MSTRG.11460.4.p1 (mRNA) -

Overview
NameMSTRG.11460.4.p1
Unique NameMSTRG.11460.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:371797..373301-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11460.4.p1 ID=MSTRG.11460.4.p1|Name=MSTRG.11460.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1505bp|location=Sequence derived from alignment at sc0000083_pilon:371797..373301- (Clytia hemisphaerica_ch_hm2_pilon)
GAACTACATATTAATGGAAATGAGAATCGTTTAAAAAAAGGGAGGGATCA
GGCATCCTTTCATATTAACTCAACTATTCGATTTCTTTCTAGGTACCGAC
ATGGATACGAAACGAACTTGAAGATGGTATACCAGTCTTCGAAGAAGAAA
TAAGTCCAGCTCCCCCTCCGGAAGCACCCCTTTATATTGATTCCGGAAAC
GCCAGTGACGATGAAGAAAACCCTGCATCGCCTGCCGGAAGTCCCGCCAA
AAGACCATTCCCGTTCAACCGGACCAAATCTTATGACACTTTATCACGTC
GTGGGAGCATGACATTATTGGGCCGTGACCCTAACTTCAACATTATCCCG
AAATTAAAGAAACAAAATCCGATGTTAAAACGGGTTGAAGAAACGGATGA
TTTGGGGAAAACGGAAACTCGGATTATCGATGGAGTTGCTGTGACCGTTT
CTACAACAGAAATATCAGAAGATATTAGTACCAGTCCAAATTTAAATGCC
AAAAGAGTTGGCTCTGCAAAGGTAACTTTTTAGGACAGATATAAGCTGTT
TCAATTAGGCTGATAATTTAGCCTGGATAAGCCTGAGGGTTCTAACTTAA
AACAGTACACCAAAAATATTTCGATCGAAACTAAGATGATTCAAATCAGA
GGTCTATTGACCCAGTAAGTACAAAAACGATTGAGAAACTCCCGTCTAAT
GTCAGTAAAGGACAATGTTCTATCAGTTAACTTGGTAATAACCCAAATAT
TTTTACGAACCTTAATAATTTACTTTACAGAAAGCATCACCTAAACCCGT
CATTGGGAATGTCTCACCTGAAGTTAAACGCAAAATGAAAAGTATGTCTG
CTGATGCTAAGAAAAGAGAAAAACAGAAAAAGCCAGCCGATGGAGATATC
ACAGCTCGTTCTTCGTCTGCCGTGGAGTACACCCCAGTTGAAGATATTTA
TTCAGAGGTGAGTACACATGTAAAATTAAGTTTCGAAAAATGTTATACTA
TAGGCTAGATAAAATACCAAATGCTAATTATTGAAACTAACAAGTCTTTT
ACATTTTCTTAAAGGGTGGAATGAACATCTGAAAAACTAGATCTTACTAG
GAAGGGCCCTTTATAAATGTCTCAATTATTTTTTCGTTGGATCTGTAGTT
TTAAATTTCGAATTGTTGCTTTTCGAAATAAGAAAAAAATGCTTGCGCGG
CTGAAATGAAGACGGAATAACCACCTCCCCGTGTGATGCGCGCCGACTTT
CAGATGAGAGAAACACAATTTTTGAAAAAAACATCGTATATATTTTTTTT
CAACCTGTGCAATCTTTATTAATCAAACATATTTACTTTATTTAGGAATT
GGCAGCCAAATTACATCAAGAGAAAAAATCGGAACAACCTCAAAGGTACG
AAACCCCCTGGGAGTACTACCCTTGCATTCCGATGGGGTGCCGCTGAGGT
CTGAAAAATGGACCCTGTGTGGGACAATTTTTTTGAAAATTTTGCCAAAT
TTGCA

Coding sequence (CDS) from alignment at sc0000083_pilon:371797..373301-

>MSTRG.11460.4.p1 ID=MSTRG.11460.4.p1|Name=MSTRG.11460.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1467bp|location=Sequence derived from alignment at sc0000083_pilon:371797..373301- (Clytia hemisphaerica_ch_hm2_pilon)
CCAAATTACATCAAGAGAAAAAATCGGAACAACCTCAAAGGTACGAAACC
CCCTGGGAGTACTACCCTTGCATTCCGATGGGGTGCCGCTGAGGTCTGAA
AAGCATCACCTAAACCCGTCATTGGGAATGTCTCACCTGAAGTTAAACGC
AAAATGAAAAGTATGTCTGCTGATGCTAAGAAAAGAGAAAAACAGAAAAA
GCCAGCCGATGGAGATATCACAGCTCGTTCTTCGTCTGCCGTGGAGTACA
CCCCAGTTGAAGATATTTATTCAGAGATGACATTATTGGGCCGTGACCCT
AACTTCAACATTATCCCGAAATTAAAGAAACAAAATCCGATGTTAAAACG
GGTTGAAGAAACGGATGATTTGGGGAAAACGGAAACTCGGATTATCGATG
GAGTTGCTGTGACCGTTTCTACAACAGAAATATCAGAAGATATTAGTACC
AGTCCAAATTTAAATGCCAAAAGAGTTGGCTCTGCAAAGCCAAATTACAT
CAAGAGAAAAAATCGGAACAACCTCAAAGGTACGAAACCCCCTGGGAGTA
CTACCCTTGCATTCCGATGGGGTGCCGCTGAGGTCTGAAAAGCATCACCT
AAACCCGTCATTGGGAATGTCTCACCTGAAGTTAAACGCAAAATGAAAAG
TATGTCTGCTGATGCTAAGAAAAGAGAAAAACAGAAAAAGCCAGCCGATG
GAGATATCACAGCTCGTTCTTCGTCTGCCGTGGAGTACACCCCAGTTGAA
GATATTTATTCAGAGATGACATTATTGGGCCGTGACCCTAACTTCAACAT
TATCCCGAAATTAAAGAAACAAAATCCGATGTTAAAACGGGTTGAAGAAA
CGGATGATTTGGGGAAAACGGAAACTCGGATTATCGATGGAGTTGCTGTG
ACCGTTTCTACAACAGAAATATCAGAAGATATTAGTACCAGTCCAAATTT
AAATGCCAAAAGAGTTGGCTCTGCAAAGCCAAATTACATCAAGAGAAAAA
ATCGGAACAACCTCAAAGGTACGAAACCCCCTGGGAGTACTACCCTTGCA
TTCCGATGGGGTGCCGCTGAGGTCTGAAAAGCATCACCTAAACCCGTCAT
TGGGAATGTCTCACCTGAAGTTAAACGCAAAATGAAAAGTATGTCTGCTG
ATGCTAAGAAAAGAGAAAAACAGAAAAAGCCAGCCGATGGAGATATCACA
GCTCGTTCTTCGTCTGCCGTGGAGTACACCCCAGTTGAAGATATTTATTC
AGAGATGACATTATTGGGCCGTGACCCTAACTTCAACATTATCCCGAAAT
TAAAGAAACAAAATCCGATGTTAAAACGGGTTGAAGAAACGGATGATTTG
GGGAAAACGGAAACTCGGATTATCGATGGAGTTGCTGTGACCGTTTCTAC
AACAGAAATATCAGAAGATATTAGTACCAGTCCAAATTTAAATGCCAAAA
GAGTTGGCTCTGCAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11460MSTRG.11460Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11460.4.p1MSTRG.11460.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11460.4.p1.exon3MSTRG.11460.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11460.4.p1.exon2MSTRG.11460.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11460.4.p1.exon1MSTRG.11460.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:371797..373301 -