MSTRG.11473.1.p1 (mRNA) -

Overview
NameMSTRG.11473.1.p1
Unique NameMSTRG.11473.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:627763..630442-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11473.1.p1 ID=MSTRG.11473.1.p1|Name=MSTRG.11473.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2680bp|location=Sequence derived from alignment at sc0000083_pilon:627763..630442- (Clytia hemisphaerica_ch_hm2_pilon)
TTTAGAAGTTTATTTTGAACGATGCAGAAGGTGTGCCCTGCAGCGAGAAA
ATTGTAAGATTTCTTTTTGATGGTTGTTATATAAATTTATGGCAGAATAT
ATTAAAAATATTATAAATCTTATTTCATTGTCTTTGTCAGAGATTGTAAT
TATTTTATTGTTGATATTTTAATTCACATATACTAGTAGTTTTTTTTCGG
AGTTAGATTATGCACACTTTTATCATGCTGACCGTTCCTTTTGTCTCCAG
CGTTGACCCAGTGATAACAATCAGGAGAAGTTTTCAAAACAACGTCCATC
TAGCGTCTGCTAGCGTCACCAGCTGATTATAGTTAAATAGACGAAACACC
ATTTCTTTCCAGCTAGGACTCTTTTAAGGAGCCGTTTCCTACTTCACTAC
ATAGCCTACATCAGGCCCGGCGGAAGCGGGGAGACTTCAGCCTCCCAACT
TTGATGAAATTTTTTCTCAAATTCCCAGCGAGTTTTATCTCATTTTGAGT
CTTCAGCCTCCCCACTTTTTACAGTGGTTCCGCCGGGCCTGTACATAACT
ACTATGTACACAGGTACAAAACATTTCTGCTAGCCAAAAAGGGAACATAG
CTCAATCTTGATTATTTTTAGGACTTTAACAAAGAATAAAAATATTTGGA
GCACGGAGAAGGGATTGACAAACTCATGAACGAAGTTTAGCGAGGAATAT
GCCTTGGTGAATACCACCATAAAATTGTACGTCTTATTTCTTTTTTACGT
TTTCAAACATACTTTGTTATATTATAGCTCGAGCTTAAAGGTTTTATGTT
TACATAACTGTTCCCGTTACATATCAGACACATATTTCATATCAGGACAA
TGTCTGCCTATTGTTATACTGTATTATGCTGATATAAGCAAAACATGTTT
TTCTTTTCATCTTTCTGACCAATCTTGCTCCACATCTGTGTCAATTCAAT
ATTAAAAAGCTTTTGGATTAAAATTGATGAGTAAGCAAACGATATCACTC
TTATCTAAAAACAAAACCATTAAACAAAGGATTTTCTGATAAGAGAAATA
CAGAAAAATACAATGGGATATACAGTATTGCTCTTTTTCAATTCATGATC
TTCGTGACGTAATATACTACCCGGAAACACCTCGTTTTGGCCCAGTGCGG
CAAATTTAAAGTACAGTGTAAACTCCCGGTTATTCGAAGCTCCAAGGGGG
ATAACAATTTACTTCGAATAACCGGGATTCTATTGTAGAAATATTCTTCT
CATAATCTACCAATTGACTACTGGCAAAAATCGGCGTAGAAAACACTACA
TCGTGAATATCATGAATCGGTTGAAGCACTTTTGGATAGTTTTCAATATT
TTCAAGGCATAAGGCAAAATTCAGCAAAATTCCCAAATCTTCCGAAAGAC
ATAATGCCATTCACTATCTTTTTAGACACGATGCATAAACTTCTTCTCCT
ACTCATATTACTATCGTCACACAAACTGACGTCATCCAAAGAGCACAAAG
GTTTGTACTACCACGAACTTCTTTTACACCAACTTATCTTGCATAAATTT
TATTCGTAGAAAAATGTACACGTTTTTTTTATAAGAACATCCAAAATTTT
TGAAGCCTTCCGGTGTTCTTAACTTTTTGAAATTTAAGCCTAAAAATGTT
CTTATTCTCACCATTTTTTGAGCATTTTTTTCCATTTTCCTAAGAAACCG
GGTGTTTTAGAGTCTGCAAAGCCCCAAGATGTTCTTTAACTTGTTCTTAG
CATTTTGGCCATCAAAGCCTTATGTTCTTATGTAGTTTGTTCTTATTAAA
AAAAGGTGTACAAGAGCCCAAAGCGCATCACTTTTCACTAAAAGTCTAGA
TTTGCGTAACAAAATCTATTTTTGGGATGCATCATTCACCTTCTTTGCTT
GCTGATTCTATTTTACTCAATACTGAGTTTATGTATTTGCACTTTTGAGG
ACGGAAGAGTAACTGAAAAGATTTGAAATAACCTGCAATTTTGGCCTTCA
AAATCGAGTGCGGTAACCTCAGAAGCTAACTGTTTCCGTCACAGAAAAAC
ACAGATACATAAACTCGCTAATATATTCCCAAGGGTGTCATATCCACTGA
CCTTCATATATTCCTGGACCAAGCTCCAATCAAAGATTTTGCTTGACCGG
GATTGAGAAACTTGGTCCAGGGTATATAAAGGTCAGTGGTCATATCTCTG
TTGACGAATTATACAAAGGTTGTTGACTGTTCATATCTTTCATTTGTTTT
CTTAGGTTCTGGACTAGCTAGTATTTCAACGCAACGATATAACCAAAACA
CTGTACATACAACCCATGACATTCATACAACTCATATAGTCTCTGAGAAG
AGAACTGAAAATAAATCACCGCATGGTTTGAGTGCAATATTGAATAAAAA
ATTAGTCAAAGACAATAGTAATGTAAATTTAAAAGACATTAAAGAAATTC
ATAAAATTGGAAATGTTGAAAAATTTGAACCGACCAATTTTAAGAAGAGT
AAACACGTAAGAGCAAGGCATAAAACTGGATCCAAAAAGTCACACGGCTC
CAAAGGAAAATCTAAATCTCATAAGTCGGAAGGTATGTACAAGGTGTCCC
TAATTAAAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTG
TGTTATCGCTAAAATATAAGAACGTTCTCC

Coding sequence (CDS) from alignment at sc0000083_pilon:627763..630442-

>MSTRG.11473.1.p1 ID=MSTRG.11473.1.p1|Name=MSTRG.11473.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000083_pilon:627763..630442- (Clytia hemisphaerica_ch_hm2_pilon)
GTTCTGGACTAGCTAGTATTTCAACGCAACGATATAACCAAAACACTGTA
CATACAACCCATGACATTCATACAACTCATATAGTCTCTGAGAAGAGAAC
TGAAAATAAATCACCGCATGGTTTGAGTGCAATATTGAATAAAAAATTAG
TCAAAGACAATAGTAATGTAAATTTAAAAGACATTAAAGAAATTCATAAA
ATTGGAAATGTTGAAAAATTTGAACCGACCAATTTTAAGAAGAGTAAACA
CGTAAGAGCAAGGCATAAAACTGGATCCAAAAAGTCACACGGCTCCAAAG
GAAAATCTAAATCTCATAAGTCGGAAGGTATGTACAAGGTGTCCCTAATT
AAAGTATCGAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTA
TCGCTAAATGCATAAACTTCTTCTCCTACTCATATTACTATCGTCACACA
AACTGACGTCATCCAAAGAGCACAAAGGTTCTGGACTAGCTAGTATTTCA
ACGCAACGATATAACCAAAACACTGTACATACAACCCATGACATTCATAC
AACTCATATAGTCTCTGAGAAGAGAACTGAAAATAAATCACCGCATGGTT
TGAGTGCAATATTGAATAAAAAATTAGTCAAAGACAATAGTAATGTAAAT
TTAAAAGACATTAAAGAAATTCATAAAATTGGAAATGTTGAAAAATTTGA
ACCGACCAATTTTAAGAAGAGTAAACACGTAAGAGCAAGGCATAAAACTG
GATCCAAAAAGTCACACGGCTCCAAAGGAAAATCTAAATCTCATAAGTCG
GAAGGTATGTACAAGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCG
ATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAATGCATAAACTTCTTC
TCCTACTCATATTACTATCGTCACACAAACTGACGTCATCCAAAGAGCAC
AAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11473MSTRG.11473Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11473.1.p1MSTRG.11473.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11473.1.p1.exon4MSTRG.11473.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11473.1.p1.exon3MSTRG.11473.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11473.1.p1.exon2MSTRG.11473.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11473.1.p1.exon1MSTRG.11473.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:627763..630442 -