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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000084_pilon:212507..218340+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11545.1.p1 ID=MSTRG.11545.1.p1|Name=MSTRG.11545.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5834bp|location=Sequence derived from alignment at sc0000084_pilon:212507..218340+ (Clytia hemisphaerica_ch_hm2_pilon)
AGCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACTTTTC
TGTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGAAGGT
AAcggaaatttcattttcaaacctACCCGGAGGTCCTATGAGTACAGTCA
AGTCTAATCTCATCTCCATAAACCGAATGTCTTCAACAATCTTCTTGAGG
CTTTTTGTCTCTCCATGACTCGAACAATCACTTCCCTTGACTGGTATTTT
ATAGCTTTTGTATTTTCTGAAGATTTTAATGAGTTATCATCATCGATAAT
TTTTAAtgacattgggctcttccagaaaatttttgtacgtggggggggga
tggaggatatattggatattttggatattttgtccggggcaaaatttgat
ttgtttttgggACAAACTTTctctgtttaggggtaattttgaatgtccag
gggatcaactgatgcttgtccgggggtgaaatctgttgtccggggggtca
aaacTCACAATGTCCGGGGAACAAATTTCCACAAAGTGTTATATTCTCCA
CCatccccctccccctcccccatattcaatttttttctgaaacagcCCAT
TTCCAGGAGGGTGCATTGTAAATCCAAGTCGGCAATGTCCCAAAATAACA
AATTCCTTGATCTTCTATTTCTTTCTCGAACGTTTTTAATTAAATGTTAA
CCGAAAGGATTTTCTGATTTAATAGAACAAACTACAATCATTGACAAAAC
CTATGGCACAAAGCCCAAAAATTAGTTAGCTCCCTCTCTCCCCCAAACAA
TGTTGTCGAAGGGGGCTAAAGACCGGCAAAAGAATATTTCTTTCCCAGCA
GCATTTTTCGGAGGGGAGAGGGAGGTTATTGCCCTGTGTCTAAATTTGAC
CGCTGGAAATGTGCAATAATATATTGGCAACAATTGTAGATGTTCGCAct
gttttttctcatttctctAGGGGGAATGATCTTATATACCAATGCTGGAA
GATGCCTTTGTCAAAAAAGGGATTACTGTGAAAACGGCCGTATGAACTTT
GATGAAAGTGACGGTAAACCTGTTGAGCATTGTTGCCATTGGGGTAATCT
GGTGTCTTTGGATTGCAACAAACACTTGAACTTCGTTTCAAATGGAGAAC
CCGTTTATGAGACACATAGTGAGttgaattaaaaaattctttgttatttC
TTCGCAACAGGAATCAtgtgatttatttttcaactaatAAGTGATTTAAT
tcaaaacacccccttctcacagatccactgggaCCTCTTCCCACTGGTAa
agttggccaaaatatcgtccccggtggaaaatattactccaatttttgtc
cccaccgaaaataatcgaataaaccaatcctcactgcaaactattatgct
atttttcccatcatctttgaattttctgacttgaaaacaaaagaatttaa
atcccctgccataaaaaatatgtgaatatcaatcccaatcgagtttcaag
acgatatttttttattcctACTGGCTGAAAAAGTCCTATCAGGTCaatga
gaaaggggtgttttaGAATAAGAAgattttattatcaaaacacACACGGC
ATAATTGAATTCAAAACTCTTTTCAAACGAACTTCTTTGGACAACCACAt
gtccgccaaaatttctttctttaaggtACTGTATTCGATGATGCCGTAAA
GATTCACTTTTCATATGGACTACTTCATAATGgaatcttttcaacaaaaa
gtgaTTTAAGACaaaaaaaaGCGAACTTAGTGCTTTATTAGAAGTCGAat
tttagattaaaatataatcCATTCATTCTTCTGATGTGATGTTTTGTAGT
ACCAGAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGATG
TCAGAACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGGA
TTAACAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAGA
TCGAATTCGTGTTCATTTTTGTCAAAGTAAGTTAATTCTCACAACAGGTG
TTTTAGCCTGGGGTTCACTTACGCgcggttttcacacaaacgtctgattg
aaagtaaaagtgaaatatttcgaaaaatatgccgcttaaaaaacaaagaa
aaggctagattcaatccgtcgttcTAAATGCAGCGCAAATCTTAaggatt
cactttttcttgtttgagaaaggttgaagattcctttcTAAGCGCCTTCG
GGGCTCTAAACTGAATGGTCTATACAGGTTTTCAGATTTGGCTACATTGT
ATGATTTTACAGTTGAGTACATAAGGAAAAGAAACAGAGTCCCTCGTTAC
TCTATCCCGGCTCTACCGACTTACTTTCTAATTTACAGCTACTATCTCTG
TATACACGATGAAAATAACATCCCCGGACAATTTTATGATGACTTTCGAT
TTCGATCGACTCGGACGGTTTACATTCGATGCTGCAGCCTTTCCGGCGTA
AGTATCGGATTGATGAAAGAAACTAGTTTGGTTTAAATCAGCCATTCCAT
AAAGTATTTATTTTCagcagaaaataaaaataaaaataaaacttgttgtT
TTTTACTTATTATGATCAAAGAAACGATtcggaagcgctctaaattagct
TGGAAGGGTAAAGTTTTAACTCTAAGATTCAACACTAGACTtagggctct
gaccataatgaattttttatattttccatcTATAAAATATAGTTTTCTgc
ctgatgtaaccaacaaaatcatggcatgttatacattttctgttacgCCA
ACTAGTcgtaaatctaaaaatttgaaaatcataatgaaaaaaaaaattga
cgaagaagaaaatgaagagatTTTCGGAAAtgttttgtaaaagcttcttt
gtctcaaaatcttgaaaatagtggtttttaaCCAATTTTACATCccaatt
ttttgtagaaaacaaCCATAATTTTCGATACATTAGGTTAGAAAATTTCT
TCCGAAAATTTCTTTGcggatatttaaaaaaagtttgaaacaaaaaggtt
aattacccattaaaacttagcactttttgatgaagagggtaatataacat
tttattttaacgtatttttaaagttcataacgtcattttgtAACTaattt
cttaattactcttCAGGGATAAAATTACCAAACAACTTGTAAAGTCAGTT
TTTCGTTGAAAGTGTCAAGGaacccaaaacaaaagttttatcttaaAATC
CCTTATCAAATTTCTGACTATGATCAGAGTccttaagacttacgacctta
tGATCTGAGGTTCCAAAAGTTAAAGAATGGTCctatagggctcagaatat
aacctggaagtctataaacccctcccgaattgaaatactcggataaattt
atcaattagcccaaaagggATTTTCTCGCCCGatctccaaatttcgaaaa
acgaggaaataagctaaattctcaatagattttgaccatgattatacaat
ggcttctttgagGGTActactttaaagaaaaactccgatcaaatatGGTC
AATAAAGCTTGGTCCAGAGTTTGTAACGGTCAGTTGTTCCATACTATTCT
TCCGTCCATAGGCTTTACGAGTGAGTTTATGTTTTCGAGATAAAAAGGTA
TAAAGCCCAGACCACTTTGCTTGACGACATTAAAAAtgccaaaataccgt
cgtctgtttaggtaagCAAAGAGTGCGTAGCGTCGTatataaacataaaa
atgttTATGGGTAAAAGGTCGGGGTTAAGTTTAATAATGTCCTTTAAAGT
CataacttttccaaaaaaaaagctTCAGAAATAAAAGTTATTTGGACTAT
ATTACTAGAAAGAGATTTAATCACAAATTGATAATGTTATAATTTTCCCT
AAAATTTCAGACAACTCCAACTACCCCTCACTCACCTTTATTACCTATCG
ACTTATTTCTAGACCGAAGGAAGCCGTGTATGTACGAGAATTGAACCCAA
ACGTCAATCTTACATCAAATGAAATGGCTATTCAATTCAAAAAAGGAATC
GAAACTATTAATTTATTCATATTTGTAAAGGTAtctgatatcgtttgctt
actcatcaattttgatttacaagattttttccattgaagaggaaaataaa
aacaactttttgcttttatcagcataatataacaataggcagacactgtc
ctgatatgaaatatgtgcatAATATGAATATTCATGacatgcaccattgc
aatgccTTCCACGGaccaaacagctgattggttgaaagtgacgtattgac
tgattttacgtcacttacaaccaatcagttaTTGGTGCACATCATGAATT
GGCTGAAACAAAACAAtcaatagactttttcataaattacgttacgaaca
tcacttgtctcgttttcaaattattgccatggtgattaactctcagtgga
ttttattaaaactacttcctattcataaaaaaatcatttaatgtcttaAG
GGACTTATataccatggtaattgtttgaatacgaggcaagtgatgtccgt
gacgtaatttatgaaaaggtctatcgcaTTATAAAATATAGATTAGAACT
TAGTCGCAACGTGGTAACGCGGTCTTTTGGCTGAATATTTCTCTGACTAG
TTCATATCATAAGAGTATcatctgcgaaatttaatccctgagAAACTGGG
AAacaataattacaaggtctcaaaagaaggaaacacccctgtctcagtgc
cccggtggcatgatttcagtacatgatttttttcagtacatggtttcagt
acatgattttttcctacgtcactgcagtaatcaaatttttattgcactca
tttgtaatcatcctaaatggcttgggaattcaagaactgttttttattgt
cgctgtctttattcaatttatatctcaattcacaaatgagtgcaataaaa
atttgattactgcagtgacgtaggaaaaaatcaccggggcactgagacag
gggtgtaaggaaaaccgacatcgactttttatttctgcctatcttctctg
aggctgatttctgaccccctggtgacttttcTAACTTACTTACTATGTTT
TCTGTCTATTCTAATGTGTTTTTAACTGACCTTGAattatcgacccgacc
ggggttcgaacccaccaaatgaaagagcttctgatcagaaacccagcgcg
ctatccgttgagcaacactcgcacagcagaatacaaaatttggaaatact
tattgaatgaaaaaaagacgggggtaatgttattataatatgagtaaaat
tgccccttctttaacctgactgaaattcgagccgttactagcaaccctgc
ggggcccaaggcgccgagtatgcacccggcacagtgacaagccgctACTA
GCAatcctgacctaagcaattccaaacaacaaaacccccggaaaattttt
tccttattttgagACATTGTAATTATTGTTTCCCTGAGAAACTACCCtag
taatacaccttttcgaccgtagctgccaattgccgcACAGGTATTTCTTT
Gtctgctttatcccactaaactcgatccaatccttttttgacacattttt
ctattgtctatagatgcgaaaaaaggactgggacggttttagtggacAAA
AGAAACCCGCGCGTCAAttggcgactacggtcgaaaaggtgtatataaCC
TCATTCACActcttatattttttgttttaaggtTGTAGTGGAATACATTC
CAAAGGCAATCAAACTGGTTTATGACGGTGCGGTCAATCCCTTGCATACA
CTAAGCGCAGTGCAACCTCATGAGTTCTTGCAAG Coding sequence (CDS) from alignment at sc0000084_pilon:212507..218340+ >MSTRG.11545.1.p1 ID=MSTRG.11545.1.p1|Name=MSTRG.11545.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4806bp|location=Sequence derived from alignment at sc0000084_pilon:212507..218340+ (Clytia hemisphaerica_ch_hm2_pilon)
GCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACTTTTCT
GTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGAAGGGG
GAATGATCTTATATACCAATGCTGGAAGATGCCTTTGTCAAAAAAGGGAT
TACTGTGAAAACGGCCGTATGAACTTTGATGAAAGTGACGGTAAACCTGT
TGAGCATTGTTGCCATTGGGGTAATCTGGTGTCTTTGGATTGCAACAAAC
ACTTGAACTTCGTTTCAAATGGAGAACCCGTTTATGAGACACATATACCA
GAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGATGTCAG
AACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGGATTAA
CAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAGATCGA
ATTCGTGTTCATTTTTGTCAAACTACTATCTCTGTATACACGATGAAAAT
AACATCCCCGGACAATTTTATGATGACTTTCGATTTCGATCGACTCGGAC
GGTTTACATTCGATGCTGCAGCCTTTCCGGCACCGAAGGAAGCCGTGTAT
GTACGAGAATTGAACCCAAACGTCAATCTTACATCAAATGAAATGGCTAT
TCAATTCAAAAAAGGAATCGAAACTATTAATTTATTCATATTTGTAAAGg
tTGTAGTGGAATACATTCCAAAGGCAATCAAACTGGTTTATGACGGTGCG
GTCAATCCCTTGCATACACTAAGCGCAGTGCAACCTCATGAGTTCTTGCA
AGCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACTTTTC
TGTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGAAGGG
GGAATGATCTTATATACCAATGCTGGAAGATGCCTTTGTCAAAAAAGGGA
TTACTGTGAAAACGGCCGTATGAACTTTGATGAAAGTGACGGTAAACCTG
TTGAGCATTGTTGCCATTGGGGTAATCTGGTGTCTTTGGATTGCAACAAA
CACTTGAACTTCGTTTCAAATGGAGAACCCGTTTATGAGACACATATACC
AGAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGATGTCA
GAACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGGATTA
ACAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAGATCG
AATTCGTGTTCATTTTTGTCAAACTACTATCTCTGTATACACGATGAAAA
TAACATCCCCGGACAATTTTATGATGACTTTCGATTTCGATCGACTCGGA
CGGTTTACATTCGATGCTGCAGCCTTTCCGGCACCGAAGGAAGCCGTGTA
TGTACGAGAATTGAACCCAAACGTCAATCTTACATCAAATGAAATGGCTA
TTCAATTCAAAAAAGGAATCGAAACTATTAATTTATTCATATTTGTAAAG
gtTGTAGTGGAATACATTCCAAAGGCAATCAAACTGGTTTATGACGGTGC
GGTCAATCCCTTGCATACACTAAGCGCAGTGCAACCTCATGAGTTCTTGC
AAGCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACTTTT
CTGTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGAAGG
GGGAATGATCTTATATACCAATGCTGGAAGATGCCTTTGTCAAAAAAGGG
ATTACTGTGAAAACGGCCGTATGAACTTTGATGAAAGTGACGGTAAACCT
GTTGAGCATTGTTGCCATTGGGGTAATCTGGTGTCTTTGGATTGCAACAA
ACACTTGAACTTCGTTTCAAATGGAGAACCCGTTTATGAGACACATATAC
CAGAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGATGTC
AGAACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGGATT
AACAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAGATC
GAATTCGTGTTCATTTTTGTCAAACTACTATCTCTGTATACACGATGAAA
ATAACATCCCCGGACAATTTTATGATGACTTTCGATTTCGATCGACTCGG
ACGGTTTACATTCGATGCTGCAGCCTTTCCGGCACCGAAGGAAGCCGTGT
ATGTACGAGAATTGAACCCAAACGTCAATCTTACATCAAATGAAATGGCT
ATTCAATTCAAAAAAGGAATCGAAACTATTAATTTATTCATATTTGTAAA
GgtTGTAGTGGAATACATTCCAAAGGCAATCAAACTGGTTTATGACGGTG
CGGTCAATCCCTTGCATACACTAAGCGCAGTGCAACCTCATGAGTTCTTG
CAAGCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACTTT
TCTGTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGAAG
GGGGAATGATCTTATATACCAATGCTGGAAGATGCCTTTGTCAAAAAAGG
GATTACTGTGAAAACGGCCGTATGAACTTTGATGAAAGTGACGGTAAACC
TGTTGAGCATTGTTGCCATTGGGGTAATCTGGTGTCTTTGGATTGCAACA
AACACTTGAACTTCGTTTCAAATGGAGAACCCGTTTATGAGACACATATA
CCAGAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGATGT
CAGAACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGGAT
TAACAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAGAT
CGAATTCGTGTTCATTTTTGTCAAACTACTATCTCTGTATACACGATGAA
AATAACATCCCCGGACAATTTTATGATGACTTTCGATTTCGATCGACTCG
GACGGTTTACATTCGATGCTGCAGCCTTTCCGGCACCGAAGGAAGCCGTG
TATGTACGAGAATTGAACCCAAACGTCAATCTTACATCAAATGAAATGGC
TATTCAATTCAAAAAAGGAATCGAAACTATTAATTTATTCATATTTGTAA
AGgtTGTAGTGGAATACATTCCAAAGGCAATCAAACTGGTTTATGACGGT
GCGGTCAATCCCTTGCATACACTAAGCGCAGTGCAACCTCATGAGTTCTT
GCAAGCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACTT
TTCTGTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGAA
GGGGGAATGATCTTATATACCAATGCTGGAAGATGCCTTTGTCAAAAAAG
GGATTACTGTGAAAACGGCCGTATGAACTTTGATGAAAGTGACGGTAAAC
CTGTTGAGCATTGTTGCCATTGGGGTAATCTGGTGTCTTTGGATTGCAAC
AAACACTTGAACTTCGTTTCAAATGGAGAACCCGTTTATGAGACACATAT
ACCAGAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGATG
TCAGAACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGGA
TTAACAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAGA
TCGAATTCGTGTTCATTTTTGTCAAACTACTATCTCTGTATACACGATGA
AAATAACATCCCCGGACAATTTTATGATGACTTTCGATTTCGATCGACTC
GGACGGTTTACATTCGATGCTGCAGCCTTTCCGGCACCGAAGGAAGCCGT
GTATGTACGAGAATTGAACCCAAACGTCAATCTTACATCAAATGAAATGG
CTATTCAATTCAAAAAAGGAATCGAAACTATTAATTTATTCATATTTGTA
AAGgtTGTAGTGGAATACATTCCAAAGGCAATCAAACTGGTTTATGACGG
TGCGGTCAATCCCTTGCATACACTAAGCGCAGTGCAACCTCATGAGTTCT
TGCAAGCTTCGAATCAAATCAgtcaaataatgatgaaatGGCAAATAACT
TTTCTGTTATCATTCCTATCTGTGTTCATTGGAAACACTATTCAATATGA
AGGGGGAATGATCTTATATACCAATGCTGGAAGATGCCTTTGTCAAAAAA
GGGATTACTGTGAAAACGGCCGTATGAACTTTGATGAAAGTGACGGTAAA
CCTGTTGAGCATTGTTGCCATTGGGGTAATCTGGTGTCTTTGGATTGCAA
CAAACACTTGAACTTCGTTTCAAATGGAGAACCCGTTTATGAGACACATA
TACCAGAACCCAAAGGACGAAGCCTTGTCATATACAAAAGTACAAGTGAT
GTCAGAACCAACGATAAGAATAGAAAACTCTTCTTGAATGAGACTGGAGG
ATTAACAGCGGATTCCGGCATTTACTTCAATTATAATGGACCATCAGGAG
ATCGAATTCGTGTTCATTTTTGTCAAACTACTATCTCTGTATACACGATG
AAAATAACATCCCCGGACAATTTTATGATGACTTTCGATTTCGATCGACT
CGGACGGTTTACATTCGATGCTGCAGCCTTTCCGGCACCGAAGGAAGCCG
TGTATGTACGAGAATTGAACCCAAACGTCAATCTTACATCAAATGAAATG
GCTATTCAATTCAAAAAAGGAATCGAAACTATTAATTTATTCATATTTGT
AAAGgtTGTAGTGGAATACATTCCAAAGGCAATCAAACTGGTTTATGACG
GTGCGGTCAATCCCTTGCATACACTAAGCGCAGTGCAACCTCATGAGTTC
TTGCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084_pilon | genome | sc0000084_pilon:212507..218340 + |
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