MSTRG.11528.2.p2 (mRNA) -

Overview
NameMSTRG.11528.2.p2
Unique NameMSTRG.11528.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:7669..15170+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11528.2.p2 ID=MSTRG.11528.2.p2|Name=MSTRG.11528.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7502bp|location=Sequence derived from alignment at sc0000084_pilon:7669..15170+ (Clytia hemisphaerica_ch_hm2_pilon)
tGAATCAAATGTCAGTTGTAACCCACAGAGTAAAGACTTGTTTCTTGAAA
GAGTTAAAACATTCACGGTATGGTAAAATTTTTCATTGTAACCTTTTTAA
ATCTCTAGTTAAACTATTATTGAAAACAGTTTTGTCTATTTCAAATCAGT
TTTATATTAAATATTGTTGAATTCCCTAAAACTTATTCACAAGAGCTGAG
GTAATCCATTCTAATTCTGGCAGGAATTAAATTTGGGGGGATTAGCAAAA
AGGCAAAActccccaaaattttaaaattgtttttgttgtaCTAGTAGTGA
AAGTATTGGCCAAAAGTAGCCACCCTTTAGCCAACCAACGAATTAAGTTT
CATtatatttgattaaaaaatgatagtaaaaaaaaaaaactgtaaaaTAA
AGTATATCATAATCGCTTTTCTCATAGACAACTAACTGGGCAGCAAAACC
AAATGAGTTATCACCCTTGAAATGTGCTCAATATGGTTGGTGCAATGAAG
AACTTGACCAGTTGAGATGTGTCACATGCAGTGCTACCATATTTGCTGGT
ATGCCTGATGATTGGGATTCCTCAGCTTGTAAGCTTATACtaaatgtttt
agatttttatagatttttggtaaaatcaaaCCTGAACCAAGACAAGACAA
GAGATCTAGATCCTCCAGTACTATGATTCTAAGACTTGATTTATTAtaat
gttaaaaattcaaagtttaaaCTTCCAATACTTTCAGTGTTCTGTATTTA
TTGGCTTTTGGGATTGTCAAGGACGCCTTCGGAATATTTTTGGCATGAAA
GAGCTGTGCCttttaattatttatgtatttgattatcaaattttaattca
taagtattttcttttttagattctGACATTTGTAATGAGATCAAAGACAA
ATTGAAAATTGGACATCAAAAGCTCTGTCCTTGGCCACAGAACCCCTGCC
CACCATCCTTTTTGAGTTTACCCTCACGCTCAGCACAACAATGGAAAATG
GAGATTCGGTCAGCATTTTGTGGGTTGCTGGAGTTGAAAGGAAATCTACC
TGAGTTGAATGAAGATACTGTAGCATCAATGGTAAAATTCTTAAATATTT
TAGGTTACACTGTTATtttatataagcataacgtttaaaTAAGCACTCAA
ATtcggtaaaaaataagcataatgctaaaGCGTACcctccaagctgaaat
gcaaatAGAATTCTTGCTGCTTTTCTAAGACGCTGACTTTTTTAGGGTTA
CTTTTGAAGCTGTTTGAGCTTTTTAAGACCAAAGATTTTCACCTGCTGCT
CCAAATTACAAAGATAACTTTCATTCTTTGAGCTGAATCAATGTGCGact
taaaagttcaaaattttcatgaacccaaagaaaattcacgatttgaagtc
taagcatataaataagcataaattcaggctgaaaatgagattttgctaag
catattggGCCTCGACCGAATTTTCCAGTATGCTTaaaaaaaaGAGTATT
ACCATCATAGGTCCaatagtggggtcgtttagcataatttacaggaaaac
aataagataattcacgcagaagatgctatttatggtcaattttgaccaaa
gtgtggcgaaaagtggaacttgcgaatgaaatatctcgagttaggtaagg
aaatcagctataaccgtttcaaagtcttctatatagtttttcgagagctt
tcgaattatatacatgatattgtctgagaataagtttgaaattttcaaaa
aaatttcgcccttaggatttgccttgggaaaatagaaatgtcccaaaaaa
gggatgttccaccagtgggattttaggggaatttttcctgaggtataagc
atcctatagagaaggtctggagaaagtttcagctagatcttatttttttc
ctacaaacaacctgtatttttgtaacacgaccacactacaaTGGTAAAGT
CTTTCACCAGCTTtgcaaaaaaatagttttggcTCTTATAATCAACCTCT
TCTAAGaggttttcattttaaaaaatcacctgTTTTGCAATGATCCCGCT
GTGAGAGATAGAAAGAATCCAATTGGGCAACGATGGGAGAGTATCATAGG
GTCGATGAAtccatagaccttttcataaattacgtcacaaacatcacttg
acTCGTATTCAAACGATTACCATGGCGGTTATGTCTCTtaagacattaaa
tgattttttacgaatagaaagtagttttgataaaatccgaTGAGAGTTGA
TCACCAtggaaataaattcaaaacgaggcaattGTTGTTTGTGACGTAGT
TTATGCAAAGGTCTATTGACATTCTAATTTGAGGGGAACTAGCTGTGGTC
AATTGACCTGAAATTGGAATTCAAGCCTGGTCACACTCCATTAATAACAA
CAATAGAATATGCTATTGTTACTGGAGCATAATCAGGCTTTAACTCCaat
tatttgtttatttgaaaattgggTTTAATGTTTAGGAAATATTACATTCC
tttttttCTCTTAGAAAAGTCTGGATAACAGTTGCATCGAGAAGCTTTTG
ACAAACGTTTTTCGCCATTCTTGTGATACAGATGATGAAGTGTTACAGGC
TAAAGTTGCATGCATATTGGCTGTCACAGGCTGGAATGCAAGGTGAGAAT
TTCTAAATCTAATTTTACATCATGGGCTGTTCCATTGAATTTCCATACAG
GGAgctttttaagtcagaaaaagatttttagaaatgtgcTTGGTGCCCcc
tgaaaaatttgcaaaagagcccttggaaaaattctttccaTACCTTAAAT
AAAGTCAGTGTTTTGCTCACTGGAAAtataataactttttaccccctgga
aaatgaaaaaatactcctttagaccccctggaaattcttcacggaaatgt
tcgtccaccctctgtatggatataaaattgaATGGCCCATCAGTGAGGTT
AAGCATCGATAGACAAATCACAACGACAGATGAATTCGCGCCACGGCACT
TTTCTGCAGGCTAATCAGAAAGCAAGGTAAATTTACCTGCACAAATATAT
AAACTTTGCTTCTAAGACGAATTTCTGACTGtttttttGTTCTAGAAGCA
AAGCTGAAATACTATGATGATTGACTTTCCGAGATGAAGAAAAGTCTTTG
TCAATAACTCTCCCTAATTTAAGTCAACCCATTGATAATCAGACCCTATA
CGCTTAATTTGCCAAGAACCCTTCACATggtttttgtataatttattttt
aaatttaagtCAACCCATTGTTGAAGACCCATCTATCACGTGTTCATTAT
GTGGCAAAGAATCAGGTTTATGGCATTACAAGTCGCTCTCCAGTCGCCGG
AATGCCAAACAGCAAAAACTACATTTCGAATCCGCGACCTCACAACAATC
ATTATCTGAAGATTTTATGTCATCAAGAGTATCAGTCAAATCTGAGAACA
GTACACATTCGGGAAGTGTCACACACGAGCTCTCAAAACTGGCAACTAGT
AGCGACTCTTTAGCCCATTCAGACCTTTTGAAGCCAGCAGGATCTCAAGA
ATCGTTAGTCAATCTTAGGGTATCGGACAGTAAACACATGAGTATAGATC
ATGATCATGATGATGCAGACTCGATGGGAGGAGGACACTATCATAGCTCG
CACCCTCCACACAGTATCATGAAATCATCCATCTTCAGTGAGCCGGCCCG
TATCCCTCTAGCCACCCCTCAAGAGTTGATGAAAGAGTTACTTTTGAGTA
CGGCGCCAGGAGGCCGGTCTCATCGATTTACAGCGACTCCATCTTCAGCG
AAGTGGGATCCGAATGTTTCGAGAAAAGGCTTGAAGATACGACAGAAAAA
GATTTAGGTACGTCTTTAAAACGATTTAAGGGTGAAGGAAGTCTTAATGA
AATTAcgtttcttaaaaaacattttattttagttttttcttgcttttgtt
ttcttctttctcttgtcattttAAGTCGATTCCTGAATTAAATTAATACA
GACCCAAACGGAAGCACTCCTTCGGgacaaaaaatcattattaaaTATTG
TAGGTGTTTCGGATATATTTATGGTGTACAAAGTAATGTGTATACATAAT
GTGTAGATAACGAGTCCTCTCATTTACCTACTTACAGAATTAGAGAAAGC
GATTACCGAGAACCCACCATCCAGCCACCCAAACCACGTCCAACAACAAT
GGATGAAAGAACTCTTATTCATGACTGCCGACAACACCAACATTGAAGCT
ACTGAATCGGTAATGAGTGAAATTGGTTCCATCTCTTTTGACCGGAGATT
AGACTCTCATTCCATAGCTCACACGCCGCGCGCCATGACGCCAGTACATC
AAACGGAGGACGAAGATGGTGAACCGGTGAGAACGAAACGTATGCGTTTT
CAGGTATGAAACGTTTTGGTTTACCTTTATAGCACATTGCTATTTTCGTC
TCGGTCGGAAAGTtaaagattttgatattttgttgcaggggggggggcaa
gcagttaaTACATAACACTATGTGTATTAActgctttttgaaatttttcc
aaagGACCACCACCCCTTGACACTTAGTACACTGTGTATTAACTGTTTTT
GACCCATTAAATATATACACCAGCCCCAAAGTGCTTCTGCAGCAGCTGAC
AAAAGGTGTACGAATCCGATTTTTGCCCTGCTTAAtcattgatatatttt
tttaatttcaaggaaCCCTTTGAAGAATCCTTCAATATGCTTTCCGAACA
TCGTCATTGGTGTCCCTGGACCAATATATTATTGGCCTCCCCGACTCACG
ATGACGTCCATGCGCCAGCTCAATCAGATAACGTTTCTTCAACCACTAGC
GGTTTCGAACGTACACCGAGGAATATTTTCGGTTCTCGAACACAGGCGTT
ACCGGGTTGGAAGATCGTGTTGATGACTATTTTTCCGGCGCTTGGTCGAG
ATGTGAGCAGTCCAGTGGTAAactcttgaaaattttgataaaacataTCA
TGTATGAAATTATAGCCTCCGTATGTGGTTATATTTCTATCGAATTGCTT
TTTGATTTACCTAATTCTTGTAAGGCAATGCTCGATGGCTAAAAAAGCAT
GTTCAAATAGTGTAATTATTAAGATAGTCTACATATAAGGGACTTTAATC
ATATAACTGTACCGTAAGCTTGACAATAGTAGAAATTTGATGATGTATAC
ATCATTATTTCATATTGGTCAAAATGTTTATGTTATACTTCTGTTTAAAA
GAATACTCTTAGGTggcaaataaacggggggggttcgATTAAacggaggg
ggttggaaaattttcgaaattttaataaacggggggggcctaattgccgc
ggggcgtttatttggcacctaagagtacgtcATGAgtatcatttttagaa
atatttcaatgTCTACCGATTGTCTCTAAATTGTGTTTGTTTTATACAGT
CACCTCCACCACCAAACGAAGCTTGGAAATCAGTTCGTACACTTCTCGGT
GATTGTGTATCTCCTTATAAACCAGCTGCTACATCATCTACCACTTCTAG
TGCACCATCTTCATTGAACACATAGAAatgcaacaacaacaaaaaatatt
ccGTTCAAATTCAATTATCAAGGTCTACACAGTGGCTTTCGTTGAATTTT
ATAACTATGGAAGCTCAATACGAAGTCTCAGCATTTTCATACTCTTCAGT
TACTTTTTACAATGTGAAAGAAGGCAACCAATGTCAAAATATGAGGTGGA
CTGAGGAGTTTTATTATAGATTTTCCGTGTACATACCGTCCGTACATACA
CAAACCGTAGGCGAAGGTGAAAAATTAAGCATCGATATATTATCAAAATA
TCTCGTACGTAAGATGATATCGTATAAATAATATTCCGCGGCTGTTGGAA
ATTAACCAAACCTACGATTCCATACCTAATTGAAGACTCGACAAATTACT
TTTGATTCAACACATGCGTGCTTGTGATACCAAAAGAGAAAATCCTTCTA
CCTCCTAGACTTGTTATCACTCCAACGTATTCGAGATGAATGAGATGGAG
CATCTTGATTAAAATTAATCGCTAGTAGTATCCGGATAAAAAGAATCGTG
AATTTTTACCGATCTTGTCTGTAGAATGCGGTGTTTtgctatgttttttt
ttttaataaccaTGTATAGCTGTAGGGAAAACGGATTCGAAGACCAATAA
TTTCCATCCGTATTcacgatattcatgacgtaatttctTATACGAAAGCA
CTCAAAATAGGCCGGGcttttgccactagttttattgtttaaattcaaaa
tgagtGGCAAACCCCTGGTCTATTttgtgcttccgtataaaacaatTATG
GACATCACGAATCGTTTCGTATTTTTCATTCGACATGTACATACATTGAC
TAAATACAGCTAGAAGCCGACTCGCGTCAAATGTTTGTATCTACAAGCGT
GCCGTAGCAACAACTCTAGTAAAACTCGAACCTCGTCCCATTTATCGTGT
CTTTAGCACAACGGATGGTAAGTGTTTTGAGAAACCGAAATCATAGTTGA
GTGCCTAATATTTACAGAATTATAACTTCACAACTCCTAATTCTTCTCTA
CGCCAAAAGTGCTCAATGAAAGCTCAGAACTTAAGAAAACGTTAAGAAAA
AGGCATATATTATTTACGgaacttaaagtttcatgccGTCCCTATGAACG
ACGATTACCAGCTaaatctataacttttcaattGAGAAATCTTATTTATA
CCATTGAAAGTATGGAAGGCAGAAATTAGCATTTTTTGCCCCTCTTATTG
TTTAGAAGGAACCCGAGGGTAGCCAGCGTGAAACCTTTTGGAAAAGCGCC
CCTATCAATCCCATAGCACTACTACTTTAactgcttttttcattttcgtt
tagtatgttttgaatttgtctgtacacagacccagtatctacggctattt
tcaaaattaattgccGTAgaggtctgttgtcattgtctcatttaagattt
ttcaagCCGATCGCTGCAATGGAATGTTaatgagagaggggagacgatga
gagaagtgttgctattttcaaatcatacttcatcgcagaggtctccgtac
gtgaattttttcatcaaacagacaatgtgtACAGAgcgtactacgaagcg
ataaacgtgagatacactctggtacagagtaatttTACATCCcttcttgt
tttcattttccaaacagttGGGAGAGTTGGGAGGCACTTGAGAGAGTAAA
TCCAAATTATATTGATCTTCAAAATTTAGTGCCCGATATataatttaatg
tttttgatttaGAATTATGTTTTAGAAAATGATGATGATATCTTTTAGAA
ATTATtatagaaaatttgatttttgattcgcTCGCTCTCACGATTATAAA
AAGTTTAAACTGATTAtttttttAACCTCAAGAAAAATAATAGTCAATat
tgtaatttatttttaatgacaaAAGAACCATTTCAAACTCCTTGtgttgt
ga

Coding sequence (CDS) from alignment at sc0000084_pilon:7669..15170+

>MSTRG.11528.2.p2 ID=MSTRG.11528.2.p2|Name=MSTRG.11528.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000084_pilon:7669..15170+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGAACTCTTATTCATGACTGCCGACAACACCAACATTGAAGCTAC
TGAATCGGTAATGAGTGAAATTGGTTCCATCTCTTTTGACCGGAGATTAG
ACTCTCATTCCATAGCTCACACGCCGCGCGCCATGACGCCAGTACATCAA
ACGGAGGACGAAGATGGTGAACCGGTGAGAACGAAACGTATGCGTTTTCA
GgaaCCCTTTGAAGAATCCTTCAATATGCTTTCCGAACATCGTCATTGGT
GTCCCTGGACCAATATATTATTGGCCTCCCCGACTCACGATGACGTCCAT
GCGCCAGCTCAATCAGATAACGTTTCTTCAACCACTAGCGGTTTCGAACG
TACACCGAGGAATATTTTCGGTTCTCGAACACAGGCGTTACCGGGTTGGA
AGATCGTGTTGATGACTATTTTTCCGGCGCTTGGTCGAGATGTGAGCAGT
CCAGTGGTAAactcttgaATGAAAGAACTCTTATTCATGACTGCCGACAA
CACCAACATTGAAGCTACTGAATCGGTAATGAGTGAAATTGGTTCCATCT
CTTTTGACCGGAGATTAGACTCTCATTCCATAGCTCACACGCCGCGCGCC
ATGACGCCAGTACATCAAACGGAGGACGAAGATGGTGAACCGGTGAGAAC
GAAACGTATGCGTTTTCAGgaaCCCTTTGAAGAATCCTTCAATATGCTTT
CCGAACATCGTCATTGGTGTCCCTGGACCAATATATTATTGGCCTCCCCG
ACTCACGATGACGTCCATGCGCCAGCTCAATCAGATAACGTTTCTTCAAC
CACTAGCGGTTTCGAACGTACACCGAGGAATATTTTCGGTTCTCGAACAC
AGGCGTTACCGGGTTGGAAGATCGTGTTGATGACTATTTTTCCGGCGCTT
GGTCGAGATGTGAGCAGTCCAGTGGTAAactcttga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11528MSTRG.11528Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11528.2.p2MSTRG.11528.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11528.2.p2.exon1MSTRG.11528.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon2MSTRG.11528.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon3MSTRG.11528.2.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon4MSTRG.11528.2.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon5MSTRG.11528.2.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon6MSTRG.11528.2.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon7MSTRG.11528.2.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.2.p2.exon8MSTRG.11528.2.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:7669..15170 +