MSTRG.11548.4.p1 (mRNA) -

Overview
NameMSTRG.11548.4.p1
Unique NameMSTRG.11548.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:254543..258669-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11548.4.p1 ID=MSTRG.11548.4.p1|Name=MSTRG.11548.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4127bp|location=Sequence derived from alignment at sc0000084_pilon:254543..258669- (Clytia hemisphaerica_ch_hm2_pilon)
AGTTATTAAAGATCTAACATAATCGGATTATCATTTATTATATGTCTTGC
AATTTTTTGAATATTTTAACAACTTACAGGAAAGGCAGAATGGACGAGGG
TAAAGACATACAAGAATATCATAGCGAGCCATTGGAGAGCAAATTCATGA
CTCCCTTTGCCAACATACCTTACGTTTCTAATGTACATTACGCTCGGCCT
TCAGATGTTTTTATACCGAAAGGTTATTTTCAAAACATTGCAGAAATTAA
AAATTTCGAATTTTTTGAAGATGATACAGTTATATGTGGATTTCTTAAAA
CAGGTAGCGTTAGTATTGAACTTTTTTTTTTGTTTGTACATGTGTATATT
GAGCATCGATATTTCGATTTTTCTATACCCTTCTGGACGTGTGTTTCACC
TCTTGACAATATAATCTTCTACCCCATTTGTACAGTGTTATTGTTTGTGG
AGAGTCATTTTTCCTGAGCGATTTAGACCAAGAAAAACTTTGAAGTCTTA
TTTTGAGAAAATTTATTCGCTTAAGGTACTCTGAAGCTCTCGAGCTGTCA
AGCTGTAGAGGTAGGAAATTTTATACTTTCAGGTTTTGGTACTTAAGTTC
AGACTAGTTAGACAGTTTTGGATGAAAGACTTGAATCTAGAGACTCTCTA
TAGAAACGTTAATGTAATGATGTTTTATCGATGATTTTAGGTACGAATTG
GTGCGAACGGATTGTTTGGGCACTCCGTAATGATATCAAGTTGAACATTC
AACACGCACCCCCTGTATCAGTTTTTGGGTAAGTGAATGTATTACCTGTA
CCTGACGACCACGGCTTTTTCCTCGACACCGTTCAAAACAGAGTGATAAA
AAATCGCGTGTTGGGATAGAACGCGGGCATTTTTTTCCGCTTTATCCCAC
TAAAACGGTCCCAATCTTTTTCTCGCAGAAATAGACAAAAGATGATACGT
CATGCGTCAAAAAAGGATTGGGATGAGATAAAACTGACAAAAAATGATCG
CGCGACTACGGTCAAAAAGGTGTATCAGCGACGTATCGATACGCCATTGT
CTCCAGTGGGAAAAACGTCCTTCAATTTCCACCCTACTGGAAAATTTTGC
GTATTTTAACGTTTTTCAGAAATTAAATATCGGGAGAAAATTGTAGTTTC
AGTACTTCCACTTTGTTTCATTGGATTTTTTGATTTGTGAGGGGTTAAAT
GGCTTCCAGGCTTTATTTAAAACTTAGAGTTAAAACTCTACTTTCCAACC
GTACTTTAAAGCACTTAAAAATAAATTACGGTTTTCAAATTTGAGGGAAT
TCTCCTTTTGAGCTAAATATTACGGCGGGGATTGTGGGGGAGCAAGAAAA
CTAAAACAACGGTCCCCCTGTTTTGTTATCCCCATCTAAGATGAACAAAA
TATTTGAAACAGAAAATAGTAATAGAAGACAAAGGAGATGTTTTAAATAG
TTGCCACTCTCTCATTCGTGTTCAAGAAGTCAAGAATATTTGCTTCAAAT
AAGAGAAATATTTGAATTAGAGAGAACTTTCCACCAGAGGGAACCAATGG
TTTAGTTCTGATTACAGATAAATTCGAATTAAAAAGGTTTGAATTAAAAA
AATATGACAATAGGAAAATATTAGATAGAGAGTTGCCCTGGTTTGGGAAA
ATTTCGTAATCCAAACAAAACTTTTCAGATGTTTAAAAGTTACTCAAACA
TCAAGCACTGTCTCGACTGTCTTACCAAAGAATTATCATCTTTCAATATC
ACAGCATTGTTATGGGTATAGGAGATTTCGATACTGACAACAACAAAGCT
AACGATGAGATTTTTTCGTCGATGAAGCGACCACGTGTTATCAAAATGCA
TCTTTCATATGAATTATTACCAAGACAATTTCAACAAAAGCAACCTAAGG
TATTTGTACTCTTTTTCACCTGCAAACATCAATAGAATCTGATAAAGCAA
TTTCAAAATAAGGCTAAAATAGGGCGATGTTGAAAACTTTCATACGTGGT
TTGGTAATACATAGCAAACAAAATAGATAAATTACAAGGCTAGTCAAATT
ATACTCACTACCTGAGTACACGTTTATCGTTTCATAGTACTCTACGAAAA
ATCAATTAAAAAATTTTCTGTAGATAACGGGACTGTTTACATACAAGTCA
GATTACAGAAACCCAAAAATTCGACGTAAATTAACGAAAGCATTTTTCCA
TAGTGACCGTAGTACAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTG
TGGGTTCAACCCCCAGCTGGGTCATACCAAAGATTCTCAAAGTGGTACTT
GATGCCTCTTTGCTTGATGCTCAGCAATAGACGATATCTGATTTAGATAA
ATGCAATGCATTCTGGTTTCTAGGGACTCTCAAAGGAATTATAATAGATC
AATTATAATAGATTATAATTCCTTTGAGAGTCCCTAGAAACCAGAATGCA
TTGCATTTATCTAAATCCGATATCGTCTATTAAGAGAACGATCCAGGGAG
AAAGAGTGGCACCCTCCTCTACCTTCAGGGAGTTAGTTATCGAAATAGGA
GCCTTCTGGACGCCTCCGACTGCAGTCGACTTACTTACTTTTTTCTTTCT
TTATATCACAATAGATGATTTACATGCTTCGAAACCCAAGAGATGTTTGC
CAATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGATC
TTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTG
GTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATGAA
AATATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGTCA
TATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGAAG
TTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCA
GAGCAAATGATTCCCTTCCATGCAAAGCAGGTCAGTGTGAAACGATTTTT
TCAAAATCTTTGCTGAAGATGAGTAAAATTAATAAAAAAATGATGCCGTC
ATAATTAACAAATAACGTCGAAATTTTTTACATTGAATTTTGAGATTTAG
TAAAATTACCAAAAGTTTTTGAAAATTTAAAGTAATTGGCTTTATGGATT
TCAATGAATTCCACGATTTTGTGATTATTCAGGATGTTAGCTGGATTTTA
TGACCAATGTTGCAATAAAGTCATAAATGGGTTTTTTGACTCAAAATTTT
GTAGACTTATGCATTAAAAGATTTTGTTAAAGTCAGAAAGTTTTGCGTGC
TTTGAAAAATGTAAAAGAGTGCAGGGATGGTTTAAATTACATCCTGGTAA
AAATAAAGTTTAATCCATAGATTTCTAAAGCCCGAAAGGGCTAGATGTCG
CGCTTTGGCTGGAAAGTGTACCGTATCTCGGTAGAAAATTCTACCTATGT
CACGTGACATTACAATAGAATTTCAGCCCTTGACAAATCAGAAGCTTTGC
GGATTTTTGAGAATAGCAGCTATATTTCTTGCGCAATTTCCTTTTTTTCG
CCTGTGATTGGCTTAAAGCACGACATCTAGCCCTTCGGGCTTTATAAATT
ATTGGTTTAATCCAGGTGAAGGAGGAGAAATAACTCGTATACAAAAAAGA
AGGAGACCTCTGTGGTATTGTATCAACCTTTGTCAGCTTCGCCCTTGTAC
TATAGCACTTTGTAATAATTAACCTGCCACACTTTGTAATAAAAATCAAC
ACATTTTGTTTTTACAAATTGAACAATTTTCCAGGATGGACATAGTGCAA
CAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAGGGAAAAGCT
GGATCGTGGAAGGCTCTGTTTACACCAGACATGACCAAACAAATGGAAGA
ATGGGAATCGAAATGGTTGAAAGATTATGATCTTAAATTCATTTATGAAT
AAATAGTATTGTAATAATAGAATTTAATAGAATAGAATAGAATTTTGAAA
CGAGTAAAATGAAACATACGTTGTATTAGAATTTCAATTTTCCATTTCTG
TGTCCGTGTAATCCAAACGAGGAAAATCAAGTACACAAACTCTTTTTGTT
GAAATAATCCGGTTATTTTGTATATTT

Coding sequence (CDS) from alignment at sc0000084_pilon:254543..258669-

>MSTRG.11548.4.p1 ID=MSTRG.11548.4.p1|Name=MSTRG.11548.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4740bp|location=Sequence derived from alignment at sc0000084_pilon:254543..258669- (Clytia hemisphaerica_ch_hm2_pilon)
GATGGACATAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTT
TAACAAGGGAAAAGCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGA
CCAAACAAATGGAAGAATGGGAATCGAAATGGTTGAAAGATTATGATCTT
AAATTCATTTATGAATAAATGATTTACATGCTTCGAAACCCAAGAGATGT
TTGCCAATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTG
GATCTTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTAT
TCTGGTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTA
TGAAAATATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCG
GTCATATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAA
GAAGTTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAA
AGCAGAGCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATA
GGAGATTTCGATACTGACAACAACAAAGCTAACGATGAGATTTTTTCGTC
GATGAAGCGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTAC
CAAGACAATTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGA
TTGTTTGGGCACTCCGTAATGATATCAAGTTGAACATTCAACACGCACCC
CCTGTATCAGTTTTTGGATGTCTTGCAATTTTTTGAATATTTTAACAACT
TACAGGAAAGGCAGAATGGACGAGGGTAAAGACATACAAGAATATCATAG
CGAGCCATTGGAGAGCAAATTCATGACTCCCTTTGCCAACATACCTTACG
TTTCTAATGTACATTACGCTCGGCCTTCAGATGTTTTTATACCGAAAGGA
TGGACATAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTA
ACAAGGGAAAAGCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGACC
AAACAAATGGAAGAATGGGAATCGAAATGGTTGAAAGATTATGATCTTAA
ATTCATTTATGAATAAATGATTTACATGCTTCGAAACCCAAGAGATGTTT
GCCAATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGA
TCTTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTC
TGGTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATG
AAAATATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGT
CATATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGA
AGTTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAG
CAGAGCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATAGG
AGATTTCGATACTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCGA
TGAAGCGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTACCA
AGACAATTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGATT
GTTTGGGCACTCCGTAATGATATCAAGTTGAACATTCAACACGCACCCCC
TGTATCAGTTTTTGGATGTCTTGCAATTTTTTGAATATTTTAACAACTTA
CAGGAAAGGCAGAATGGACGAGGGTAAAGACATACAAGAATATCATAGCG
AGCCATTGGAGAGCAAATTCATGACTCCCTTTGCCAACATACCTTACGTT
TCTAATGTACATTACGCTCGGCCTTCAGATGTTTTTATACCGAAAGGATG
GACATAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAAC
AAGGGAAAAGCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGACCAA
ACAAATGGAAGAATGGGAATCGAAATGGTTGAAAGATTATGATCTTAAAT
TCATTTATGAATAAATGATTTACATGCTTCGAAACCCAAGAGATGTTTGC
CAATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGATC
TTTACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTG
GTCCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATGAA
AATATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGTCA
TATTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGAAG
TTTCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCA
GAGCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATAGGAG
ATTTCGATACTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCGATG
AAGCGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTACCAAG
ACAATTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGATTGT
TTGGGCACTCCGTAATGATATCAAGTTGAACATTCAACACGCACCCCCTG
TATCAGTTTTTGGATGTCTTGCAATTTTTTGAATATTTTAACAACTTACA
GGAAAGGCAGAATGGACGAGGGTAAAGACATACAAGAATATCATAGCGAG
CCATTGGAGAGCAAATTCATGACTCCCTTTGCCAACATACCTTACGTTTC
TAATGTACATTACGCTCGGCCTTCAGATGTTTTTATACCGAAAGGATGGA
CATAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAA
GGGAAAAGCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGACCAAAC
AAATGGAAGAATGGGAATCGAAATGGTTGAAAGATTATGATCTTAAATTC
ATTTATGAATAAATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCA
ATCACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGATCTT
TACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTGGT
CCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATGAAAA
TATACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGTCATA
TTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGAAGTT
TCAAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGA
GCAAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATAGGAGAT
TTCGATACTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCGATGAA
GCGACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTACCAAGAC
AATTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGATTGTTT
GGGCACTCCGTAATGATATCAAGTTGAACATTCAACACGCACCCCCTGTA
TCAGTTTTTGGATGTCTTGCAATTTTTTGAATATTTTAACAACTTACAGG
AAAGGCAGAATGGACGAGGGTAAAGACATACAAGAATATCATAGCGAGCC
ATTGGAGAGCAAATTCATGACTCCCTTTGCCAACATACCTTACGTTTCTA
ATGTACATTACGCTCGGCCTTCAGATGTTTTTATACCGAAAGGATGGACA
TAGTGCAACAGTCGAAGCAGCTCACAAGGGAAAGACAATGTTTAACAAGG
GAAAAGCTGGATCGTGGAAGGCTCTGTTTACACCAGACATGACCAAACAA
ATGGAAGAATGGGAATCGAAATGGTTGAAAGATTATGATCTTAAATTCAT
TTATGAATAAATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAAT
CACTTCACAGTCACTTCTATACACTCCAAGATGGCTTTTCTGGATCTTTA
CAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTGGTCC
GTTTTTTAAACATGTTTTGGGATACTGGAAACGACGCTCTTATGAAAATA
TACTCATCATTTTTTACGAAGAAATGAAAAAAGATTTATCCGGTCATATT
AAGAAGATTGCTGATTTCTTAGACATTGAAATTTCAGATGAAGAAGTTTC
AAATCTGGCCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGC
AAATGATTCCCTTCCATGCAAAGCAGCATTGTTATGGGTATAGGAGATTT
CGATACTGACAACAACAAAGCTAACGATGAGATTTTTTCGTCGATGAAGC
GACCACGTGTTATCAAAATGCATCTTTCATATGAATTATTACCAAGACAA
TTTCAACAAAAGCAACCTAAGGTACGAATTGGTGCGAACGGATTGTTTGG
GCACTCCGTAATGATATCAAGTTGAACATTCAACACGCACCCCCTGTATC
AGTTTTTGGATGTCTTGCAATTTTTTGAATATTTTAACAACTTACAGGAA
AGGCAGAATGGACGAGGGTAAAGACATACAAGAATATCATAGCGAGCCAT
TGGAGAGCAAATTCATGACTCCCTTTGCCAACATACCTTACGTTTCTAAT
GTACATTACGCTCGGCCTTCAGATGTTTTTATACCGAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11548MSTRG.11548Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11548.4.p1MSTRG.11548.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11548.4.p1.exon5MSTRG.11548.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.4.p1.exon4MSTRG.11548.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.4.p1.exon3MSTRG.11548.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.4.p1.exon2MSTRG.11548.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11548.4.p1.exon1MSTRG.11548.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:254543..258669 -