MSTRG.11461.1.p1 (mRNA) -

Overview
NameMSTRG.11461.1.p1
Unique NameMSTRG.11461.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:382346..386014+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11461.1.p1 ID=MSTRG.11461.1.p1|Name=MSTRG.11461.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3669bp|location=Sequence derived from alignment at sc0000083_pilon:382346..386014+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGGCCTGGTAACAAACTCCAAATTTCAGGACTATAAATTCTCCAATTTT
TACCAATGATAAACACTTCAAAACTCAAGTTTagaagaagctagaagaga
agagaagaaCAACAAAATGGTAAGATTTAACTTTTACAATTTCCATAAGG
TTTATACAGTCGACTTTCGCTtactcgaacttctattattcgaatctttc
tttaattcgaactccCAGTCAAGGAGGAAGGCTATaaaaaatactttctg
taattcgaatctctctgttattcgaacaaataagattccccgttggagtt
cgaattagcgagagttaactgtaaaatagtttcttcattttccttgataG
AGTCAATGAATGATTCTTATTTCTTATGTGAGTTATAACACTTTCAGAAC
ATTTCATTGCAAATGTAGCGTCTGTAAGGATCAGAACAGACTTAAGAGTA
TCTAGAACATGCTTTCTACTTCTTGAGATAACCACTTTTTATTTAacatt
tcttattttctttagaATTCCGTCATTTTAATCCTTTTGGTGGCTGTAGC
CGTTCaggtaatatttttttcctaaTCCACCAAACTTTTCcttgttgaaa
aaaaactgaTGACTAGAATAATTTCTCTTACAGAAGGCATGCTCTCATTT
CTGGTACCAAATAAAAAGAGCTTTTTCTCGTTATTGAATTCATATACctt
attacttcgaataaacatcCAGTGCATTGACAATAACTAAGTAAATTCGA
ACACAGCCCCCTTGCAGCTTTTACCAAGGGTTGATAAATCTATGATAATG
TTGGCCTAGAAAATAGCTTGCTACCTTCGGTAGAGCAAAATGATATCTCT
ATGCCCCTTTCGCCCTCAAATTTGAAGGGAAATTGGATATTCATCGAAAA
GGGAacgtatcgaataatagagcgctGTTTATgggagtttcttgttgaca
gtgaCAACAAGAACTTTGAATTGAAAAGCGTCAACTTCATCGTTGTAATT
TTTCACACTATCGACCAATAATCCCAATTTCTTTCACACTGTTTTCACCA
GGCAAAACATTCAGCGGATTTGAATTTCCATGAAGGTGGGAAAGCTTACA
AAGAACGAATTACGTTTGATGATGAAAGCAATACTACTGAATTTCATGTG
CCAAAACATGCCGCTGTACCATTCGATGTTGATTACTTGATTGACCATAA
CACTGTAAGTataacccagctgacacacaacgttgttccaacgttcattt
aacattatatggacgttgtgaatgttaaataaacgttgaaacaacgttgt
gtgccagctgagaaCCATTTTCTTGGAAACCATCCCATCGTGTAAAAACC
ATGGCACCACCAttagacttttttgaagccttcaaatgttcttcattttt
ttagttgtaagcctaaaaaagttcttaacatgttcttattttttgggaat
ttttgtccattttcctaagaaattgggtgtttagattcttaaagccttaa
aatgttcttaacttgttcttaacattttgaccatcaaagccttatgttct
tatatagtttgttcttataaaaaaacgtgtactaccCATGAGGGTGAGAT
AGCAAAAAAGAGTTTCACTCTTAAAGCGAACGGACTTTGATTTAATTAAA
AGAGTTAGAAACTGGTTTGGACAAATTTGAAACCAAAATTGCCATGCAAT
CTTCAATTATTTCTGGCTCAAACATACCCGTTATATGTAACCCCCTTTAT
TGTTTTTACCCTAGCACTACGAGTTCCGAAAGATTGAAGGCGAGAAGAGA
TGTTACGCCAGAAAGATGTCCAAGGATGAAGAATTCACCAACAAAGATAT
GGAAACGGTCACTCAAGTGGTAAGTATCTACCACccagctggcaaacaac
gttgtttcaacattcatctaacgctacatggacgttgtgaacattagata
aacgttgaaacaacgttgtgtgcctgctggGAAACTATAAAACTACCCTT
TCTGTTCtgaaaatgctaaaatacttaGCAGTTCATAAATTTTCCACCTT
CAGTCATTCTCTGAATTAACGCGTTCAACTTAATTTCACCTAATTCTCGA
AGAGATGATCAGATGTTTTGACATGCAAAAACCTTCCATCGTCCAGAGTA
AACTGTAAACACAATATAAAAAccatatttcataatttcaattttttttg
tagagTGGAGGAAACTTCCCAACAAACCGTTACTACGTTGAAAACCGAAT
TTTAGTTCCATCCCATGAACTAGATCGAACAAGATTCTCAAACAAAGTCG
GTCAATTTTGTGGAGATTACCCAATTATCCTTGAAAAGGAAATGTCTAGC
CTAGCTGAAGTTGAAAAGCACATGGAAAGAACTCAAGGTAACCATTTATT
TACAGTTGagactctttaactcgaacctctataactttaatgtctcttta
actcgaataaattttatCTATCGTCCCTACAGCTAACAATACCGGGTAGT
CGATAAAAACTGTCCATaaagttcaaattttgacgtagcGTGTTATATTG
ATTCTATTGACTTTTGGTGCAGACAAtcttactctataactcgaaatttc
cttaactctaACAAAGTTGTGTTCCCCAtgcgggttcgagttatggagac
tccaatgTACAACCATGCCAATAGAAAAAGTCTCAAGAGTTATCCTTCTA
AATTCATTGCCGTTTGAGAAAGAAATCGAGTCCAAAATTTATAGCCAATA
ATGTAAAAATCTAGTCTTGCAATATGGCTAATCGTATGGAATGGGAAGGT
TTGGGAAGATATTTTGTTTCAAGGCTTTGGAAGTATTTTTACTTTCATCC
TATGTACATGGAATGGGTTTTCTATCTATTGCTATATTTAAAGTCGATTC
gtgctaattcgaacttctattaatCGATATTttcgtatcgaatagtagaa
tgtcaGATTAAAGAGCTTCAACTAATTCTTACTTCCCGCAAAAAAGGAAA
CCCCTAATAAAAATGATAACCAAAGATTACTTTGTTTGTATTTTAGCATC
GCGAGCCAAACGTCAAATATTCAATGACTGGGCAAGTTGCAACGATTCCA
CCATGATATTCTGCCCAAAAGCTACTGCTAAATGTCGCTTCATTACACGA
TCATGTATTTACTGGTTAAAGTGTAAGAGAATCACTGTTAACAACCAGTT
GGCTTTGAATTGTTATAAACCTGGCGAACCAAACCATAaatataattcga
atgtttgttGTGATTTTACTTGCATTTAAATTATGAATTTTTCACCTTTG
TATCTCATAATTCTCGCTGGGAgccatttgttttgattttgaaatttcaa
gtaCTACCTCTGTTCTaaaaaaaGATCTgtttgaaaatcctttggaaATC
ATATAGTATTTTTGCAATGACTTTGAATGTTGGAAGTGAGACTTTATATG
AGTATAGGATCAAGAAGAGAATTTAGAATTTGGggaaatgtttaattttt
tgcaaaGAAAGAGGTTACCATTGGGTATGAGCGAGACAAAGGTGTAACAT
TATAACCAGGAATAGTTATCTTTGGTAAAATATATGCATTGAAACAAAAG
ACAAGTACAAAATTCTGTCCATTATTTTCCTACTTTGGTCTTCATATGAA
CTCCCATAAATACAAGATT

Coding sequence (CDS) from alignment at sc0000083_pilon:382346..386014+

>MSTRG.11461.1.p1 ID=MSTRG.11461.1.p1|Name=MSTRG.11461.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0000083_pilon:382346..386014+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGaATTCCGTCATTTTAATCCTTTTGGTGGCTGTAGCCGTTCagGCAAA
ACATTCAGCGGATTTGAATTTCCATGAAGGTGGGAAAGCTTACAAAGAAC
GAATTACGTTTGATGATGAAAGCAATACTACTGAATTTCATGTGCCAAAA
CATGCCGCTGTACCATTCGATGTTGATTACTTGATTGACCATAACACTCA
CTACGAGTTCCGAAAGATTGAAGGCGAGAAGAGATGTTACGCCAGAAAGA
TGTCCAAGGATGAAGAATTCACCAACAAAGATATGGAAACGGTCACTCAA
GTGagTGGAGGAAACTTCCCAACAAACCGTTACTACGTTGAAAACCGAAT
TTTAGTTCCATCCCATGAACTAGATCGAACAAGATTCTCAAACAAAGTCG
GTCAATTTTGTGGAGATTACCCAATTATCCTTGAAAAGGAAATGTCTAGC
CTAGCTGAAGTTGAAAAGCACATGGAAAGAACTCAAGCATCGCGAGCCAA
ACGTCAAATATTCAATGACTGGGCAAGTTGCAACGATTCCACCATGATAT
TCTGCCCAAAAGCTACTGCTAAATGTCGCTTCATTACACGATCATGTATT
TACTGGTTAAAGTGTAAGAGAATCACTGTTAACAACCAGTTGGCTTTGAA
TTGTTATAAACCTGGCGAACCAAACCATAaatataattcgaatgtttgtt
GTGATTTTACTTGCATTTAAATGaATTCCGTCATTTTAATCCTTTTGGTG
GCTGTAGCCGTTCagGCAAAACATTCAGCGGATTTGAATTTCCATGAAGG
TGGGAAAGCTTACAAAGAACGAATTACGTTTGATGATGAAAGCAATACTA
CTGAATTTCATGTGCCAAAACATGCCGCTGTACCATTCGATGTTGATTAC
TTGATTGACCATAACACTCACTACGAGTTCCGAAAGATTGAAGGCGAGAA
GAGATGTTACGCCAGAAAGATGTCCAAGGATGAAGAATTCACCAACAAAG
ATATGGAAACGGTCACTCAAGTGagTGGAGGAAACTTCCCAACAAACCGT
TACTACGTTGAAAACCGAATTTTAGTTCCATCCCATGAACTAGATCGAAC
AAGATTCTCAAACAAAGTCGGTCAATTTTGTGGAGATTACCCAATTATCC
TTGAAAAGGAAATGTCTAGCCTAGCTGAAGTTGAAAAGCACATGGAAAGA
ACTCAAGCATCGCGAGCCAAACGTCAAATATTCAATGACTGGGCAAGTTG
CAACGATTCCACCATGATATTCTGCCCAAAAGCTACTGCTAAATGTCGCT
TCATTACACGATCATGTATTTACTGGTTAAAGTGTAAGAGAATCACTGTT
AACAACCAGTTGGCTTTGAATTGTTATAAACCTGGCGAACCAAACCATAa
atataattcgaatgtttgttGTGATTTTACTTGCATTTAAATGaATTCCG
TCATTTTAATCCTTTTGGTGGCTGTAGCCGTTCagGCAAAACATTCAGCG
GATTTGAATTTCCATGAAGGTGGGAAAGCTTACAAAGAACGAATTACGTT
TGATGATGAAAGCAATACTACTGAATTTCATGTGCCAAAACATGCCGCTG
TACCATTCGATGTTGATTACTTGATTGACCATAACACTCACTACGAGTTC
CGAAAGATTGAAGGCGAGAAGAGATGTTACGCCAGAAAGATGTCCAAGGA
TGAAGAATTCACCAACAAAGATATGGAAACGGTCACTCAAGTGagTGGAG
GAAACTTCCCAACAAACCGTTACTACGTTGAAAACCGAATTTTAGTTCCA
TCCCATGAACTAGATCGAACAAGATTCTCAAACAAAGTCGGTCAATTTTG
TGGAGATTACCCAATTATCCTTGAAAAGGAAATGTCTAGCCTAGCTGAAG
TTGAAAAGCACATGGAAAGAACTCAAGCATCGCGAGCCAAACGTCAAATA
TTCAATGACTGGGCAAGTTGCAACGATTCCACCATGATATTCTGCCCAAA
AGCTACTGCTAAATGTCGCTTCATTACACGATCATGTATTTACTGGTTAA
AGTGTAAGAGAATCACTGTTAACAACCAGTTGGCTTTGAATTGTTATAAA
CCTGGCGAACCAAACCATAaatataattcgaatgtttgttGTGATTTTAC
TTGCATTTAAATGaATTCCGTCATTTTAATCCTTTTGGTGGCTGTAGCCG
TTCagGCAAAACATTCAGCGGATTTGAATTTCCATGAAGGTGGGAAAGCT
TACAAAGAACGAATTACGTTTGATGATGAAAGCAATACTACTGAATTTCA
TGTGCCAAAACATGCCGCTGTACCATTCGATGTTGATTACTTGATTGACC
ATAACACTCACTACGAGTTCCGAAAGATTGAAGGCGAGAAGAGATGTTAC
GCCAGAAAGATGTCCAAGGATGAAGAATTCACCAACAAAGATATGGAAAC
GGTCACTCAAGTGagTGGAGGAAACTTCCCAACAAACCGTTACTACGTTG
AAAACCGAATTTTAGTTCCATCCCATGAACTAGATCGAACAAGATTCTCA
AACAAAGTCGGTCAATTTTGTGGAGATTACCCAATTATCCTTGAAAAGGA
AATGTCTAGCCTAGCTGAAGTTGAAAAGCACATGGAAAGAACTCAAGCAT
CGCGAGCCAAACGTCAAATATTCAATGACTGGGCAAGTTGCAACGATTCC
ACCATGATATTCTGCCCAAAAGCTACTGCTAAATGTCGCTTCATTACACG
ATCATGTATTTACTGGTTAAAGTGTAAGAGAATCACTGTTAACAACCAGT
TGGCTTTGAATTGTTATAAACCTGGCGAACCAAACCATAaatataattcg
aatgtttgttGTGATTTTACTTGCATTTAAATGaATTCCGTCATTTTAAT
CCTTTTGGTGGCTGTAGCCGTTCagGCAAAACATTCAGCGGATTTGAATT
TCCATGAAGGTGGGAAAGCTTACAAAGAACGAATTACGTTTGATGATGAA
AGCAATACTACTGAATTTCATGTGCCAAAACATGCCGCTGTACCATTCGA
TGTTGATTACTTGATTGACCATAACACTCACTACGAGTTCCGAAAGATTG
AAGGCGAGAAGAGATGTTACGCCAGAAAGATGTCCAAGGATGAAGAATTC
ACCAACAAAGATATGGAAACGGTCACTCAAGTGagTGGAGGAAACTTCCC
AACAAACCGTTACTACGTTGAAAACCGAATTTTAGTTCCATCCCATGAAC
TAGATCGAACAAGATTCTCAAACAAAGTCGGTCAATTTTGTGGAGATTAC
CCAATTATCCTTGAAAAGGAAATGTCTAGCCTAGCTGAAGTTGAAAAGCA
CATGGAAAGAACTCAAGCATCGCGAGCCAAACGTCAAATATTCAATGACT
GGGCAAGTTGCAACGATTCCACCATGATATTCTGCCCAAAAGCTACTGCT
AAATGTCGCTTCATTACACGATCATGTATTTACTGGTTAAAGTGTAAGAG
AATCACTGTTAACAACCAGTTGGCTTTGAATTGTTATAAACCTGGCGAAC
CAAACCATAaatataattcgaatgtttgttGTGATTTTACTTGCATTTAA
ATGaATTCCGTCATTTTAATCCTTTTGGTGGCTGTAGCCGTTCagGCAAA
ACATTCAGCGGATTTGAATTTCCATGAAGGTGGGAAAGCTTACAAAGAAC
GAATTACGTTTGATGATGAAAGCAATACTACTGAATTTCATGTGCCAAAA
CATGCCGCTGTACCATTCGATGTTGATTACTTGATTGACCATAACACTCA
CTACGAGTTCCGAAAGATTGAAGGCGAGAAGAGATGTTACGCCAGAAAGA
TGTCCAAGGATGAAGAATTCACCAACAAAGATATGGAAACGGTCACTCAA
GTGagTGGAGGAAACTTCCCAACAAACCGTTACTACGTTGAAAACCGAAT
TTTAGTTCCATCCCATGAACTAGATCGAACAAGATTCTCAAACAAAGTCG
GTCAATTTTGTGGAGATTACCCAATTATCCTTGAAAAGGAAATGTCTAGC
CTAGCTGAAGTTGAAAAGCACATGGAAAGAACTCAAGCATCGCGAGCCAA
ACGTCAAATATTCAATGACTGGGCAAGTTGCAACGATTCCACCATGATAT
TCTGCCCAAAAGCTACTGCTAAATGTCGCTTCATTACACGATCATGTATT
TACTGGTTAAAGTGTAAGAGAATCACTGTTAACAACCAGTTGGCTTTGAA
TTGTTATAAACCTGGCGAACCAAACCATAaatataattcgaatgtttgtt
GTGATTTTACTTGCATTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11461MSTRG.11461Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11461.1.p1MSTRG.11461.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11461.1.p1.exon1MSTRG.11461.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11461.1.p1.exon2MSTRG.11461.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11461.1.p1.exon3MSTRG.11461.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11461.1.p1.exon4MSTRG.11461.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11461.1.p1.exon5MSTRG.11461.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11461.1.p1.exon6MSTRG.11461.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:382346..386014 +