MSTRG.11474.1.p1 (mRNA) -

Overview
NameMSTRG.11474.1.p1
Unique NameMSTRG.11474.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:637296..640570+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11474.1.p1 ID=MSTRG.11474.1.p1|Name=MSTRG.11474.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3275bp|location=Sequence derived from alignment at sc0000083_pilon:637296..640570+ (Clytia hemisphaerica_ch_hm2_pilon)
GTGAAGGGAAGAAACTCACACAACGAAGACGATCGAGCAGCCAACCAAGA
GGGCCAAGAGTGTGCTGATACCGATAATGGAAGGTTAAGGATCGCGCTGC
AGTATACAATAGAGGAGTGTGAACAGCTTCACTCACAAAACAAGGCTTTC
AAAAGTGAAGTACGTTCACTGAAACACGAGCAAGATAAATCCTTGCTTAA
ACAAGAAACTGAATCATACGCAAAGGACATCATGATCAACAAATTGACTG
ATGAATGTTGTTTGGCAAGACGGCAACTCAAAGATTTTACATCGGACGTT
GAACACGATGTCAAGTTACTGGCACAGAACATGACTCACCAGTTCCAATC
AAGCTTGGAAAATGCTGTACAAAGCCACGAGGATACTCAAAAAGCGTTCG
TCGAATTCCAATCAAAGTTGGAAGCTGAGCAACATCAGAGTTTATTGAAT
CAGGAACTGATTAAAGAGCTTCAATCAAGTTTGGAGATGGAGAAACATGC
TCACAATGCTTCCGACCAAAGTGTcgtatttttgaaatctaaactAGTGG
AAGAGCAGAAGAGAAGTCAGGCTTCAATAAACGAAGTTGCGAAACTTACT
GAGCAATGTGTTCTTGCTAAGGAGGGCCTTCAGAATCTGACGAGTGAAGT
TACTGAGAAAGTTGAAGCTGTCACCAGAGGATTTAAATCGATTCTGGAAA
GAGAAAAACTGTCTCGGGATGCTTCAGAACAGAAGGTTGTGTTTTTGGAG
TCTCAATTCGCAGAGGAAAAGAACAGACACGAGGAGTCAAAAGGCGAAGT
TTCGAGACTTACTGAACAATGCCAACTTGCTAAAAAGTATGTTCAGGCAT
TGGAGTCTGAGGTTGGTGAGAAAATCCGGGAAATCACCAGCAATTTTCAA
TCTTTGCTTAAGCAAGAAAGACATGAGCATGAGCTGTCTATGAAAAATTT
CGATTCTCAATTGAAAGCATACCAACAAGAGTCATTATCACGCAATAAAC
TCATCGCTGATTTACAAGCAGAGTTGACCGAAGAGAAGAAAGGTCacgat
ttgacaaaaaaaataacgGATTTGGAGGTGAAAGCCAAGGAGTTAGCTAA
AACAGAAGTTGCCAAGCTCACTAAACAGTTCCATCTTGCTAAGGAGAATG
TCCAAAGTTTGGAGACGGAAGTAGGTGACAGAATTAAGGAGGTAACCAGC
GAGTtcgaaaatattcttcaaaaagaaaagcACGCCAACGAaactgttat
gaaaaatatTACATCTAAATTTGATACTGAATTGGCGATGGTGAAACAAG
ATGCTctcaaaagtgaaaaacttgccAGTGACTTGAAAAAAGAGCTGGCT
GGAGAAAAGAAAGGACACGATTTGGCCAAAGAAAGAATAATCGAATTCCA
AACAAAACTATTAAGTGAGCAAACAGAAAATGAGAAGCTCACAAATGAAT
TCATTGTAGCTAAGGCGCATATTCAGAAGATGGATATGGAAGTGGTTGAA
AAAATCAAGGAGTTGAGTACTAGTCTAGAATTAGCTATCagtaaagaaaa
acaagcaCATCAACTTACTAAGTTTAGGCTGGAAGAAATGGCAGATCTac
gtcaaaaagaaaaagtcaacctTGAAAAAGAGTTGCTTGAAGCAAAGCAA
GAGAACAAATTAGTAAACGAACAAATGGATGGATTGAAGAGACAATTGGA
CAGTGAACGGAAAGATAAAGAGATTGCTCAAAGTGAAGCGATGAAACTTA
ATGAGCAATGTGACCAAGCTAAGATGCAGGTCCACGAGATGGAGGTAGAA
GTAGGAGAACAGATTAAAGAGATCAGCGCTAGTCTGGAATTATCTGTCAT
TAAAGAACAGAGCGAGCATCAAGTGACAAAGCAGAAACTGAAAGAAGTGG
AAAGTTTGCATAACAATGGAAAAGAAAGGTTCGAAGAGGAGATGGCATCC
AAACAAAATGAACTGAGGAGCCAGGAGCAAACGATTGTTGATCTCACTGA
AAAACTTGCCCACgttgaaaatctattttttgatgagaagAAGTATTCAA
CGAACGAAATCGAATCTCTAAACCAACAACTAGATTCAAAGACCAAATTT
GCCAAGAACCTAAATGTTCAGCTCGAAGACTTGGCAGAAGAGCTTAACCT
GACTGATGATAATTACCACCAAATACAAGAAGAGCTGAAAGCAATGTCCA
CAAAAGCGTACACTCTTCAACAGAGATTACAACAACGAGAGCTAGAAATA
CGAAAGCAAGTGGATGAGATTTTTACGTTAGAAATCAATGAGAAAAAGGG
AAACTCAAACCGCCAACGCTTGAAATTCGACTTAGGTTCAAGCAATAAAC
AGCTTAAACACCAAAAAGCTCTGAACCGAGACCTAATCAACCAGGTAAGA
TATATTACTTCTATATATGAGAGAATTATATCCAGCTTATTCAGCCCAGT
TAAGTGGTTTAAACATCTCGATTTTCTCCAGAACTTTTGAGGAATTTTCA
AGCGAATACTGACTGACGTTAGTTGATCCTCAGATCCACTTTTCGTCAAA
CTTTTGTTTGGTAGCTTTAAGTGTAAATACTTTATCTCTGGTTTAGACGC
CTCACTTCTTTTGACGTcgatgcaatgacttctttcgatcttttcaaaac
aaagattttaactgccaactttctaTCAATTTATTGcttactctaacaat
tagaatagactGGGCAAAAAgttggccgtctaaactagagcttagtttaa
aaaacttcaattttgtattttagctACGACAAAAAGATGATTTATTGACG
AAGACCGAAAACAAACTATCGGCAACCAAACGATTCGTAGAAGTTTTAAA
AAACAATGATGCTTCTAAAGATGGTGGCGATAATTCgaacaaatccaaaa
agaaaccAAATAGAAAACGTAAATCGAAATCAAGTCATGTCATTCAAGTC
CTTCCTAGACCAACAATAACAAACTTGAAAGAGGAAGAAGTTAACCAAAC
AGATGATGCCCGATTGAGGGAGGAGTtcacaaatgaaaatattacgCCCC
AAACGCCAAATAACACGATCGTTGGGGATAAAGGTGAAAACTACACCAAT
ATAGATAATATTACCATGAAACCAAAAGTTGTTCCAATCACTGCTAATAC
CAACTGTCAAGAAAAGTACAAGAACAACACACAAATAGCAGAAAATACTG
TAAAAGAATTTCCATACGGTAAGGATAATGGAAATAACACAGAAATTTCG
AATGTGAAAAACACATCTGACGCAA

Coding sequence (CDS) from alignment at sc0000083_pilon:637296..640570+

>MSTRG.11474.1.p1 ID=MSTRG.11474.1.p1|Name=MSTRG.11474.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5790bp|location=Sequence derived from alignment at sc0000083_pilon:637296..640570+ (Clytia hemisphaerica_ch_hm2_pilon)
GTGAAGGGAAGAAACTCACACAACGAAGACGATCGAGCAGCCAACCAAGA
GGGCCAAGAGTGTGCTGATACCGATAATGGAAGGTTAAGGATCGCGCTGC
AGTATACAATAGAGGAGTGTGAACAGCTTCACTCACAAAACAAGGCTTTC
AAAAGTGAAGTACGTTCACTGAAACACGAGCAAGATAAATCCTTGCTTAA
ACAAGAAACTGAATCATACGCAAAGGACATCATGATCAACAAATTGACTG
ATGAATGTTGTTTGGCAAGACGGCAACTCAAAGATTTTACATCGGACGTT
GAACACGATGTCAAGTTACTGGCACAGAACATGACTCACCAGTTCCAATC
AAGCTTGGAAAATGCTGTACAAAGCCACGAGGATACTCAAAAAGCGTTCG
TCGAATTCCAATCAAAGTTGGAAGCTGAGCAACATCAGAGTTTATTGAAT
CAGGAACTGATTAAAGAGCTTCAATCAAGTTTGGAGATGGAGAAACATGC
TCACAATGCTTCCGACCAAAGTGTcgtatttttgaaatctaaactAGTGG
AAGAGCAGAAGAGAAGTCAGGCTTCAATAAACGAAGTTGCGAAACTTACT
GAGCAATGTGTTCTTGCTAAGGAGGGCCTTCAGAATCTGACGAGTGAAGT
TACTGAGAAAGTTGAAGCTGTCACCAGAGGATTTAAATCGATTCTGGAAA
GAGAAAAACTGTCTCGGGATGCTTCAGAACAGAAGGTTGTGTTTTTGGAG
TCTCAATTCGCAGAGGAAAAGAACAGACACGAGGAGTCAAAAGGCGAAGT
TTCGAGACTTACTGAACAATGCCAACTTGCTAAAAAGTATGTTCAGGCAT
TGGAGTCTGAGGTTGGTGAGAAAATCCGGGAAATCACCAGCAATTTTCAA
TCTTTGCTTAAGCAAGAAAGACATGAGCATGAGCTGTCTATGAAAAATTT
CGATTCTCAATTGAAAGCATACCAACAAGAGTCATTATCACGCAATAAAC
TCATCGCTGATTTACAAGCAGAGTTGACCGAAGAGAAGAAAGGTCacgat
ttgacaaaaaaaataacgGATTTGGAGGTGAAAGCCAAGGAGTTAGCTAA
AACAGAAGTTGCCAAGCTCACTAAACAGTTCCATCTTGCTAAGGAGAATG
TCCAAAGTTTGGAGACGGAAGTAGGTGACAGAATTAAGGAGGTAACCAGC
GAGTtcgaaaatattcttcaaaaagaaaagcACGCCAACGAaactgttat
gaaaaatatTACATCTAAATTTGATACTGAATTGGCGATGGTGAAACAAG
ATGCTctcaaaagtgaaaaacttgccAGTGACTTGAAAAAAGAGCTGGCT
GGAGAAAAGAAAGGACACGATTTGGCCAAAGAAAGAATAATCGAATTCCA
AACAAAACTATTAAGTGAGCAAACAGAAAATGAGAAGCTCACAAATGAAT
TCATTGTAGCTAAGGCGCATATTCAGAAGATGGATATGGAAGTGGTTGAA
AAAATCAAGGAGTTGAGTACTAGTCTAGAATTAGCTATCagtaaagaaaa
acaagcaCATCAACTTACTAAGTTTAGGCTGGAAGAAATGGCAGATCTac
gtcaaaaagaaaaagtcaacctTGAAAAAGAGTTGCTTGAAGCAAAGCAA
GAGAACAAATTAGTAAACGAACAAATGGATGGATTGAAGAGACAATTGGA
CAGTGAACGGAAAGATAAAGAGATTGCTCAAAGTGAAGCGATGAAACTTA
ATGAGCAATGTGACCAAGCTAAGATGCAGGTCCACGAGATGGAGGTAGAA
GTAGGAGAACAGATTAAAGAGATCAGCGCTAGTCTGGAATTATCTGTCAT
TAAAGAACAGAGCGAGCATCAAGTGACAAAGCAGAAACTGAAAGAAGTGG
AAAGTTTGCATAACAATGGAAAAGAAAGGTTCGAAGAGGAGATGGCATCC
AAACAAAATGAACTGAGGAGCCAGGAGCAAACGATTGTTGATCTCACTGA
AAAACTTGCCCACgttgaaaatctattttttgatgagaagAAGTATTCAA
CGAACGAAATCGAATCTCTAAACCAACAACTAGATTCAAAGACCAAATTT
GCCAAGAACCTAAATGTTCAGCTCGAAGACTTGGCAGAAGAGCTTAACCT
GACTGATGATAATTACCACCAAATACAAGAAGAGCTGAAAGCAATGTCCA
CAAAAGCGTACACTCTTCAACAGAGATTACAACAACGAGAGCTAGAAATA
CGAAAGCAAGTGGATGAGATTTTTACGTTAGAAATCAATGAGAAAAAGGG
AAACTCAAACCGCCAACGCTTGAAATTCGACTTAGGTTCAAGCAATAAAC
AGCTTAAACACCAAAAAGCTCTGAACCGAGACCTAATCAACCAGctACGA
CAAAAAGATGATTTATTGACGAAGACCGAAAACAAACTATCGGCAACCAA
ACGATTCGTAGAAGTTTTAAAAAACAATGATGCTTCTAAAGATGGTGGCG
ATAATTCgaacaaatccaaaaagaaaccAAATAGAAAACGTAAATCGAAA
TCAAGTCATGTCATTCAAGTCCTTCCTAGACCAACAATAACAAACTTGAA
AGAGGAAGAAGTTAACCAAACAGATGATGCCCGATTGAGGGAGGAGTtca
caaatgaaaatattacgCCCCAAACGCCAAATAACACGATCGTTGGGGAT
AAAGGTGAAAACTACACCAATATAGATAATATTACCATGAAACCAAAAGT
TGTTCCAATCACTGCTAATACCAACTGTCAAGAAAAGTACAAGAACAACA
CACAAATAGCAGAAAATACTGTAAAAGAATTTCCATACGGTAAGGATAAT
GGAAATAACACAGAAATTTCGAATGTGAAAAACACATCTGACGCAGTGAA
GGGAAGAAACTCACACAACGAAGACGATCGAGCAGCCAACCAAGAGGGCC
AAGAGTGTGCTGATACCGATAATGGAAGGTTAAGGATCGCGCTGCAGTAT
ACAATAGAGGAGTGTGAACAGCTTCACTCACAAAACAAGGCTTTCAAAAG
TGAAGTACGTTCACTGAAACACGAGCAAGATAAATCCTTGCTTAAACAAG
AAACTGAATCATACGCAAAGGACATCATGATCAACAAATTGACTGATGAA
TGTTGTTTGGCAAGACGGCAACTCAAAGATTTTACATCGGACGTTGAACA
CGATGTCAAGTTACTGGCACAGAACATGACTCACCAGTTCCAATCAAGCT
TGGAAAATGCTGTACAAAGCCACGAGGATACTCAAAAAGCGTTCGTCGAA
TTCCAATCAAAGTTGGAAGCTGAGCAACATCAGAGTTTATTGAATCAGGA
ACTGATTAAAGAGCTTCAATCAAGTTTGGAGATGGAGAAACATGCTCACA
ATGCTTCCGACCAAAGTGTcgtatttttgaaatctaaactAGTGGAAGAG
CAGAAGAGAAGTCAGGCTTCAATAAACGAAGTTGCGAAACTTACTGAGCA
ATGTGTTCTTGCTAAGGAGGGCCTTCAGAATCTGACGAGTGAAGTTACTG
AGAAAGTTGAAGCTGTCACCAGAGGATTTAAATCGATTCTGGAAAGAGAA
AAACTGTCTCGGGATGCTTCAGAACAGAAGGTTGTGTTTTTGGAGTCTCA
ATTCGCAGAGGAAAAGAACAGACACGAGGAGTCAAAAGGCGAAGTTTCGA
GACTTACTGAACAATGCCAACTTGCTAAAAAGTATGTTCAGGCATTGGAG
TCTGAGGTTGGTGAGAAAATCCGGGAAATCACCAGCAATTTTCAATCTTT
GCTTAAGCAAGAAAGACATGAGCATGAGCTGTCTATGAAAAATTTCGATT
CTCAATTGAAAGCATACCAACAAGAGTCATTATCACGCAATAAACTCATC
GCTGATTTACAAGCAGAGTTGACCGAAGAGAAGAAAGGTCacgatttgac
aaaaaaaataacgGATTTGGAGGTGAAAGCCAAGGAGTTAGCTAAAACAG
AAGTTGCCAAGCTCACTAAACAGTTCCATCTTGCTAAGGAGAATGTCCAA
AGTTTGGAGACGGAAGTAGGTGACAGAATTAAGGAGGTAACCAGCGAGTt
cgaaaatattcttcaaaaagaaaagcACGCCAACGAaactgttatgaaaa
atatTACATCTAAATTTGATACTGAATTGGCGATGGTGAAACAAGATGCT
ctcaaaagtgaaaaacttgccAGTGACTTGAAAAAAGAGCTGGCTGGAGA
AAAGAAAGGACACGATTTGGCCAAAGAAAGAATAATCGAATTCCAAACAA
AACTATTAAGTGAGCAAACAGAAAATGAGAAGCTCACAAATGAATTCATT
GTAGCTAAGGCGCATATTCAGAAGATGGATATGGAAGTGGTTGAAAAAAT
CAAGGAGTTGAGTACTAGTCTAGAATTAGCTATCagtaaagaaaaacaag
caCATCAACTTACTAAGTTTAGGCTGGAAGAAATGGCAGATCTacgtcaa
aaagaaaaagtcaacctTGAAAAAGAGTTGCTTGAAGCAAAGCAAGAGAA
CAAATTAGTAAACGAACAAATGGATGGATTGAAGAGACAATTGGACAGTG
AACGGAAAGATAAAGAGATTGCTCAAAGTGAAGCGATGAAACTTAATGAG
CAATGTGACCAAGCTAAGATGCAGGTCCACGAGATGGAGGTAGAAGTAGG
AGAACAGATTAAAGAGATCAGCGCTAGTCTGGAATTATCTGTCATTAAAG
AACAGAGCGAGCATCAAGTGACAAAGCAGAAACTGAAAGAAGTGGAAAGT
TTGCATAACAATGGAAAAGAAAGGTTCGAAGAGGAGATGGCATCCAAACA
AAATGAACTGAGGAGCCAGGAGCAAACGATTGTTGATCTCACTGAAAAAC
TTGCCCACgttgaaaatctattttttgatgagaagAAGTATTCAACGAAC
GAAATCGAATCTCTAAACCAACAACTAGATTCAAAGACCAAATTTGCCAA
GAACCTAAATGTTCAGCTCGAAGACTTGGCAGAAGAGCTTAACCTGACTG
ATGATAATTACCACCAAATACAAGAAGAGCTGAAAGCAATGTCCACAAAA
GCGTACACTCTTCAACAGAGATTACAACAACGAGAGCTAGAAATACGAAA
GCAAGTGGATGAGATTTTTACGTTAGAAATCAATGAGAAAAAGGGAAACT
CAAACCGCCAACGCTTGAAATTCGACTTAGGTTCAAGCAATAAACAGCTT
AAACACCAAAAAGCTCTGAACCGAGACCTAATCAACCAGctACGACAAAA
AGATGATTTATTGACGAAGACCGAAAACAAACTATCGGCAACCAAACGAT
TCGTAGAAGTTTTAAAAAACAATGATGCTTCTAAAGATGGTGGCGATAAT
TCgaacaaatccaaaaagaaaccAAATAGAAAACGTAAATCGAAATCAAG
TCATGTCATTCAAGTCCTTCCTAGACCAACAATAACAAACTTGAAAGAGG
AAGAAGTTAACCAAACAGATGATGCCCGATTGAGGGAGGAGTtcacaaat
gaaaatattacgCCCCAAACGCCAAATAACACGATCGTTGGGGATAAAGG
TGAAAACTACACCAATATAGATAATATTACCATGAAACCAAAAGTTGTTC
CAATCACTGCTAATACCAACTGTCAAGAAAAGTACAAGAACAACACACAA
ATAGCAGAAAATACTGTAAAAGAATTTCCATACGGTAAGGATAATGGAAA
TAACACAGAAATTTCGAATGTGAAAAACACATCTGACGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11474MSTRG.11474Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11474.1.p1.exon1MSTRG.11474.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11474.1.p1.exon2MSTRG.11474.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11474.1.p1MSTRG.11474.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:637296..640570 +