCGATATTTTGGAGCACTGGGTACTAATCTTCAAAGGGGACTG
GTAACCAAAGCGCAACAAGATGAGTTTGAAGAAAATGGAGTTATTTGTTT
GAGAAATGTTTTCAATCAGCACTGGTTGAAGACCGTCGAGAAAGCCTGGA
GACTGTCTCGTGTTCCACATGAAGACAATCCACGGTACAGATTCATCTTT
TTCTAATCAAAAGAGGATCGTCATCTCAACTCGGTGGTTAGGCGAAGATA
TCACTTATTGCCAACGACCATGGCCTACTTCACCACCTAAAGAATTTTTA
CCGAAAGATTTGAATTTTGATGATTTCATTGTAGAGAATAAACATTTTAT
GGGACAAGTGAAGAAAATGTATAATGATGGTGAAGAGGATAAATTGTATA
ATAGGTTGTCAAGTTAAAATTGTTCCATTTGGATGCCGACACGCCAAGTC
AGCAAATCGTGCAGTTTGAAATTCATCAAAGGTTCACATCACATCAACAA
ATGGTTTGTACCAAGACTTTTCAAAAGTAATGAGAATTACATCGACATTG
ATGAATTGCCACAAGAGGAGCGTGAGAAAGCACATGATATTAGAGAAGTT
GTGGATGGCGTGAAGGATAAAGATATATTGCAATGGCATCTCCAGAAGAT
GGGTTTATTTCACGAGCACGTGTTTTACAAAGATAAAGGATCCATGAGAG
AAACACCATGGCATCACGATCAAGCATATTATCCCTTTGATGGGAACAAG
GAATTCATCAAAACATTTTATCGCCATCTCTCCATTGTGATTGGCTAACA
AACGAAAAAGATGGGAAATCTTTATTTTTCAACGATTACTTCAACTTCAA
TAACATTTATGAATACAACTCATATGTCAGAGAATCACCAGTGACAGAAA
TTGCACAAGAAATCACCAACAGCAAGATGGCTCTTTCGGTAGCTGCGACT
ATCAGAAAAACAAGATGTTTGTCCAATGTTCGATATTTTGGAGCACTGGG
TACTAATCTTCAAAGGGGACTGGTAACCAAAGCGCAACAAGATGAGTTTG
AAGAAAATGGAGTTATTTGTTTGAGAAATGTTTTCAATCAGCACTGGTTG
AAGACCGTCGAGAAAGCCTGGAGACTGTCTCGTGTTCCACATGAAGACAA
TCCACGGTACAGATTCATCTTTTTCTAATCAAAAGAGGATCGTCATCTCA
ACTCGGTGGTTAGGCGAAGATATCACTTATTGCCAACGACCATGGCCTAC
TTCACCACCTAAAGAATTTTTACCGAAAGATTTGAATTTTGATGATTTCA
TTGTAGAGAATAAACATTTTATGGGACAAGTGAAGAAAATGTATAATGAT
GGTGAAGAGGATAAATTGTATAATAGGTTGTCAAGTTAAAATTGTTCCAT
TTGGATGCCGACACGCCAAGTCAGCAAATCGTGCAGTTTGAAATTCATCA
AAGGTTCACATCACATCAACAAATGGTTTGTACCAAGACTTTTCAAAAGT
AATGAGAATTACATCGACATTGATGAATTGCCACAAGAGGAGCGTGAGAA
AGCACATGATATTAGAGAAGTTGTGGATGGCGTGAAGGATAAAGATATAT
TGCAATGGCATCTCCAGAAGATGGGTTTATTTCACGAGCACGTGTTTTAC
AAAGATAAAGGATCCATGAGAGAAACACCATGGCATCACGATCAAGCATA
TTATCCCTTTGATGGGAACAAGGAATTCATCAAAACATTTTATCGCCATC
TCTCCATTGTGATTGGCTAACAAACGAAAAAGATGGGAAATCTTTATTTT
TCAACGATTACTTCAACTTCAATAACATTTATGAATACAACTCATATGTC
AGAGAATCACCAGTGACAGAAATTGCACAAGAAATCACCAACAGCAAGAT
GGCTCTTTCGGTAGCTGCGACTATCAGAAAAACAAGATGTTTGTCCAATG
TTCGATATTTTGGAGCACTGGGTACTAATCTTCAAAGGGGACTGGTAACC
AAAGCGCAACAAGATGAGTTTGAAGAAAATGGAGTTATTTGTTTGAGAAA
TGTTTTCAATCAGCACTGGTTGAAGACCGTCGAGAAAGCCTGGAGACTGT
CTCGTGTTCCACATGAAGACAATCCACGGTACAGATTCATCTTTTTCTAA
TCAAAAGAGGATCGTCATCTCAACTCGGTGGTTAGGCGAAGATATCACTT
ATTGCCAACGACCATGGCCTACTTCACCACCTAAAGAATTTTTACCGAAA
GATTTGAATTTTGATGATTTCATTGTAGAGAATAAACATTTTATGGGACA
AGTGAAGAAAATGTATAATGATGGTGAAGAGGATAAATTGTATAATAGGT
TGTCAAGTTAAAATTGTTCCATTTGGATGCCGACACGCCAAGTCAGCAAA
TCGTGCAGTTTGAAATTCATCAAAGGTTCACATCACATCAACAAATGGTT
TGTACCAAGACTTTTCAAAAGTAATGAGAATTACATCGACATTGATGAAT
TGCCACAAGAGGAGCGTGAGAAAGCACATGATATTAGAGAAGTTGTGGAT
GGCGTGAAGGATAAAGATATATTGCAATGGCATCTCCAGAAGATGGGTTT
ATTTCACGAGCACGTGTTTTACAAAGATAAAGGATCCATGAGAGAAACAC
CATGGCATCACGATCAAGCATATTATCCCTTTGATGGGAACAAGGAATTC
ATCAAAACATTTTATCGCCATCTCTCCATTGTGATTGGCTAACAAACGAA
AAAGATGGGAAATCTTTATTTTTCAACGATTACTTCAACTTCAATAACAT
TTATGAATACAACTCATATGTCAGAGAATCACCAGTGACAGAAATTGCAC
AAGAAATCACCAACAGCAAGATGGCTCTTTCGGTAGCTGCGACTATCAGA
AAAACAAGATGTTTGTCCAATGTTCGATATTTTGGAGCACTGGGTACTAA
TCTTCAAAGGGGACTGGTAACCAAAGCGCAACAAGATGAGTTTGAAGAAA
ATGGAGTTATTTGTTTGAGAAATGTTTTCAATCAGCACTGGTTGAAGACC
GTCGAGAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11549MSTRG.11549Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11549.1.p1MSTRG.11549.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11549.1.p1.exon5MSTRG.11549.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11549.1.p1.exon4MSTRG.11549.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11549.1.p1.exon3MSTRG.11549.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11549.1.p1.exon2MSTRG.11549.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11549.1.p1.exon1MSTRG.11549.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:269692..273752 -