MSTRG.11548.5.p1 (mRNA) -

Overview
NameMSTRG.11548.5.p1
Unique NameMSTRG.11548.5.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:254603..258669-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11548.5.p1 ID=MSTRG.11548.5.p1|Name=MSTRG.11548.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4067bp|location=Sequence derived from alignment at sc0000084_pilon:254603..258669- (Clytia hemisphaerica_ch_hm2_pilon)
AGTTATTAAAGATCTAACATAATCGGATTATCATTTATTATATGTCTTGC
AATTTTTTGAATATTTTAACAACTTACAGGAAAGGCAGAATGGACGAGGG
TAAAGACATACAAGAATATCATAGCGAGCCATTGGAGAGCAAATTCATGA
CTCCCTTTGCCAACATACCTTACGTTTCTAATGTACATTACGCTCGGCCT
TCAGATGTTTTTATACCGAAAGGTTATTTTCAAAACATTGCAGAAATTAA
AAATTTCGAATTTTTTGAAGATGATACAGTTATATGTGGATTTCTTAAAA
CAGGTAGCGTTAGTATTGAACTTTTTTTTTTGTTTGTACATGTGTATATT
GAGCATCGATATTTCGATTTTTCTATACCCTTCTGGACGTGTGTTTCACC
TCTTGACAATATAATCTTCTACCCCATTTGTACAGTGTTATTGTTTGTGG
AGAGTCATTTTTCCTGAGCGATTTAGACCAAGAAAAACTTTGAAGTCTTA
TTTTGAGAAAATTTATTCGCTTAAGGTACTCTGAAGCTCTCGAGCTGTCA
AGCTGTAGAGGTAGGAAATTTTATACTTTCAGGTTTTGGTACTTAAGTTC
AGACTAGTTAGACAGTTTTGGATGAAAGACTTGAATCTAGAGACTCTCTA
TAGAAACGTTAATGTAATGATGTTTTATCGATGATTTTAGGTACGAATTG
GTGCGAACGGATTGTTTGGGCACTCCGTAATGATATCAAGTTGAACATTC
AACACGCACCCCCTGTATCAGTTTTTGGGTAAGTGAATGTATTACCTGTA
CCTGACGACCACGGCTTTTTCCTCGACACCGTTCAAAACAGAGTGATAAA
AAATCGCGTGTTGGGATAGAACGCGGGCATTTTTTTCCGCTTTATCCCAC
TAAAACGGTCCCAATCTTTTTCTCGCAGAAATAGACAAAAGATGATACGT
CATGCGTCAAAAAAGGATTGGGATGAGATAAAACTGACAAAAAATGATCG
CGCGACTACGGTCAAAAAGGTGTATCAGCGACGTATCGATACGCCATTGT
CTCCAGTGGGAAAAACGTCCTTCAATTTCCACCCTACTGGAAAATTTTGC
GTATTTTAACGTTTTTCAGAAATTAAATATCGGGAGAAAATTGTAGTTTC
AGTACTTCCACTTTGTTTCATTGGATTTTTTGATTTGTGAGGGGTTAAAT
GGCTTCCAGGCTTTATTTAAAACTTAGAGTTAAAACTCTACTTTCCAACC
GTACTTTAAAGCACTTAAAAATAAATTACGGTTTTCAAATTTGAGGGAAT
TCTCCTTTTGAGCTAAATATTACGGCGGGGATTGTGGGGGAGCAAGAAAA
CTAAAACAACGGTCCCCCTGTTTTGTTATCCCCATCTAAGATGAACAAAA
TATTTGAAACAGAAAATAGTAATAGAAGACAAAGGAGATGTTTTAAATAG
TTGCCACTCTCTCATTCGTGTTCAAGAAGTCAAGAATATTTGCTTCAAAT
AAGAGAAATATTTGAATTAGAGAGAACTTTCCACCAGAGGGAACCAATGG
TTTAGTTCTGATTACAGATAAATTCGAATTAAAAAGGTTTGAATTAAAAA
AATATGACAATAGGAAAATATTAGATAGAGAGTTGCCCTGGTTTGGGAAA
ATTTCGTAATCCAAACAAAACTTTTCAGATGTTTAAAAGTTACTCAAACA
TCAAGCACTGTCTCGACTGTCTTACCAAAGAATTATCATCTTTCAATATC
ACAGCATTGTTATGGGTATAGGAGATTTCGATACTGACAACAACAAAGCT
AACGATGAGATTTTTTCGTCGATGAAGCGACCACGTGTTATCAAAATGCA
TCTTTCATATGAATTATTACCAAGACAATTTCAACAAAAGCAACCTAAGG
TATTTGTACTCTTTTTCACCTGCAAACATCAATAGAATCTGATAAAGCAA
TTTCAAAATAAGGCTAAAATAGGGCGATGTTGAAAACTTTCATACGTGGT
TTGGTAATACATAGCAAACAAAATAGATAAATTACAAGGCTAGTCAAATT
ATACTCACTACCTGAGTACACGTTTATCGTTTCATAGTACTCTACGAAAA
ATCAATTAAAAAATTTTCTGTAGATAACGGGACTGTTTACATACAAGTCA
GATTACAGAAACCCAAAAATTCGACGTAAATTAACGAAAGCATTTTTCCA
TAGTGACCGTAGTACAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTG
TGGGTTCAACCCCCAGCTGGGTCATACCAAAGATTCTCAAAGTGGTACTT
GATGCCTCTTTGCTTGATGCTCAGCAATAGACGATATCTGATTTAGATAA
ATGCAATGCATTCTGGTTTCTAGGGACTCTCAAAGGAATTATAATAGATC
AATTATAATAGATTATAATTCCTTTGAGAGTCCCTAGAAACCAGAATGCA
TTGCATTTATCTAAATCCGATATCGTCTATTAAGAGAACGATCCAGGGAG
AAAGAGTGGCACCCTCCTCTACCTTCAGGGAGTTAGTTATCGAAATAGGA
GCCTTCTGGACGCCTCCGACTGCAGTCGACTTACTTACTTTTTTCTTTCT
TTATATCACAATAGATGATTTACATGCTTCGAAACCCAAGAGATGTTTGC
CAATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGATC
TTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTG
GTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATGAA
AATATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGTCA
TATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGAAG
TTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCA
GAGCAAATGATTCCCTTCCATGCAAAGCAGGTCAGTGTGAAACGATTTTT
TCAAAATCTTTGCTGAAGATGAGTAAAATTAATAAAAAAATGATGCCGTC
ATAATTAACAAATAACGTCGAAATTTTTTACATTGAATTTTGAGATTTAG
TAAAATTACCAAAAGTTTTTGAAAATTTAAAGTAATTGGCTTTATGGATT
TCAATGAATTCCACGATTTTGTGATTATTCAGGATGTTAGCTGGATTTTA
TGACCAATGTTGCAATAAAGTCATAAATGGGTTTTTTGACTCAAAATTTT
GTAGACTTATGCATTAAAAGATTTTGTTAAAGTCAGAAAGTTTTGCGTGC
TTTGAAAAATGTAAAAGAGTGCAGGGATGGTTTAAATTACATCCTGGTAA
AAATAAAGTTTAATCCATAGATTTCTAAAGCCCGAAAGGGCTAGATGTCG
CGCTTTGGCTGGAAAGTGTACCGTATCTCGGTAGAAAATTCTACCTATGT
CACGTGACATTACAATAGAATTTCAGCCCTTGACAAATCAGAAGCTTTGC
GGATTTTTGAGAATAGCAGCTATATTTCTTGCGCAATTTCCTTTTTTTCG
CCTGTGATTGGCTTAAAGCACGACATCTAGCCCTTCGGGCTTTATAAATT
ATTGGTTTAATCCAGGTGAAGGAGGAGAAATAACTCGTATACAAAAAAGA
AGGAGACCTCTGTGGTATTGTATCAACCTTTGTCAGCTTCGCCCTTGTAC
TATAGCACTTTGTAATAATTAACCTGCCACACTTTGTAATAAAAATCAAC
ACATTTTGTTTTTACAAATTGAACAATTTTCCAGGATGGACATAGTGCAA
CAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAGGGAAAAGCT
GGATCGTGGAAGGCTCTGTTTACACCAGACATGACCAAACAAATGGAAGA
ATGGGAATCGAAATGGTTGAAAGATTATGATCTTAAATTCATTTATGAAT
AAATAGTATTGTAATAATAGAATTTAATAGAATAGAATAGAATTTTGAAA
CGAGTAAAATGAAACATACGTTGTATTAGAATTTCAATTTTCCATTTCTG
TGTCCGTGTAATCCAAA

Coding sequence (CDS) from alignment at sc0000084_pilon:254603..258669-

>MSTRG.11548.5.p1 ID=MSTRG.11548.5.p1|Name=MSTRG.11548.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5145bp|location=Sequence derived from alignment at sc0000084_pilon:254603..258669- (Clytia hemisphaerica_ch_hm2_pilon)
GATGGACATAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTT
TAACAAGGGAAAAGCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGA
CCAAACAAATGGAAGAATGGGAATCGAAATGGTTGAAAGATTATGATCTT
AAATTCATTTATGAATAAATGATTTACATGCTTCGAAACCCAAGAGATGT
TTGCCAATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTG
GATCTTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTAT
TCTGGTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTA
TGAAAATATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCG
GTCATATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAA
GAAGTTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAA
AGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATA
GGAGATTTCGATACTGACAACAACAAAGCTAACGATGAGATTTTTTCGTC
GATGAAGCGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTAC
CAAGACAATTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGA
TTGTTTGGGCACTCCGTAATGATATCAAGTTGAACATTCAACACGCACCC
CCTGTATCAGTTTTTGGATGTCTTGCAATTTTTTGAATATTTTAACAACT
TACAGGAAAGGCAGAATGGACGAGGGTAAAGACATACAAGAATATCATAG
CGAGCCATTGGAGAGCAAATTCATGACTCCCTTTGCCAACATACCTTACG
TTTCTAATGTACATTACGCTCGGCCTTCAGATGTTTTTATACCGAAAGGT
TATTTTCAAAACATTGCAGAAATTAAAAATTTCGAATTTTTTGAAGATGA
TACAGTTATATGTGGATTTCTTAAAACAGGATGGACATAGTGCAACAGTC
GAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAGGGAAAAGCTGGATC
GTGGAAGGCTCTGTTTACACCAGACATGACCAAACAAATGGAAGAATGGG
AATCGAAATGGTTGAAAGATTATGATCTTAAATTCATTTATGAATAAATG
ATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAATCACTTCACAGTCA
CTTCTATACACTCCAAGATGGCTTTTCTGGATCTTTACAAGATGTTGTTA
ATCTCATGACCGATGATGCTGGATTCTATTCTGGTCCGTTTTTTAAACAT
GTTTTGGGATACTGGAAACGACGCTCTTATGAAAATATACTCATCATTTT
TTACGAAGAAATGAAAAAAGATTTATCCGGTCATATTAAGAAGATTGCTG
ATTTCTTAGACATTGAAATTTCAGATGAAGAAGTTTCAAATCTGGCCAAA
CATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATGATTCCCTT
CCATGCAAAGCAGCATTGTTATGGGTATAGGAGATTTCGATACTGACAAC
AACAAAGCTAACGATGAGATTTTTTCGTCGATGAAGCGACCACGTGTTAT
CAAAATGCATCTTTCATATGAATTATTACCAAGACAATTTCAACAAAAGC
AACCTAAGGTACGAATTGGTGCGAACGGATTGTTTGGGCACTCCGTAATG
ATATCAAGTTGAACATTCAACACGCACCCCCTGTATCAGTTTTTGGATGT
CTTGCAATTTTTTGAATATTTTAACAACTTACAGGAAAGGCAGAATGGAC
GAGGGTAAAGACATACAAGAATATCATAGCGAGCCATTGGAGAGCAAATT
CATGACTCCCTTTGCCAACATACCTTACGTTTCTAATGTACATTACGCTC
GGCCTTCAGATGTTTTTATACCGAAAGGTTATTTTCAAAACATTGCAGAA
ATTAAAAATTTCGAATTTTTTGAAGATGATACAGTTATATGTGGATTTCT
TAAAACAGGATGGACATAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAG
ACAATGTTTAACAAGGGAAAAGCTGGATCGTGGAAGGCTCTGTTTACACC
AGACATGACCAAACAAATGGAAGAATGGGAATCGAAATGGTTGAAAGATT
ATGATCTTAAATTCATTTATGAATAAATGATTTACATGCTTCGAAACCCA
AGAGATGTTTGCCAATCACTTCACAGTCACTTCTATACACTCCAAGATGG
CTTTTCTGGATCTTTACAAGATGTTGTTAATCTCATGACCGATGATGCTG
GATTCTATTCTGGTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGA
CGCTCTTATGAAAATATACTCATCATTTTTTACGAAGAAATGAAAAAAGA
TTTATCCGGTCATATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTT
CAGATGAAGAAGTTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATG
AAACGAAAAGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTA
TGGGTATAGGAGATTTCGATACTGACAACAACAAAGCTAACGATGAGATT
TTTTCGTCGATGAAGCGACCACGTGTTATCAAAATGCATCTTTCATATGA
ATTATTACCAAGACAATTTCAACAAAAGCAACCTAAGGTACGAATTGGTG
CGAACGGATTGTTTGGGCACTCCGTAATGATATCAAGTTGAACATTCAAC
ACGCACCCCCTGTATCAGTTTTTGGATGTCTTGCAATTTTTTGAATATTT
TAACAACTTACAGGAAAGGCAGAATGGACGAGGGTAAAGACATACAAGAA
TATCATAGCGAGCCATTGGAGAGCAAATTCATGACTCCCTTTGCCAACAT
ACCTTACGTTTCTAATGTACATTACGCTCGGCCTTCAGATGTTTTTATAC
CGAAAGGTTATTTTCAAAACATTGCAGAAATTAAAAATTTCGAATTTTTT
GAAGATGATACAGTTATATGTGGATTTCTTAAAACAGGATGGACATAGTG
CAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAGGGAAAA
GCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGACCAAACAAATGGA
AGAATGGGAATCGAAATGGTTGAAAGATTATGATCTTAAATTCATTTATG
AATAAATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAATCACTT
CACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGATCTTTACAAGA
TGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTGGTCCGTTTT
TTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATGAAAATATACTC
ATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGTCATATTAAGAA
GATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGAAGTTTCAAATC
TGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATG
ATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATAGGAGATTTCGATA
CTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCGATGAAGCGACCA
CGTGTTATCAAAATGCATCTTTCATATGAATTATTACCAAGACAATTTCA
ACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGATTGTTTGGGCACT
CCGTAATGATATCAAGTTGAACATTCAACACGCACCCCCTGTATCAGTTT
TTGGATGTCTTGCAATTTTTTGAATATTTTAACAACTTACAGGAAAGGCA
GAATGGACGAGGGTAAAGACATACAAGAATATCATAGCGAGCCATTGGAG
AGCAAATTCATGACTCCCTTTGCCAACATACCTTACGTTTCTAATGTACA
TTACGCTCGGCCTTCAGATGTTTTTATACCGAAAGGTTATTTTCAAAACA
TTGCAGAAATTAAAAATTTCGAATTTTTTGAAGATGATACAGTTATATGT
GGATTTCTTAAAACAGGATGGACATAGTGCAACAGTCGAAGCAGCTCACA
AGGGAAAGACAATGTTTAACAAGGGAAAAGCTGGATCGTGGAAGGCTCTG
TTTACACCAGACATGACCAAACAAATGGAAGAATGGGAATCGAAATGGTT
GAAAGATTATGATCTTAAATTCATTTATGAATAAATGATTTACATGCTTC
GAAACCCAAGAGATGTTTGCCAATCACTTCACAGTCACTTCTATACACTC
CAAGATGGCTTTTCTGGATCTTTACAAGATGTTGTTAATCTCATGACCGA
TGATGCTGGATTCTATTCTGGTCCGTTTTTTAAACATGTTTTGGGATACT
GGAAACGACGCTCTTATGAAAATATACTCATCATTTTTTACGAAGAAATG
AAAAAAGATTTATCCGGTCATATTAAGAAGATTGCTGATTTCTTAGACAT
TGAAATTTCAGATGAAGAAGTTTCAAATCTGGCCAAACATTTTTCCTTTG
ATTCGATGAAACGAAAAGCAGAGCAAATGATTCCCTTCCATGCAAAGCAG
CATTGTTATGGGTATAGGAGATTTCGATACTGACAACAACAAAGCTAACG
ATGAGATTTTTTCGTCGATGAAGCGACCACGTGTTATCAAAATGCATCTT
TCATATGAATTATTACCAAGACAATTTCAACAAAAGCAACCTAAGGTACG
AATTGGTGCGAACGGATTGTTTGGGCACTCCGTAATGATATCAAGTTGAA
CATTCAACACGCACCCCCTGTATCAGTTTTTGGATGTCTTGCAATTTTTT
GAATATTTTAACAACTTACAGGAAAGGCAGAATGGACGAGGGTAAAGACA
TACAAGAATATCATAGCGAGCCATTGGAGAGCAAATTCATGACTCCCTTT
GCCAACATACCTTACGTTTCTAATGTACATTACGCTCGGCCTTCAGATGT
TTTTATACCGAAAGGTTATTTTCAAAACATTGCAGAAATTAAAAATTTCG
AATTTTTTGAAGATGATACAGTTATATGTGGATTTCTTAAAACAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11548MSTRG.11548Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11548.5.p1MSTRG.11548.5.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11548.5.p1.exon5MSTRG.11548.5.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.5.p1.exon4MSTRG.11548.5.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.5.p1.exon3MSTRG.11548.5.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.5.p1.exon2MSTRG.11548.5.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.5.p1.exon1MSTRG.11548.5.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:254603..258669 -