MSTRG.11495.1.p1 (mRNA) -

Overview
NameMSTRG.11495.1.p1
Unique NameMSTRG.11495.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:1024307..1028310-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11495.1.p1 ID=MSTRG.11495.1.p1|Name=MSTRG.11495.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4004bp|location=Sequence derived from alignment at sc0000083_pilon:1024307..1028310- (Clytia hemisphaerica_ch_hm2_pilon)
AATTTTTGACCTTCCGAAGAAGGAAGAAGGTATAGAAGAATTTTTATTTA
TCATCCTTAATCACATTGAGCTTGTTGAGGGCGTTGCGTCAAAATGCACG
CCTTAACAGAGTCAGTATGGGAAGTAATAACTTGGAAATCAAAAACACCT
TACGATGCCGCCAGTGATCAATACACTCGTATATTCATGCCAAAACTTTT
CATCATCTCATCACTCGTAATGGGTTTCAGTTATTTCAACGATAAACTCA
ACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAAGAG
ACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAATGCATACCAGACT
CAACGAATCTTCGTATTACGGGATACCTGAATACAATGGTTATGATGGTG
TAACAAAAGCAGGTAGACTACAATATTTCTTTCCTCCTCAGTTCTTGTGA
ATTTTTATCAAACAACCCTCGAAACCTTCTTCAACAACGTCCCAGGTGGG
AAATTGGTTAATCTTGCTGGATTCATCACCACCTGGGGAAGTCGCAATAA
ATCTTTAAACTGCAAACTTACTAGCATTTGAATTGCAAAATCTTAAAACA
CCCCCTTCTCACAGACCGACTGGGAATCCTTCCCACTGGAAAAATTGGCC
AAAATATCGTCCACGGTGGAAAATTATCTTCAAATTATAATCAAATTAGC
CAAATTTTTCCATCCCATTGAATTTTGAGAACAAAAGAATTGAAATCCCC
ATTCATAAAAGATATGTGAATATTAATGCCCATCGAGTTTTAGTCCGTTA
TTTTTTACCCAGTGGGGGCTGAAAAAATCCTACCGGGTCTGTGAGAAGGG
GGTATCTTAAAACAAGAATTCCGATTCCAATTAGATAGATATTCTTCACT
GGGTTTGTGAGACAGGGATGTTCCCTCCAAACAAGTCTAAATTCACCACT
AAAACTGATTTCTTTCTTCTACAGGTCAGCTCTGTTCAATGCTCGACCGT
GCTGGTGGTAAGAATATAGCATGTAATGAGATGACGAAACGATACTTCCT
TCATTACCAATGGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCTACT
TCTTCCCTTACCTTATTTTCCGTGCTGGGAACAGTGATATTATCTCATTG
GTGGATCTAGTGCTCACTGGTAACATGAAAGATGTTGACAAACTTGTCAA
TAATTACTTCAATTATAAAATCAACTCTAAACTTAAGATGAGGATTATCA
TATGGTTCAATTTGGTCCTGAAGGTAAAAGACTTTCTAAAGTGTTTTCAA
AATCTCATAACTCTAGCAAGAAGCAGTCTATTAGTATATTATGACCAACC
CCCGGGGGAGATACTTAGGAGAAATTGGGACCAGGGACGTGCCACTGGCC
AGGGTCCCTTTTCTAGGCTCTGAAAATATCTGATAGGGTCCCAAATTTAC
TAATTTTCAACATTTGTACCTGACAGGGTCGTCTTTTGGTTATTTTGGAC
AATTTTCAGGGTGGAAATTAGAAAAATTTTCAATCTTTTGTCTATATTTC
GTCATTTTTGCCACTTTTCAGGATGAAATGGGAAATCTTTTTCGATTTTC
CTTCCGACAGGGTCCCAAATTTGCCAAACATTCGTATCTGACAGGGTCCA
CTTTTCAAACTCCAGTGGCACGTCCCAGTTGGCCGTCAAGGTCCAACCTT
TAAACTAGGATAAATCTTTCTTCATTTTGTCGGCCTGTAGAGTGGAATAA
ATTGGCATAATAAGAGTTTATAGTAATGCTATTTCTTCGCTTTTGAATAT
GTACAGAAATGTCCAAATCATATAGTGTCTTTCAGTTTCCAGATCCCTGC
TACTTTACATTTTTTTATTATAAAACACCCGTCTCACATCCCCGGTGTGG
ATAAAAATTCTATTGTTTTGTTCCCGAGCTTAAAATATCCATTGGGGATG
ATTTTGGACGGCAAATTGTTGTATTGAATTTCGAATGGGGATGAAATCAA
AATCAATTTCCCAGTGGGGCTGAAATCATGGGGTATATTGTCCACTGGAG
ACGAAATTTTGGCCAAATCTTTCAGTGTTGCTGGGGTCCCAGCGGGTCTG
TAGCACAGGGGTGCCATAAACAAGTGAGAAAAAACCGGTCATTATTGTAT
TTGTTAACCGTTTCCGTCAGCTTCGATTGATTTTTAGCGCTTTATCCAGG
AATTTCTGACGTCAGAAATAAAAATTGAGAGAAATGATATCAACGCATTT
TTTTTTTTTTTTTTTTCATTTGTTCCTGGATTTTAAACCATTGCATTTTT
TTAATAAGTCACAAATTTATTTGGATATACATATAATAGAAATCAAATAT
ATTTTAAGATGAAAAATCTGAAAAACAGTGAGCAATGACCAAGAGGATAT
CAACGCATTGTTCATTTTCCTTTGAAAAAGTGACGTCAAAATGAATTTTC
CTAACGACGGGCAACTCTGGGAAGTGTAGGCCCGTCGTCATGCAAAAAGA
ACCAATTGCATTGCAAGAAAAGCTGTGTAGCCCGCTTTGAAAAAGTAACC
GGCTAACAATCAATAATACTATTAGTCTTTTTCCTAGGATTTGTGCATCT
TTTTTTACACGTTATTATCTAAAAAAATATATACTAAAATGCAAATCCCT
ATAAAATAGACTAAAACTGGAACAAATTTGCTTCCCTAAGGATATTTGAC
ATATGAAGGCTCAGTACCAATTCTTTTTTACTTTACTCATTTTCAGTTTC
TTTACATCGGTATCAACTTTGCTGGCTTCTTTCTGACCGATTTCACAATG
GATAGCCTTTTCATCGACTACGGTGCCGCTTGGTGGGAATGGAATAAAGT
ACCTAACTCTATTGCGCATGACATTGTGAAGACTGGTATACCAAAGCCTG
GAGATCGGTTTTTACCTTCTGTTGGTATATGTGAAGTACACGAAGCTTTG
AATGATAAACGTGGAGTTTATATTGATAAGTGAGTAGTCTAGCTGGATCG
CTTGAGAAAAACTGTAAAAAATGTTTTTAAAAATGTGTGTAATTAGATCG
GTTTCAAAATATTTCTTCCCCATCTTAATTGAACCTCATTCATTAGCATA
GGCATCAGCTTTACAGTGTTTTCTGATAGCACCAGATGATACGTTGATAC
CAATCTTACATCTCATTGGTAGTGTAAATAAAGCCTTGGATACACAGTGA
TGAGGTTGTTGCTGAGGAAATGATTTTAGCATTTTAACCTGCCAAAATCT
TGTTTCCTTTTTCAACACAGCTACGCTACTTTATTCTCATTTCTAGTCTT
TCGTAGAAAAGCACGGACCTTACGAGATCGCTTAATTTAGTATCATTTGC
CTTTACGCATATCTTTAGCTTTGGCTTTGCGTGCAGAAAACAACGACGAC
CTGATTTCATGTCACCTCAGGTTGTCTTAGCTCTGTTTTTCTTCAAGTGT
ATTTTCAATCTTGTATTTCAGACATAAAGTAATTTGCGAAGTCAGTCAAA
ACATTCGATACCAATACATTTTCATTATCCTCTGGTTCTTCTTTGCAACT
GGTGTTCTCATTTCAACCCTGGGGCTATTCCACTTAATTTACTCCACCCT
CAAAGCAATGTTTGTAGTGTACAATCCGACATGCTATGAAGAAGAACTAC
GTGAGAGAATCAGTGAACAGCTCACATTACGAGAAATTGAATACCTTGAG
AAGATCCGTCTGATGGACATGACAATGTATGGTGAAGTTATACGTGAATT
GTATCGTTACAAACCTGGTCTTCAAACCATCAAAAGATTCAATGAATCAG
CAACTTCAGATTCTGTCAGTTTGATGCCATCTGCGCCGAATACGGCACGC
ACTTCCCGCACCACATTATATGACTCAAGAGAAGAATTTCTTTCAGATTG
AATACTAATGTTTTGTGGACTAACAACAATTTAAAACATAATTGTTTTTT
GGAATATTATTGACCTTGTTTCAGTTTTTACTTATCATCGTAGTATTATA
TTAA

Coding sequence (CDS) from alignment at sc0000083_pilon:1024307..1028310-

>MSTRG.11495.1.p1 ID=MSTRG.11495.1.p1|Name=MSTRG.11495.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5124bp|location=Sequence derived from alignment at sc0000083_pilon:1024307..1028310- (Clytia hemisphaerica_ch_hm2_pilon)
ACATAAAGTAATTTGCGAAGTCAGTCAAAACATTCGATACCAATACATTT
TCATTATCCTCTGGTTCTTCTTTGCAACTGGTGTTCTCATTTCAACCCTG
GGGCTATTCCACTTAATTTACTCCACCCTCAAAGCAATGTTTGTAGTGTA
CAATCCGACATGCTATGAAGAAGAACTACGTGAGAGAATCAGTGAACAGC
TCACATTACGAGAAATTGAATACCTTGAGAAGATCCGTCTGATGGACATG
ACAATGTATGGTGAAGTTATACGTGAATTGTATCGTTACAAACCTGGTCT
TCAAACCATCAAAAGATTCAATGAATCAGCAACTTCAGATTCTGTCAGTT
TGATGCCATCTGCGCCGAATACGGCACGCACTTCCCGCACCACATTATAT
GACTCAAGAGAAGAATTTCTTTCAGATTGATTTCTTTACATCGGTATCAA
CTTTGCTGGCTTCTTTCTGACCGATTTCACAATGGATAGCCTTTTCATCG
ACTACGGTGCCGCTTGGTGGGAATGGAATAAAGTACCTAACTCTATTGCG
CATGACATTGTGAAGACTGGTATACCAAAGCCTGGAGATCGGTTTTTACC
TTCTGTTGGTATATGTGAAGTACACGAAGCTTTGAATGATAAACGTGGAG
TTTATATTGATAAGTCAGCTCTGTTCAATGCTCGACCGTGCTGGTGGTAA
GAATATAGCATGTAATGAGATGACGAAACGATACTTCCTTCATTACCAAT
GGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCTACTTCTTCCCTTAC
CTTATTTTCCGTGCTGGGAACAGTGATATTATCTCATTGGTGGATCTAGT
GCTCACTGGTAACATGAAAGATGTTGACAAACTTGTCAATAATTACTTCA
ATTATAAAATCAACTCTAAACTTAAGATGAGGATTATCATATGGTTCAAT
TTGGTCCTGAAGATGCACGCCTTAACAGAGTCAGTATGGGAAGTAATAAC
TTGGAAATCAAAAACACCTTACGATGCCGCCAGTGATCAATACACTCGTA
TATTCATGCCAAAACTTTTCATCATCTCATCACTCGTAATGGGTTTCAGT
TATTTCAACGATAAACTCAACTGCATGGTTTCTGCACGATTACACGAACT
TAAGGAGTTTGTACAAGAGACCTGTTGGATTCAAGGATTTTACATCTACC
AAGAAATGCATACCAGACTCAACGAATCTTCGTATTACGGGATACCTGAA
TACAATGGTTATGATGGTGTAACAAAAGCAGACATAAAGTAATTTGCGAA
GTCAGTCAAAACATTCGATACCAATACATTTTCATTATCCTCTGGTTCTT
CTTTGCAACTGGTGTTCTCATTTCAACCCTGGGGCTATTCCACTTAATTT
ACTCCACCCTCAAAGCAATGTTTGTAGTGTACAATCCGACATGCTATGAA
GAAGAACTACGTGAGAGAATCAGTGAACAGCTCACATTACGAGAAATTGA
ATACCTTGAGAAGATCCGTCTGATGGACATGACAATGTATGGTGAAGTTA
TACGTGAATTGTATCGTTACAAACCTGGTCTTCAAACCATCAAAAGATTC
AATGAATCAGCAACTTCAGATTCTGTCAGTTTGATGCCATCTGCGCCGAA
TACGGCACGCACTTCCCGCACCACATTATATGACTCAAGAGAAGAATTTC
TTTCAGATTGATTTCTTTACATCGGTATCAACTTTGCTGGCTTCTTTCTG
ACCGATTTCACAATGGATAGCCTTTTCATCGACTACGGTGCCGCTTGGTG
GGAATGGAATAAAGTACCTAACTCTATTGCGCATGACATTGTGAAGACTG
GTATACCAAAGCCTGGAGATCGGTTTTTACCTTCTGTTGGTATATGTGAA
GTACACGAAGCTTTGAATGATAAACGTGGAGTTTATATTGATAAGTCAGC
TCTGTTCAATGCTCGACCGTGCTGGTGGTAAGAATATAGCATGTAATGAG
ATGACGAAACGATACTTCCTTCATTACCAATGGCTACCTTTCTTTGTCTG
CAGTATGGCTATCCTCTACTTCTTCCCTTACCTTATTTTCCGTGCTGGGA
ACAGTGATATTATCTCATTGGTGGATCTAGTGCTCACTGGTAACATGAAA
GATGTTGACAAACTTGTCAATAATTACTTCAATTATAAAATCAACTCTAA
ACTTAAGATGAGGATTATCATATGGTTCAATTTGGTCCTGAAGATGCACG
CCTTAACAGAGTCAGTATGGGAAGTAATAACTTGGAAATCAAAAACACCT
TACGATGCCGCCAGTGATCAATACACTCGTATATTCATGCCAAAACTTTT
CATCATCTCATCACTCGTAATGGGTTTCAGTTATTTCAACGATAAACTCA
ACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAAGAG
ACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAATGCATACCAGACT
CAACGAATCTTCGTATTACGGGATACCTGAATACAATGGTTATGATGGTG
TAACAAAAGCAGACATAAAGTAATTTGCGAAGTCAGTCAAAACATTCGAT
ACCAATACATTTTCATTATCCTCTGGTTCTTCTTTGCAACTGGTGTTCTC
ATTTCAACCCTGGGGCTATTCCACTTAATTTACTCCACCCTCAAAGCAAT
GTTTGTAGTGTACAATCCGACATGCTATGAAGAAGAACTACGTGAGAGAA
TCAGTGAACAGCTCACATTACGAGAAATTGAATACCTTGAGAAGATCCGT
CTGATGGACATGACAATGTATGGTGAAGTTATACGTGAATTGTATCGTTA
CAAACCTGGTCTTCAAACCATCAAAAGATTCAATGAATCAGCAACTTCAG
ATTCTGTCAGTTTGATGCCATCTGCGCCGAATACGGCACGCACTTCCCGC
ACCACATTATATGACTCAAGAGAAGAATTTCTTTCAGATTGATTTCTTTA
CATCGGTATCAACTTTGCTGGCTTCTTTCTGACCGATTTCACAATGGATA
GCCTTTTCATCGACTACGGTGCCGCTTGGTGGGAATGGAATAAAGTACCT
AACTCTATTGCGCATGACATTGTGAAGACTGGTATACCAAAGCCTGGAGA
TCGGTTTTTACCTTCTGTTGGTATATGTGAAGTACACGAAGCTTTGAATG
ATAAACGTGGAGTTTATATTGATAAGTCAGCTCTGTTCAATGCTCGACCG
TGCTGGTGGTAAGAATATAGCATGTAATGAGATGACGAAACGATACTTCC
TTCATTACCAATGGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCTAC
TTCTTCCCTTACCTTATTTTCCGTGCTGGGAACAGTGATATTATCTCATT
GGTGGATCTAGTGCTCACTGGTAACATGAAAGATGTTGACAAACTTGTCA
ATAATTACTTCAATTATAAAATCAACTCTAAACTTAAGATGAGGATTATC
ATATGGTTCAATTTGGTCCTGAAGATGCACGCCTTAACAGAGTCAGTATG
GGAAGTAATAACTTGGAAATCAAAAACACCTTACGATGCCGCCAGTGATC
AATACACTCGTATATTCATGCCAAAACTTTTCATCATCTCATCACTCGTA
ATGGGTTTCAGTTATTTCAACGATAAACTCAACTGCATGGTTTCTGCACG
ATTACACGAACTTAAGGAGTTTGTACAAGAGACCTGTTGGATTCAAGGAT
TTTACATCTACCAAGAAATGCATACCAGACTCAACGAATCTTCGTATTAC
GGGATACCTGAATACAATGGTTATGATGGTGTAACAAAAGCAGACATAAA
GTAATTTGCGAAGTCAGTCAAAACATTCGATACCAATACATTTTCATTAT
CCTCTGGTTCTTCTTTGCAACTGGTGTTCTCATTTCAACCCTGGGGCTAT
TCCACTTAATTTACTCCACCCTCAAAGCAATGTTTGTAGTGTACAATCCG
ACATGCTATGAAGAAGAACTACGTGAGAGAATCAGTGAACAGCTCACATT
ACGAGAAATTGAATACCTTGAGAAGATCCGTCTGATGGACATGACAATGT
ATGGTGAAGTTATACGTGAATTGTATCGTTACAAACCTGGTCTTCAAACC
ATCAAAAGATTCAATGAATCAGCAACTTCAGATTCTGTCAGTTTGATGCC
ATCTGCGCCGAATACGGCACGCACTTCCCGCACCACATTATATGACTCAA
GAGAAGAATTTCTTTCAGATTGATTTCTTTACATCGGTATCAACTTTGCT
GGCTTCTTTCTGACCGATTTCACAATGGATAGCCTTTTCATCGACTACGG
TGCCGCTTGGTGGGAATGGAATAAAGTACCTAACTCTATTGCGCATGACA
TTGTGAAGACTGGTATACCAAAGCCTGGAGATCGGTTTTTACCTTCTGTT
GGTATATGTGAAGTACACGAAGCTTTGAATGATAAACGTGGAGTTTATAT
TGATAAGTCAGCTCTGTTCAATGCTCGACCGTGCTGGTGGTAAGAATATA
GCATGTAATGAGATGACGAAACGATACTTCCTTCATTACCAATGGCTACC
TTTCTTTGTCTGCAGTATGGCTATCCTCTACTTCTTCCCTTACCTTATTT
TCCGTGCTGGGAACAGTGATATTATCTCATTGGTGGATCTAGTGCTCACT
GGTAACATGAAAGATGTTGACAAACTTGTCAATAATTACTTCAATTATAA
AATCAACTCTAAACTTAAGATGAGGATTATCATATGGTTCAATTTGGTCC
TGAAGATGCACGCCTTAACAGAGTCAGTATGGGAAGTAATAACTTGGAAA
TCAAAAACACCTTACGATGCCGCCAGTGATCAATACACTCGTATATTCAT
GCCAAAACTTTTCATCATCTCATCACTCGTAATGGGTTTCAGTTATTTCA
ACGATAAACTCAACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAG
TTTGTACAAGAGACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAAT
GCATACCAGACTCAACGAATCTTCGTATTACGGGATACCTGAATACAATG
GTTATGATGGTGTAACAAAAGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11495MSTRG.11495Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11495.1.p1MSTRG.11495.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11495.1.p1.exon4MSTRG.11495.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11495.1.p1.exon3MSTRG.11495.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11495.1.p1.exon2MSTRG.11495.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11495.1.p1.exon1MSTRG.11495.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:1024307..1028310 -