MSTRG.11528.1.p2 (mRNA) -

Overview
NameMSTRG.11528.1.p2
Unique NameMSTRG.11528.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:7558..15170+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11528.1.p2 ID=MSTRG.11528.1.p2|Name=MSTRG.11528.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7613bp|location=Sequence derived from alignment at sc0000084_pilon:7558..15170+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGTATCTGTTCCTTTGTAGATTAGATTTCAGTATCATTTATAGAAACCC
Actttacctttacattgcttttttgcttaatactttaatctttttttatt
tatgtttttagtGAATCAAATGTCAGTTGTAACCCACAGAGTAAAGACTT
GTTTCTTGAAAGAGTTAAAACATTCACGGTATGGTAAAATTTTTCATTGT
AACCTTTTTAAATCTCTAGTTAAACTATTATTGAAAACAGTTTTGTCTAT
TTCAAATCAGTTTTATATTAAATATTGTTGAATTCCCTAAAACTTATTCA
CAAGAGCTGAGGTAATCCATTCTAATTCTGGCAGGAATTAAATTTGGGGG
GATTAGCAAAAAGGCAAAActccccaaaattttaaaattgtttttgttgt
aCTAGTAGTGAAAGTATTGGCCAAAAGTAGCCACCCTTTAGCCAACCAAC
GAATTAAGTTTCATtatatttgattaaaaaatgatagtaaaaaaaaaaaa
ctgtaaaaTAAAGTATATCATAATCGCTTTTCTCATAGACAACTAACTGG
GCAGCAAAACCAAATGAGTTATCACCCTTGAAATGTGCTCAATATGGTTG
GTGCAATGAAGAACTTGACCAGTTGAGATGTGTCACATGCAGTGCTACCA
TATTTGCTGGTATGCCTGATGATTGGGATTCCTCAGCTTGTAAGCTTATA
CtaaatgttttagatttttatagatttttggtaaaatcaaaCCTGAACCA
AGACAAGACAAGAGATCTAGATCCTCCAGTACTATGATTCTAAGACTTGA
TTTATTAtaatgttaaaaattcaaagtttaaaCTTCCAATACTTTCAGTG
TTCTGTATTTATTGGCTTTTGGGATTGTCAAGGACGCCTTCGGAATATTT
TTGGCATGAAAGAGCTGTGCCttttaattatttatgtatttgattatcaa
attttaattcataagtattttcttttttagattctGACATTTGTAATGAG
ATCAAAGACAAATTGAAAATTGGACATCAAAAGCTCTGTCCTTGGCCACA
GAACCCCTGCCCACCATCCTTTTTGAGTTTACCCTCACGCTCAGCACAAC
AATGGAAAATGGAGATTCGGTCAGCATTTTGTGGGTTGCTGGAGTTGAAA
GGAAATCTACCTGAGTTGAATGAAGATACTGTAGCATCAATGGTAAAATT
CTTAAATATTTTAGGTTACACTGTTATtttatataagcataacgtttaaa
TAAGCACTCAAATtcggtaaaaaataagcataatgctaaaGCGTACcctc
caagctgaaatgcaaatAGAATTCTTGCTGCTTTTCTAAGACGCTGACTT
TTTTAGGGTTACTTTTGAAGCTGTTTGAGCTTTTTAAGACCAAAGATTTT
CACCTGCTGCTCCAAATTACAAAGATAACTTTCATTCTTTGAGCTGAATC
AATGTGCGacttaaaagttcaaaattttcatgaacccaaagaaaattcac
gatttgaagtctaagcatataaataagcataaattcaggctgaaaatgag
attttgctaagcatattggGCCTCGACCGAATTTTCCAGTATGCTTaaaa
aaaaGAGTATTACCATCATAGGTCCaatagtggggtcgtttagcataatt
tacaggaaaacaataagataattcacgcagaagatgctatttatggtcaa
ttttgaccaaagtgtggcgaaaagtggaacttgcgaatgaaatatctcga
gttaggtaaggaaatcagctataaccgtttcaaagtcttctatatagttt
ttcgagagctttcgaattatatacatgatattgtctgagaataagtttga
aattttcaaaaaaatttcgcccttaggatttgccttgggaaaatagaaat
gtcccaaaaaagggatgttccaccagtgggattttaggggaatttttcct
gaggtataagcatcctatagagaaggtctggagaaagtttcagctagatc
ttatttttttcctacaaacaacctgtatttttgtaacacgaccacactac
aaTGGTAAAGTCTTTCACCAGCTTtgcaaaaaaatagttttggcTCTTAT
AATCAACCTCTTCTAAGaggttttcattttaaaaaatcacctgTTTTGCA
ATGATCCCGCTGTGAGAGATAGAAAGAATCCAATTGGGCAACGATGGGAG
AGTATCATAGGGTCGATGAAtccatagaccttttcataaattacgtcaca
aacatcacttgacTCGTATTCAAACGATTACCATGGCGGTTATGTCTCTt
aagacattaaatgattttttacgaatagaaagtagttttgataaaatccg
aTGAGAGTTGATCACCAtggaaataaattcaaaacgaggcaattGTTGTT
TGTGACGTAGTTTATGCAAAGGTCTATTGACATTCTAATTTGAGGGGAAC
TAGCTGTGGTCAATTGACCTGAAATTGGAATTCAAGCCTGGTCACACTCC
ATTAATAACAACAATAGAATATGCTATTGTTACTGGAGCATAATCAGGCT
TTAACTCCaattatttgtttatttgaaaattgggTTTAATGTTTAGGAAA
TATTACATTCCtttttttCTCTTAGAAAAGTCTGGATAACAGTTGCATCG
AGAAGCTTTTGACAAACGTTTTTCGCCATTCTTGTGATACAGATGATGAA
GTGTTACAGGCTAAAGTTGCATGCATATTGGCTGTCACAGGCTGGAATGC
AAGGTGAGAATTTCTAAATCTAATTTTACATCATGGGCTGTTCCATTGAA
TTTCCATACAGGGAgctttttaagtcagaaaaagatttttagaaatgtgc
TTGGTGCCCcctgaaaaatttgcaaaagagcccttggaaaaattctttcc
aTACCTTAAATAAAGTCAGTGTTTTGCTCACTGGAAAtataataactttt
taccccctggaaaatgaaaaaatactcctttagaccccctggaaattctt
cacggaaatgttcgtccaccctctgtatggatataaaattgaATGGCCCA
TCAGTGAGGTTAAGCATCGATAGACAAATCACAACGACAGATGAATTCGC
GCCACGGCACTTTTCTGCAGGCTAATCAGAAAGCAAGGTAAATTTACCTG
CACAAATATATAAACTTTGCTTCTAAGACGAATTTCTGACTGtttttttG
TTCTAGAAGCAAAGCTGAAATACTATGATGATTGACTTTCCGAGATGAAG
AAAAGTCTTTGTCAATAACTCTCCCTAATTTAAGTCAACCCATTGATAAT
CAGACCCTATACGCTTAATTTGCCAAGAACCCTTCACATggtttttgtat
aatttatttttaaatttaagtCAACCCATTGTTGAAGACCCATCTATCAC
GTGTTCATTATGTGGCAAAGAATCAGGTTTATGGCATTACAAGTCGCTCT
CCAGTCGCCGGAATGCCAAACAGCAAAAACTACATTTCGAATCCGCGACC
TCACAACAATCATTATCTGAAGATTTTATGTCATCAAGAGTATCAGTCAA
ATCTGAGAACAGTACACATTCGGGAAGTGTCACACACGAGCTCTCAAAAC
TGGCAACTAGTAGCGACTCTTTAGCCCATTCAGACCTTTTGAAGCCAGCA
GGATCTCAAGAATCGTTAGTCAATCTTAGGGTATCGGACAGTAAACACAT
GAGTATAGATCATGATCATGATGATGCAGACTCGATGGGAGGAGGACACT
ATCATAGCTCGCACCCTCCACACAGTATCATGAAATCATCCATCTTCAGT
GAGCCGGCCCGTATCCCTCTAGCCACCCCTCAAGAGTTGATGAAAGAGTT
ACTTTTGAGTACGGCGCCAGGAGGCCGGTCTCATCGATTTACAGCGACTC
CATCTTCAGCGAAGTGGGATCCGAATGTTTCGAGAAAAGGCTTGAAGATA
CGACAGAAAAAGATTTAGGTACGTCTTTAAAACGATTTAAGGGTGAAGGA
AGTCTTAATGAAATTAcgtttcttaaaaaacattttattttagttttttc
ttgcttttgttttcttctttctcttgtcattttAAGTCGATTCCTGAATT
AAATTAATACAGACCCAAACGGAAGCACTCCTTCGGgacaaaaaatcatt
attaaaTATTGTAGGTGTTTCGGATATATTTATGGTGTACAAAGTAATGT
GTATACATAATGTGTAGATAACGAGTCCTCTCATTTACCTACTTACAGAA
TTAGAGAAAGCGATTACCGAGAACCCACCATCCAGCCACCCAAACCACGT
CCAACAACAATGGATGAAAGAACTCTTATTCATGACTGCCGACAACACCA
ACATTGAAGCTACTGAATCGGTAATGAGTGAAATTGGTTCCATCTCTTTT
GACCGGAGATTAGACTCTCATTCCATAGCTCACACGCCGCGCGCCATGAC
GCCAGTACATCAAACGGAGGACGAAGATGGTGAACCGGTGAGAACGAAAC
GTATGCGTTTTCAGGTATGAAACGTTTTGGTTTACCTTTATAGCACATTG
CTATTTTCGTCTCGGTCGGAAAGTtaaagattttgatattttgttgcagg
ggggggggcaagcagttaaTACATAACACTATGTGTATTAActgcttttt
gaaatttttccaaagGACCACCACCCCTTGACACTTAGTACACTGTGTAT
TAACTGTTTTTGACCCATTAAATATATACACCAGCCCCAAAGTGCTTCTG
CAGCAGCTGACAAAAGGTGTACGAATCCGATTTTTGCCCTGCTTAAtcat
tgatatatttttttaatttcaaggaaCCCTTTGAAGAATCCTTCAATATG
CTTTCCGAACATCGTCATTGGTGTCCCTGGACCAATATATTATTGGCCTC
CCCGACTCACGATGACGTCCATGCGCCAGCTCAATCAGATAACGTTTCTT
CAACCACTAGCGGTTTCGAACGTACACCGAGGAATATTTTCGGTTCTCGA
ACACAGGCGTTACCGGGTTGGAAGATCGTGTTGATGACTATTTTTCCGGC
GCTTGGTCGAGATGTGAGCAGTCCAGTGGTAAactcttgaaaattttgat
aaaacataTCATGTATGAAATTATAGCCTCCGTATGTGGTTATATTTCTA
TCGAATTGCTTTTTGATTTACCTAATTCTTGTAAGGCAATGCTCGATGGC
TAAAAAAGCATGTTCAAATAGTGTAATTATTAAGATAGTCTACATATAAG
GGACTTTAATCATATAACTGTACCGTAAGCTTGACAATAGTAGAAATTTG
ATGATGTATACATCATTATTTCATATTGGTCAAAATGTTTATGTTATACT
TCTGTTTAAAAGAATACTCTTAGGTggcaaataaacggggggggttcgAT
TAAacggagggggttggaaaattttcgaaattttaataaacggggggggc
ctaattgccgcggggcgtttatttggcacctaagagtacgtcATGAgtat
catttttagaaatatttcaatgTCTACCGATTGTCTCTAAATTGTGTTTG
TTTTATACAGTCACCTCCACCACCAAACGAAGCTTGGAAATCAGTTCGTA
CACTTCTCGGTGATTGTGTATCTCCTTATAAACCAGCTGCTACATCATCT
ACCACTTCTAGTGCACCATCTTCATTGAACACATAGAAatgcaacaacaa
caaaaaatattccGTTCAAATTCAATTATCAAGGTCTACACAGTGGCTTT
CGTTGAATTTTATAACTATGGAAGCTCAATACGAAGTCTCAGCATTTTCA
TACTCTTCAGTTACTTTTTACAATGTGAAAGAAGGCAACCAATGTCAAAA
TATGAGGTGGACTGAGGAGTTTTATTATAGATTTTCCGTGTACATACCGT
CCGTACATACACAAACCGTAGGCGAAGGTGAAAAATTAAGCATCGATATA
TTATCAAAATATCTCGTACGTAAGATGATATCGTATAAATAATATTCCGC
GGCTGTTGGAAATTAACCAAACCTACGATTCCATACCTAATTGAAGACTC
GACAAATTACTTTTGATTCAACACATGCGTGCTTGTGATACCAAAAGAGA
AAATCCTTCTACCTCCTAGACTTGTTATCACTCCAACGTATTCGAGATGA
ATGAGATGGAGCATCTTGATTAAAATTAATCGCTAGTAGTATCCGGATAA
AAAGAATCGTGAATTTTTACCGATCTTGTCTGTAGAATGCGGTGTTTtgc
tatgtttttttttttaataaccaTGTATAGCTGTAGGGAAAACGGATTCG
AAGACCAATAATTTCCATCCGTATTcacgatattcatgacgtaatttctT
ATACGAAAGCACTCAAAATAGGCCGGGcttttgccactagttttattgtt
taaattcaaaatgagtGGCAAACCCCTGGTCTATTttgtgcttccgtata
aaacaatTATGGACATCACGAATCGTTTCGTATTTTTCATTCGACATGTA
CATACATTGACTAAATACAGCTAGAAGCCGACTCGCGTCAAATGTTTGTA
TCTACAAGCGTGCCGTAGCAACAACTCTAGTAAAACTCGAACCTCGTCCC
ATTTATCGTGTCTTTAGCACAACGGATGGTAAGTGTTTTGAGAAACCGAA
ATCATAGTTGAGTGCCTAATATTTACAGAATTATAACTTCACAACTCCTA
ATTCTTCTCTACGCCAAAAGTGCTCAATGAAAGCTCAGAACTTAAGAAAA
CGTTAAGAAAAAGGCATATATTATTTACGgaacttaaagtttcatgccGT
CCCTATGAACGACGATTACCAGCTaaatctataacttttcaattGAGAAA
TCTTATTTATACCATTGAAAGTATGGAAGGCAGAAATTAGCATTTTTTGC
CCCTCTTATTGTTTAGAAGGAACCCGAGGGTAGCCAGCGTGAAACCTTTT
GGAAAAGCGCCCCTATCAATCCCATAGCACTACTACTTTAactgcttttt
tcattttcgtttagtatgttttgaatttgtctgtacacagacccagtatc
tacggctattttcaaaattaattgccGTAgaggtctgttgtcattgtctc
atttaagatttttcaagCCGATCGCTGCAATGGAATGTTaatgagagagg
ggagacgatgagagaagtgttgctattttcaaatcatacttcatcgcaga
ggtctccgtacgtgaattttttcatcaaacagacaatgtgtACAGAgcgt
actacgaagcgataaacgtgagatacactctggtacagagtaatttTACA
TCCcttcttgttttcattttccaaacagttGGGAGAGTTGGGAGGCACTT
GAGAGAGTAAATCCAAATTATATTGATCTTCAAAATTTAGTGCCCGATAT
ataatttaatgtttttgatttaGAATTATGTTTTAGAAAATGATGATGAT
ATCTTTTAGAAATTATtatagaaaatttgatttttgattcgcTCGCTCTC
ACGATTATAAAAAGTTTAAACTGATTAtttttttAACCTCAAGAAAAATA
ATAGTCAATattgtaatttatttttaatgacaaAAGAACCATTTCAAACT
CCTTGtgttgtga

Coding sequence (CDS) from alignment at sc0000084_pilon:7558..15170+

>MSTRG.11528.1.p2 ID=MSTRG.11528.1.p2|Name=MSTRG.11528.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000084_pilon:7558..15170+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGAACTCTTATTCATGACTGCCGACAACACCAACATTGAAGCTAC
TGAATCGGTAATGAGTGAAATTGGTTCCATCTCTTTTGACCGGAGATTAG
ACTCTCATTCCATAGCTCACACGCCGCGCGCCATGACGCCAGTACATCAA
ACGGAGGACGAAGATGGTGAACCGGTGAGAACGAAACGTATGCGTTTTCA
GgaaCCCTTTGAAGAATCCTTCAATATGCTTTCCGAACATCGTCATTGGT
GTCCCTGGACCAATATATTATTGGCCTCCCCGACTCACGATGACGTCCAT
GCGCCAGCTCAATCAGATAACGTTTCTTCAACCACTAGCGGTTTCGAACG
TACACCGAGGAATATTTTCGGTTCTCGAACACAGGCGTTACCGGGTTGGA
AGATCGTGTTGATGACTATTTTTCCGGCGCTTGGTCGAGATGTGAGCAGT
CCAGTGTCACCTCCACCACCAAACGAAGCTTGGAAATCAGTTCGTACACT
TCTCGGTGATTGTGTATCTCCTTATAAACCAGCTGCTACATCATCTACCA
CTTCTAGTGCACCATCTTCATTGAACACATAGATGAAAGAACTCTTATTC
ATGACTGCCGACAACACCAACATTGAAGCTACTGAATCGGTAATGAGTGA
AATTGGTTCCATCTCTTTTGACCGGAGATTAGACTCTCATTCCATAGCTC
ACACGCCGCGCGCCATGACGCCAGTACATCAAACGGAGGACGAAGATGGT
GAACCGGTGAGAACGAAACGTATGCGTTTTCAGgaaCCCTTTGAAGAATC
CTTCAATATGCTTTCCGAACATCGTCATTGGTGTCCCTGGACCAATATAT
TATTGGCCTCCCCGACTCACGATGACGTCCATGCGCCAGCTCAATCAGAT
AACGTTTCTTCAACCACTAGCGGTTTCGAACGTACACCGAGGAATATTTT
CGGTTCTCGAACACAGGCGTTACCGGGTTGGAAGATCGTGTTGATGACTA
TTTTTCCGGCGCTTGGTCGAGATGTGAGCAGTCCAGTGTCACCTCCACCA
CCAAACGAAGCTTGGAAATCAGTTCGTACACTTCTCGGTGATTGTGTATC
TCCTTATAAACCAGCTGCTACATCATCTACCACTTCTAGTGCACCATCTT
CATTGAACACATAGATGAAAGAACTCTTATTCATGACTGCCGACAACACC
AACATTGAAGCTACTGAATCGGTAATGAGTGAAATTGGTTCCATCTCTTT
TGACCGGAGATTAGACTCTCATTCCATAGCTCACACGCCGCGCGCCATGA
CGCCAGTACATCAAACGGAGGACGAAGATGGTGAACCGGTGAGAACGAAA
CGTATGCGTTTTCAGgaaCCCTTTGAAGAATCCTTCAATATGCTTTCCGA
ACATCGTCATTGGTGTCCCTGGACCAATATATTATTGGCCTCCCCGACTC
ACGATGACGTCCATGCGCCAGCTCAATCAGATAACGTTTCTTCAACCACT
AGCGGTTTCGAACGTACACCGAGGAATATTTTCGGTTCTCGAACACAGGC
GTTACCGGGTTGGAAGATCGTGTTGATGACTATTTTTCCGGCGCTTGGTC
GAGATGTGAGCAGTCCAGTGTCACCTCCACCACCAAACGAAGCTTGGAAA
TCAGTTCGTACACTTCTCGGTGATTGTGTATCTCCTTATAAACCAGCTGC
TACATCATCTACCACTTCTAGTGCACCATCTTCATTGAACACATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11528MSTRG.11528Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11528.1.p2MSTRG.11528.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11528.1.p2.exon1MSTRG.11528.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon2MSTRG.11528.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon3MSTRG.11528.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon4MSTRG.11528.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon5MSTRG.11528.1.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon6MSTRG.11528.1.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon7MSTRG.11528.1.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11528.1.p2.exon8MSTRG.11528.1.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:7558..15170 +