MSTRG.1147.1.p1 (mRNA) -

Overview
NameMSTRG.1147.1.p1
Unique NameMSTRG.1147.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:2999607..3003671+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1147.1.p1 ID=MSTRG.1147.1.p1|Name=MSTRG.1147.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4065bp|location=Sequence derived from alignment at sc0000005_pilon:2999607..3003671+ (Clytia hemisphaerica_ch_hm2_pilon)
CACACAGAAAATGCTGCCCAACTCTCCTATAACTTGACAGTTGATACCTA
ACCCTTGGTATATATATAAcacgaaaaaatcaaaatacaaaaaaaattaa
gaaagatttatattttttgggCGAGATGTTCAAGTTGGTTGTATTAGCTG
GTaaggttttgtttaaaatttgaaaacacttTCTTTACCTTGGtcatgta
aatatttttatatttacacAACGCGCCTAAACTACATTGACCCAGATTGA
CCAGAGGAAAATtgattccaaaatttttcatttctacAGCACAGGGTTCA
TCCTGCACATTATTTTTTGACTCTTATTGCTTATTTTTCTATACCATTTT
CTTGATAAAAGTTTCCTGTACTGGTCGACGAGCAGTGAAAATATACCACT
TCATAATAACGaaaaaaaTATCTGTTGCCACTATTTGTAGCTTTTGAAAG
TTCTAAATGACTatacaaaatcttttttgagtATTTGATATACAAGTAAG
TACAAGTAATGTTTCAACCAATCCAATTTTCTTCAATTCAACAGTTTTGT
TCGCTTCCCAATGTTTGCTGGTGGAAGCAAGCTGTGGATGTCAAAATAAC
GGCCAATGTGGTGCAGATTTCACGTGTACTTGTCCTGATGGTTTCTATGG
CCCCATTTGCAACCAATGTAAGTTATTCATTCTTGAATATTTTATCGTTC
ACTTGATGAAGAATCTGAAGtatgaaacaaaaaacattttgttttgtttg
aaggTCAGAACAATGCACGTATACACCTTCAACTAGATCGTTGGAGAAAG
TTAAGTTGGAGTTATTGAAAATTCGCGAGTTATCGAGGCTTATTAATAAG
GGTTTGGTTACTGAAGAGGCCAGCGaaattcgagttaaggaaacattcga
CTCATAGAGGTTCGACTTATGGAAACTCTACTGCTTATTTATgatcaaat
attttcttcacaTTTTAGACGCAGAGACATACACCATCCGCTACGAATCA
ACACCCAGTGGTATCCGAACATCTGACATCACCAACGGCTTCAAATTGAA
ACTCTTaagccaaaaaatcacaaaatctttcTCAGTCGGTCTCGGCAATT
TATACGCTGTGACATTCTATCAAGCACTTACTGAAGCCGAGCGTCGTAAA
TTACAATCTGTAGCGTCAGATGTTGCGGCGGGAACTACGGTAGCCGAGAT
CAGTGATTTCAATGAATGCGTCGACGGAAAACAATCGTGCTACAATGGAT
TAAAATGTATCAATACACAATATTCCTTCAGATGTGGATGCCCAGAAGGT
TATGAAGTCAAAGAAAACAGATGTATACAAGGTAAGGGGTCTCAATCGGT
CAGGGTTTTAGATAGTCCCGTTTTGTGTTCATTATGAAGTGCTCAATAAT
TTACTCATCCAACTTTGAGTTGGCTTTCGAATGAAAAAGAGTTTTAATTA
AAAcgtttcttgtttttcttcgCGTTTCTCGTATTGACGGATGTGACGGT
TCGATAGATTAATGGCCGTTAGTTACATAGTCGTCACTTTGATAACATCT
GTCCTTCTCTCTGTCAGACTATTTCCTTTGATCTTAGTTTCACATAGAAT
CGAGAAAATATTCCAAACCCTATGAGATGGGAGTGTTTTAGGGTGAAATT
TAGAGGCAGTCGAAtcgattttctttgaaattgagATTCTCTCGAAAATA
ATCAAAGTGAGACTGTTCTCAAATAAAGATAATGAAAAGTTATTAGCCTT
ATTAATCCATGATATACACGctttactttttacatttacCTCTGCACTCA
ATACTTGGATCTAAAACCTGCCATTGAAGAAATTCATATTATTTTCAACT
TATTCTTTTTCCTTCTCTACAGAGGTTGACAGTAATGCCAAGACAGTCAT
TTACGTTTGGGCTGGTGCAGTTGGTGCAGTTATCTTATTTACACTTGGTT
GTCTCATGTTCTACAGACacagaaaaatcgaaaaagggtaagaaaatttg
taacttatcaaattctttaaaattgatCTTTAAACAGTATTTTTGCCAAG
CAGGATAGTTTAAAGAATTATCAAATTCAGTTAGATATCATACTGAAAAA
CATACCTTTCcgcaatttcaaagaaaatgtgtTTTTCGATGAAACAAAAT
GATCAGAAAAACCACgagttgtttatttttaataacGGGTTTCCGTTTGA
GTCATCTCACGTCCTAATTATATAACCCTCTCATTACCTTAGTAATTAAT
ATGAAGCTTTAAATAATGACATGATTAGCTTTTTAATTGTTCCTGAAACT
CATTATGTTTTGCGACGAATTACTGTGTCTCTTTCCGGATGAGATTAAAG
ATCGAAAGTTGATATTAGCTATTATTCTTCCTTCTATATTTTTCTCAACt
acctttgagaaaaataatgatttttaaaaatttctcttATATTCCATAAA
ACAATACACGTGAAAAGATTCCAATCAAGCAAACCACGTCGGTAATAAAA
TCCTCTAGTCCAAAATTGTACAATTTATACCTAACAGCTTTCGACGGGGC
CTCCAAACAATAAAATGTCACTAAATGATATCATTCGTATTTCCCTTACA
GAAAGAAAAGCGCTTTTGAATACCAAAAGAAGATGGCTAACCGTGGACAA
TTGACACCAACAAACTTGAGTGAATACGAAGGACAACACGGTCGCAGAGG
CTCCCCATCCGCATCTGTGGTTGATGGTCACACCCGATACTCGATGGGTG
ATATCGGTTCCGATGTTTACTCTTACAATGCGAATTACAATCAAGATCCA
AGTGCTTATTATGGTACACAAACTAGATTATCAATCCCTATGGACAATTC
TCAAGTCAATCCCGGTTATGAACCAACACCGGAACACCTTAGATTCCCAT
CGACCGGTAGTTACACAAACAACGGAGCCATGGGAACTTACGGACAACCA
GAAACAGACAACGTATACAATCCACATGCGCAAATGGGAAACTCGCCAAA
CACACAAGATAACGCTAATACGTTTACTAATACAACGACTAACCCAACCG
CCACAGATGAAGTCCCTCTGCATTAAATATCAAATTAATGATTAAGCGGC
GAGGGCCAACCcgttgagtttaaagccccgatgGGGTTAGATATGAAACT
CTTGGATGAGAAATGAAGCCGCTTATTTCCCATCCTAAAAGCATGACCCG
AGGGGTTCTCACACAAACGCCAGGCTTACATGTCACGTGAAAACGAAGAA
AGTGCTAGACACAAGCTGATTTTCTAAATCCAGCGGCAATCTTAGGACTT
CACTGTTTCttgattgaaaaagatttaagggctttaaactcaatcgGTTA
ATCGAAACAAGGTAACGGCCCTGGAAAAGTCAGTGTCGGTCATAAAAATT
TGGAGTTTTATatggaaaatctatttttaagaATTAGCTTTAATGTTGAT
ATTGAAATTTCATTACGTAAGTAACTGCTACACTTTAAACCTAGTAAAAT
CGCAGGTCTGATATCAATGAGTAGGCTCTCATCAACCATACCTAAATTTA
CATATTTGGGTATTTCTTAACAATAGCACTAAATGATTTTGATCCATTAC
AAATGtaaattttctataatttgtcCCTTTTAATGGATTCTATTTATTGa
gtaaaaaattaaatagtTTCACTTGCTGGCATAAGGAAATAACAAATTAG
TGATGGTATATAATTAATGAGGTCTACTTAATACGTGTTACGTAATGATG
gccaattaaaaattttaattgacaaaatctattatttatttatttgtttt
ctgttcaagttttttacaattttagaaTATCTTCAGATATATTATATTAT
GGTTTCAAACGATCTTTAGCCTACAATTTTGCAATCATTTAtctgtaaat
atattttttttagtttttagcaataatttttatttttcaaatttttgacc
tcatttttttaatgaggttatgtattgttttaaaaagacaatatctttag
ataaaaaataaatagaaaaaacgATTTATGGaacaatttttataagaaca
attagggttaaaacg

Coding sequence (CDS) from alignment at sc0000005_pilon:2999607..3003671+

>MSTRG.1147.1.p1 ID=MSTRG.1147.1.p1|Name=MSTRG.1147.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5505bp|location=Sequence derived from alignment at sc0000005_pilon:2999607..3003671+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCAAGTTGGTTGTATTAGCTGTTTTGTTCGCTTCCCAATGTTTGCT
GGTGGAAGCAAGCTGTGGATGTCAAAATAACGGCCAATGTGGTGCAGATT
TCACGTGTACTTGTCCTGATGGTTTCTATGGCCCCATTTGCAACCAATAC
GCAGAGACATACACCATCCGCTACGAATCAACACCCAGTGGTATCCGAAC
ATCTGACATCACCAACGGCTTCAAATTGAAACTCTTaagccaaaaaatca
caaaatctttcTCAGTCGGTCTCGGCAATTTATACGCTGTGACATTCTAT
CAAGCACTTACTGAAGCCGAGCGTCGTAAATTACAATCTGTAGCGTCAGA
TGTTGCGGCGGGAACTACGGTAGCCGAGATCAGTGATTTCAATGAATGCG
TCGACGGAAAACAATCGTGCTACAATGGATTAAAATGTATCAATACACAA
TATTCCTTCAGATGTGGATGCCCAGAAGGTTATGAAGTCAAAGAAAACAG
ATGTATACAAGAGGTTGACAGTAATGCCAAGACAGTCATTTACGTTTGGG
CTGGTGCAGTTGGTGCAGTTATCTTATTTACACTTGGTTGTCTCATGTTC
TACAGACacagaaaaatcgaaaaaggAAAGAAAAGCGCTTTTGAATACCA
AAAGAAGATGGCTAACCGTGGACAATTGACACCAACAAACTTGAGTGAAT
ACGAAGGACAACACGGTCGCAGAGGCTCCCCATCCGCATCTGTGGTTGAT
GGTCACACCCGATACTCGATGGGTGATATCGGTTCCGATGTTTACTCTTA
CAATGCGAATTACAATCAAGATCCAAGTGCTTATTATGGTACACAAACTA
GATTATCAATCCCTATGGACAATTCTCAAGTCAATCCCGGTTATGAACCA
ACACCGGAACACCTTAGATTCCCATCGACCGGTAGTTACACAAACAACGG
AGCCATGGGAACTTACGGACAACCAGAAACAGACAACGTATACAATCCAC
ATGCGCAAATGGGAAACTCGCCAAACACACAAGATAACGCTAATACGTTT
ACTAATACAACGACTAACCCAACCGCCACAGATGAAGTCCCTCTGCATTA
AATGTTCAAGTTGGTTGTATTAGCTGTTTTGTTCGCTTCCCAATGTTTGC
TGGTGGAAGCAAGCTGTGGATGTCAAAATAACGGCCAATGTGGTGCAGAT
TTCACGTGTACTTGTCCTGATGGTTTCTATGGCCCCATTTGCAACCAATA
CGCAGAGACATACACCATCCGCTACGAATCAACACCCAGTGGTATCCGAA
CATCTGACATCACCAACGGCTTCAAATTGAAACTCTTaagccaaaaaatc
acaaaatctttcTCAGTCGGTCTCGGCAATTTATACGCTGTGACATTCTA
TCAAGCACTTACTGAAGCCGAGCGTCGTAAATTACAATCTGTAGCGTCAG
ATGTTGCGGCGGGAACTACGGTAGCCGAGATCAGTGATTTCAATGAATGC
GTCGACGGAAAACAATCGTGCTACAATGGATTAAAATGTATCAATACACA
ATATTCCTTCAGATGTGGATGCCCAGAAGGTTATGAAGTCAAAGAAAACA
GATGTATACAAGAGGTTGACAGTAATGCCAAGACAGTCATTTACGTTTGG
GCTGGTGCAGTTGGTGCAGTTATCTTATTTACACTTGGTTGTCTCATGTT
CTACAGACacagaaaaatcgaaaaaggAAAGAAAAGCGCTTTTGAATACC
AAAAGAAGATGGCTAACCGTGGACAATTGACACCAACAAACTTGAGTGAA
TACGAAGGACAACACGGTCGCAGAGGCTCCCCATCCGCATCTGTGGTTGA
TGGTCACACCCGATACTCGATGGGTGATATCGGTTCCGATGTTTACTCTT
ACAATGCGAATTACAATCAAGATCCAAGTGCTTATTATGGTACACAAACT
AGATTATCAATCCCTATGGACAATTCTCAAGTCAATCCCGGTTATGAACC
AACACCGGAACACCTTAGATTCCCATCGACCGGTAGTTACACAAACAACG
GAGCCATGGGAACTTACGGACAACCAGAAACAGACAACGTATACAATCCA
CATGCGCAAATGGGAAACTCGCCAAACACACAAGATAACGCTAATACGTT
TACTAATACAACGACTAACCCAACCGCCACAGATGAAGTCCCTCTGCATT
AAATGTTCAAGTTGGTTGTATTAGCTGTTTTGTTCGCTTCCCAATGTTTG
CTGGTGGAAGCAAGCTGTGGATGTCAAAATAACGGCCAATGTGGTGCAGA
TTTCACGTGTACTTGTCCTGATGGTTTCTATGGCCCCATTTGCAACCAAT
ACGCAGAGACATACACCATCCGCTACGAATCAACACCCAGTGGTATCCGA
ACATCTGACATCACCAACGGCTTCAAATTGAAACTCTTaagccaaaaaat
cacaaaatctttcTCAGTCGGTCTCGGCAATTTATACGCTGTGACATTCT
ATCAAGCACTTACTGAAGCCGAGCGTCGTAAATTACAATCTGTAGCGTCA
GATGTTGCGGCGGGAACTACGGTAGCCGAGATCAGTGATTTCAATGAATG
CGTCGACGGAAAACAATCGTGCTACAATGGATTAAAATGTATCAATACAC
AATATTCCTTCAGATGTGGATGCCCAGAAGGTTATGAAGTCAAAGAAAAC
AGATGTATACAAGAGGTTGACAGTAATGCCAAGACAGTCATTTACGTTTG
GGCTGGTGCAGTTGGTGCAGTTATCTTATTTACACTTGGTTGTCTCATGT
TCTACAGACacagaaaaatcgaaaaaggAAAGAAAAGCGCTTTTGAATAC
CAAAAGAAGATGGCTAACCGTGGACAATTGACACCAACAAACTTGAGTGA
ATACGAAGGACAACACGGTCGCAGAGGCTCCCCATCCGCATCTGTGGTTG
ATGGTCACACCCGATACTCGATGGGTGATATCGGTTCCGATGTTTACTCT
TACAATGCGAATTACAATCAAGATCCAAGTGCTTATTATGGTACACAAAC
TAGATTATCAATCCCTATGGACAATTCTCAAGTCAATCCCGGTTATGAAC
CAACACCGGAACACCTTAGATTCCCATCGACCGGTAGTTACACAAACAAC
GGAGCCATGGGAACTTACGGACAACCAGAAACAGACAACGTATACAATCC
ACATGCGCAAATGGGAAACTCGCCAAACACACAAGATAACGCTAATACGT
TTACTAATACAACGACTAACCCAACCGCCACAGATGAAGTCCCTCTGCAT
TAAATGTTCAAGTTGGTTGTATTAGCTGTTTTGTTCGCTTCCCAATGTTT
GCTGGTGGAAGCAAGCTGTGGATGTCAAAATAACGGCCAATGTGGTGCAG
ATTTCACGTGTACTTGTCCTGATGGTTTCTATGGCCCCATTTGCAACCAA
TACGCAGAGACATACACCATCCGCTACGAATCAACACCCAGTGGTATCCG
AACATCTGACATCACCAACGGCTTCAAATTGAAACTCTTaagccaaaaaa
tcacaaaatctttcTCAGTCGGTCTCGGCAATTTATACGCTGTGACATTC
TATCAAGCACTTACTGAAGCCGAGCGTCGTAAATTACAATCTGTAGCGTC
AGATGTTGCGGCGGGAACTACGGTAGCCGAGATCAGTGATTTCAATGAAT
GCGTCGACGGAAAACAATCGTGCTACAATGGATTAAAATGTATCAATACA
CAATATTCCTTCAGATGTGGATGCCCAGAAGGTTATGAAGTCAAAGAAAA
CAGATGTATACAAGAGGTTGACAGTAATGCCAAGACAGTCATTTACGTTT
GGGCTGGTGCAGTTGGTGCAGTTATCTTATTTACACTTGGTTGTCTCATG
TTCTACAGACacagaaaaatcgaaaaaggAAAGAAAAGCGCTTTTGAATA
CCAAAAGAAGATGGCTAACCGTGGACAATTGACACCAACAAACTTGAGTG
AATACGAAGGACAACACGGTCGCAGAGGCTCCCCATCCGCATCTGTGGTT
GATGGTCACACCCGATACTCGATGGGTGATATCGGTTCCGATGTTTACTC
TTACAATGCGAATTACAATCAAGATCCAAGTGCTTATTATGGTACACAAA
CTAGATTATCAATCCCTATGGACAATTCTCAAGTCAATCCCGGTTATGAA
CCAACACCGGAACACCTTAGATTCCCATCGACCGGTAGTTACACAAACAA
CGGAGCCATGGGAACTTACGGACAACCAGAAACAGACAACGTATACAATC
CACATGCGCAAATGGGAAACTCGCCAAACACACAAGATAACGCTAATACG
TTTACTAATACAACGACTAACCCAACCGCCACAGATGAAGTCCCTCTGCA
TTAAATGTTCAAGTTGGTTGTATTAGCTGTTTTGTTCGCTTCCCAATGTT
TGCTGGTGGAAGCAAGCTGTGGATGTCAAAATAACGGCCAATGTGGTGCA
GATTTCACGTGTACTTGTCCTGATGGTTTCTATGGCCCCATTTGCAACCA
ATACGCAGAGACATACACCATCCGCTACGAATCAACACCCAGTGGTATCC
GAACATCTGACATCACCAACGGCTTCAAATTGAAACTCTTaagccaaaaa
atcacaaaatctttcTCAGTCGGTCTCGGCAATTTATACGCTGTGACATT
CTATCAAGCACTTACTGAAGCCGAGCGTCGTAAATTACAATCTGTAGCGT
CAGATGTTGCGGCGGGAACTACGGTAGCCGAGATCAGTGATTTCAATGAA
TGCGTCGACGGAAAACAATCGTGCTACAATGGATTAAAATGTATCAATAC
ACAATATTCCTTCAGATGTGGATGCCCAGAAGGTTATGAAGTCAAAGAAA
ACAGATGTATACAAGAGGTTGACAGTAATGCCAAGACAGTCATTTACGTT
TGGGCTGGTGCAGTTGGTGCAGTTATCTTATTTACACTTGGTTGTCTCAT
GTTCTACAGACacagaaaaatcgaaaaaggAAAGAAAAGCGCTTTTGAAT
ACCAAAAGAAGATGGCTAACCGTGGACAATTGACACCAACAAACTTGAGT
GAATACGAAGGACAACACGGTCGCAGAGGCTCCCCATCCGCATCTGTGGT
TGATGGTCACACCCGATACTCGATGGGTGATATCGGTTCCGATGTTTACT
CTTACAATGCGAATTACAATCAAGATCCAAGTGCTTATTATGGTACACAA
ACTAGATTATCAATCCCTATGGACAATTCTCAAGTCAATCCCGGTTATGA
ACCAACACCGGAACACCTTAGATTCCCATCGACCGGTAGTTACACAAACA
ACGGAGCCATGGGAACTTACGGACAACCAGAAACAGACAACGTATACAAT
CCACATGCGCAAATGGGAAACTCGCCAAACACACAAGATAACGCTAATAC
GTTTACTAATACAACGACTAACCCAACCGCCACAGATGAAGTCCCTCTGC
ATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1147MSTRG.1147Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1147.1.p1MSTRG.1147.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1147.1.p1.exon1MSTRG.1147.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1147.1.p1.exon2MSTRG.1147.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1147.1.p1.exon3MSTRG.1147.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1147.1.p1.exon4MSTRG.1147.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1147.1.p1.exon5MSTRG.1147.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:2999607..3003671 +