MSTRG.11480.5.p1 (mRNA) -

Overview
NameMSTRG.11480.5.p1
Unique NameMSTRG.11480.5.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:727885..730067+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11480.5.p1 ID=MSTRG.11480.5.p1|Name=MSTRG.11480.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2183bp|location=Sequence derived from alignment at sc0000083_pilon:727885..730067+ (Clytia hemisphaerica_ch_hm2_pilon)
atttttcaaaacattataCGAAGTTGAGCATGAAGAGTTGGTTACATGTG
ACAACCTCATCACAAGGACAAGTTATTCTCGTTTGTGAACCTGCTGAAGA
TTTGTAAGTGTTTAGTTGAGATAGTTTATCAGAAGATCTCCTGAGGGTTT
TTCAACGTAAATACAACATGTGAAAATTGGTTATCCTGTATAGAAAACTA
AAAATCTTCATCATACTTTTCGGCCTCTTCTAGACAtagcaaaatctttt
ttttcatctttttgtttatttaattttgtaGAGCAATGAAATCGAATTGT
CGATATTCCTTCGATACTGGCACGACTTGGAAAGGTAATGATACTTTTTT
ATAATTGCCTTCTCCTAATGTGTAAACCATTTCTATCCGAATACTATGTC
ATATTAATTGGTGTGCCCCTTTTTCAGCACTGAAAAAAGTTACTACTAGT
GGTAGTGGtgcagcaaaaattttccaaaacgaTAGATAATAGTCCCATTG
AGTAACTACACGGCCCTCTGCCAACTCAGCAAATTGGACTTCAACACCAC
TCTCCCCTCTCTTTGAGGCTCAAGATCTTTTCGATAGCTAAAGAAATTCT
TATATACATATATAGACGATTATCAAATCATGAAGAACGGTGAAGAAAAT
AGTGCTCAATAACAAGTAGAGCTAAATCATTTCATATATTTCCTCTTTTT
AATTTCTGAAGAGAAATATATGAAATGATATAGACGATTATGTTAGATTG
AAGCAATACTGTCTATTTGTGAATTCCAATACCCTTTCTTCTTCCTGTTA
CAGAGATCACACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAG
GATTTCTTTTATGGTTATTGCAacaaagtgaaatatttttgtacatgGAA
CATTCAAACCTTACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGA
AACTACTTGACTTGAATACACAAGCAGTAACAGGGTTAGATGATATGACT
TTAGTCCCACAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTGTAA
GTAATTTCTAATGTTATTTTTCCAACCTTTAATGCATGTtcaactgaaaa
taaataaccgaatgtcgtttgATAGGGTTTTAGCCTGGGGATTTTAGTGA
GAAGTTTGGAAAGCAATCTTTGATAGACTTTTAAGGTAGGATCAAACCTT
TAAAAAGTACACTTCaaaaaaaCAATAttgaataatattttaaaacgcAT
CAGATTGACTGATAGGTGCTGTTAAATCCTATGCTTTCTTTGGTTATCTT
GAAGTGAATTGTTTAAAATTGAGAATAATTGTTTTTTCCTGACCAGAAAG
TTCTTGAAAGAAAAACCAAAGATGATCTCTGCATCTCATTAATTCATCAC
ttctctcattttttttatagtgAGCTCATTGGGCATACACAAACAAAACG
GTGGAGGGAGCTGGGATCTAACCTACATCTGGTTAAATTGATGCGATTGT
CATAAACCTCAATGACTATCCCAGGTATCCATACCACAACACAATGGTGA
GGTGAGATTTAATGGACATTAATGGTTCACACCAAATTAACACTTGGCAA
AAAACTTCGAGACGAATCCCAGATTTTTAGGACTAATCATCCTCTCTAAC
GTCATCAACCAGAAGTAATTCAAAATACACAGAACTGGAAGGATGACGAT
TCTCAGTTTTCGAATGGATAGTACAATAAGAGCTTGATATACTTCGTCGA
ATAGGGTGAAAATATAAAACTGGTATCAAACTTCAAACTAAAGCTGATCT
TAATTTCACCCAAGGACCGCTAGGGATTTTCGCTGGAAACCCCCATGATT
TCGTTAAGGTCCTACTTAGACGACACAATATATTGATGtacaatatttga
caatatcgttttcggaccgtaataTAAGAAGTAAATAACATGTGCTctat
tattataaaaaggaatttactttctgtaaacaatcccccatGTATTATTA
Gaaaattgcaaatcaagctgacaatatattgtggacaccttttcaatata
ttgccggcactcaGCAATTGCCTGACATTATATTGTGAGGTGTATGTAGC
CCGTGAAATTGATCGAAATGTATCAATATAAAATATGTAAGAATGATGGA
AAGTCGCACCTTGCATTGAATTTTAGATTTCAT

Coding sequence (CDS) from alignment at sc0000083_pilon:727885..730067+

>MSTRG.11480.5.p1 ID=MSTRG.11480.5.p1|Name=MSTRG.11480.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000083_pilon:727885..730067+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttcaaaacattataCGAAGTTGAGCATGAAGAGTTGGTTACATGTGAC
AACCTCATCACAAGGACAAGTTATTCTCGTTTGTGAACCTGCTGAAGATT
TAGCAATGAAATCGAATTGTCGATATTCCTTCGATACTGGCACGACTTGG
AAAGAGATCACACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGA
GGATTTCTTTTATGGTTATTGCAacaaagtgaaatatttttgtacatgGA
ACATTCAAACCTTACGATTGGATTATATCGAAGAGTCGCTCTTCAACGAG
AAACTACTTGACTTGAATACACAAGCAGTAACAGGGTTAGATGATATGAC
TTTAGTCCCACAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGGTtgA
GCTCATTGGGCATACACAAACAAAACGGTGGAGGGAGCTGGGATCTAACC
TACATCTGGTTAAATTGAttttcaaaacattataCGAAGTTGAGCATGAA
GAGTTGGTTACATGTGACAACCTCATCACAAGGACAAGTTATTCTCGTTT
GTGAACCTGCTGAAGATTTAGCAATGAAATCGAATTGTCGATATTCCTTC
GATACTGGCACGACTTGGAAAGAGATCACACCATTTGTTTCCCAATTGAA
GTTCTTCGTACCTTCAGAGGATTTCTTTTATGGTTATTGCAacaaagtga
aatatttttgtacatgGAACATTCAAACCTTACGATTGGATTATATCGAA
GAGTCGCTCTTCAACGAGAAACTACTTGACTTGAATACACAAGCAGTAAC
AGGGTTAGATGATATGACTTTAGTCCCACAACCTTCAGCGGACGGTGATG
TCCCAACGCTAGGGTtgAGCTCATTGGGCATACACAAACAAAACGGTGGA
GGGAGCTGGGATCTAACCTACATCTGGTTAAATTGAttttcaaaacatta
taCGAAGTTGAGCATGAAGAGTTGGTTACATGTGACAACCTCATCACAAG
GACAAGTTATTCTCGTTTGTGAACCTGCTGAAGATTTAGCAATGAAATCG
AATTGTCGATATTCCTTCGATACTGGCACGACTTGGAAAGAGATCACACC
ATTTGTTTCCCAATTGAAGTTCTTCGTACCTTCAGAGGATTTCTTTTATG
GTTATTGCAacaaagtgaaatatttttgtacatgGAACATTCAAACCTTA
CGATTGGATTATATCGAAGAGTCGCTCTTCAACGAGAAACTACTTGACTT
GAATACACAAGCAGTAACAGGGTTAGATGATATGACTTTAGTCCCACAAC
CTTCAGCGGACGGTGATGTCCCAACGCTAGGGTtgAGCTCATTGGGCATA
CACAAACAAAACGGTGGAGGGAGCTGGGATCTAACCTACATCTGGTTAAA
TTGAttttcaaaacattataCGAAGTTGAGCATGAAGAGTTGGTTACATG
TGACAACCTCATCACAAGGACAAGTTATTCTCGTTTGTGAACCTGCTGAA
GATTTAGCAATGAAATCGAATTGTCGATATTCCTTCGATACTGGCACGAC
TTGGAAAGAGATCACACCATTTGTTTCCCAATTGAAGTTCTTCGTACCTT
CAGAGGATTTCTTTTATGGTTATTGCAacaaagtgaaatatttttgtaca
tgGAACATTCAAACCTTACGATTGGATTATATCGAAGAGTCGCTCTTCAA
CGAGAAACTACTTGACTTGAATACACAAGCAGTAACAGGGTTAGATGATA
TGACTTTAGTCCCACAACCTTCAGCGGACGGTGATGTCCCAACGCTAGGG
TtgAGCTCATTGGGCATACACAAACAAAACGGTGGAGGGAGCTGGGATCT
AACCTACATCTGGTTAAATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11480MSTRG.11480Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11480.5.p1MSTRG.11480.5.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11480.5.p1.exon1MSTRG.11480.5.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11480.5.p1.exon2MSTRG.11480.5.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11480.5.p1.exon3MSTRG.11480.5.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11480.5.p1.exon4MSTRG.11480.5.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:727885..730067 +