MSTRG.11410.4.p1 (mRNA) -

Overview
NameMSTRG.11410.4.p1
Unique NameMSTRG.11410.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000082_pilon:1149652..1155350-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11410.4.p1 ID=MSTRG.11410.4.p1|Name=MSTRG.11410.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5699bp|location=Sequence derived from alignment at sc0000082_pilon:1149652..1155350- (Clytia hemisphaerica_ch_hm2_pilon)
CTGAAAATAGTATTAGCAGTATGTCCGTAGCGGATGTATCATTATTGTTA
CAAACATAAAAATACCATGGATAGGTATTTATTAAGCCTTGCGGTTGGGT
TTTAAGTTTTATCTTTGCTTTGTTTCATTATACTACCGAATCCATTTAAA
TTTCTCTTGTGGTAGAATTCTGAAATTTGAAAATAGTATTAGCTACAATA
TTTATGTTGATAGGTATGGCTGAATTGAGGGTTTTGTGCTTATTTATTCA
ATTATTTTTGCTGGAATTTTCTTTGAAAGTTTTTGGACAATCAGAATTTT
GTGACCAGTTACCTGCTCCCTACCTATGCTGTAAGTAATAATCATATCAA
ACTATGATGACATATTTTCTCTCGTGAGTATTTACTTTCGAGAAAAGGGC
TGAAAATCGCAAAAGCAGTTTGTACGCTTATATTATTTTGGTATGGGTTC
TTTTAACTCTTTTAAAGACTTTTCTTGCTTTTAAGGACCTGAAATAGCCA
GAGCGTTAGACGTGATGTCTAACCTTCATTCAACAAGTTTTCACTACACT
CATAGAAACGCCTGATTGCAAACAACTCTCTTTACGGCTCGATTTATCGA
ATCCAATCAGATTCTAGATAATAAAATATTTTCATTGCCTTGGGAATGCG
AAAAGTCTTCGCTAAAGGCGAGCATGTTTTTAACGAGTTTGTTTACAAGT
AAGCTAATACTGTAGTATATATCTTTTTAAAGTCAAAATTATATTATTAG
CTTACAACCTTGGCTCGTTGAGTTTCAAGCCCAAATGGCTAGAGGCGAGA
CTCTTAGATGGGAAATGAAACCACTTATTTCCCATCCAGAACGCCTGCGC
GTAGCTTTTACACAAACGCGGGATCGAAACTAAAATCTATCGCTATATTT
CAAAAAATGTAGTCTTCCAAAACAAAGACACCGCTAGATACAATTCGTCA
GGCTTGAAACTCAATGCCTTGGCTAGACTTAGCCTGGGAATCCAAGCTCA
TAATTTTAGAAAAAACAAAAAATACCTCACCTCACAAGTTCTTTCACGAG
CTCTAAAGACTTTCAAAACTACTAAAAATAACATCGAAACATCAGCCACA
TATATTTAGAATTCCAGATGATCTGGAGTTTTTACAACGTCGGCTAAAGA
TTTCTTCCTGTGTATTTTACCGAACCAGTTCTATATTCGCGATATTATGC
TGTACACCCCCACAAAATACATGTACCCTCTAGGTCCCGAAGGTCCCGAG
GTCCCGAAGGTCCCAAGGTCCCGAGATGAAAATATACTATATACCCCCAC
AATGTTCATGTATTCTTTAGGTCCGCAAGGTCCCGAGGTCCCGATATGAA
AATCCCACCCATAAAATGCTTGTACCCCTAGGTCCCGAGGTGAGAAGGTA
CCAAATACAGCCAAAAATATACATACACCCCCTTGGTCCCAAAGGTCCCA
AGGTCCCAAGATGACAATATACCAAATAAATCCCAAATAATACATACACC
CCTTAAGTCTCAAAGGTTCCAAGGTCCCGAGATGACAATATACCAAATAC
ACCCCAAAATAACGCTTGGATTTCCAGGCTAGGCTAGACCTTCAGAGTTT
CGTGAGTCAAACTTAGGCGTTGAATATGAATTCAAAGTTGATATCTTCTA
CGACCAACCTTCTCTTCTCTGAATCGTGACTTGTTTTTTTACAGTAGAAC
AAACACCGCCAACACCAGGATCAGAACTTTATTACGTAGATCGCTCGAGT
GACAGTAGAATGCCCAAAACGCATCAAGCAGCACAAGGTTCCTGTGGGAA
CATGTTTCCAGGCACTGGAAATTTATTCATACCAGAAACAGCTGCTGAAA
ATGCTGCAGTTCGCGAGCAACTACCAGTGTATGATAATTTTCATTCAAAT
CATATTGAAATCTCAATTTCTTTTTTCTAAAAAAACGATAAAACTGTACT
GCACATCTTCAGATTTTCACCAGATATTGATTTATATTTGATGCTATTTT
TAGAGTTTGAGCTCTTTGAGCATCCGTATAAATTTCGATTCTATATTCTT
TATTATAAAACTTAGAACCTCATCAGATGTTAAGGCACTTAAATTCGATT
AACATTGATTGTAATTGATCTTCTTTTACTAGAAGGTACTGGTTGTTTCA
ATGTTCATCTCACGTTATTTTTTTAAACATTTTCAACATTAAACCTGCGA
GAGGGGGTACCTATATACAAGTGCTGAAAGTATGAGTATATGTGATTTCA
GTCTCACTAAGTGTTGGAAAAAAAGTAAAATTTTTGTCCCTTTTTGTCCC
TGGAAAGATCGAAATTTGGTCAAACTCACAATTTTTTCTCCTTTTTAGTC
CCGCTAACGGTCCGAGCCTCGAAATTCAGGCGGCACACCCCCGTTAGCTC
GCAACCAATGCCCCCCCCCCCGGGACATTAGATTGAAGTTGAAACAACGT
TTTGTACCAGTTAGTTGGGTTGTTTGAATAATTCTTTCAATATAATTTTA
GCTTTGAACCTGCTTTTTGGATTGGTATGAGAGCTCCCTCTTTGAGTTCA
CCAGTCATGCAAGATCAGTTCAAATGGAGTGATGGTTCTGATGTCACTTT
TGACAATTGGGCTAATAATAACCCAGTAGACGATATTAATAAAGAATGTG
TTGTTCTTGTTAATGCTGCTGGTTGGAAGAATGTTGATTGTGATGACTTA
AACTTGTATATATGCAGGTCAGTGAGCAAATTCTCATATTTCATTTTCTC
CGTGCGTAAAAGTCTTTCTCATCAGGATAGGTGCACTTAGTTGTTCTTAT
TTTAAAGTTTTGATTTTCAGACTTTGCATTGCATGCGTAGTAACGTTTTA
GTGAAACCGTCGTGTAATGGTAACGCATTCTGCTAAGGTGATAAGGTCAT
GAATTCAAGACTTCTTAGAAATGTATATGTTCTAGTGATAATCCATAAAC
ATCGAAGGGGTCACTAGAGGAAATACAGGAAAACCTACGCAAAAAGAACG
TCAAAGATTACGTCTATGTCTATATGACTACCTATTGTCTAGACCCCATT
TCCCTTACATATTTTCTGTATTATCTTGTTTTAAAAGGTTTACACCAGCG
CCAGCACCACCACCACCACCACCACCTACTGAGACACTGTTACGCGAATT
AAATAATTTACTGGATAATGTTATCATATTCGAAGCTCAGCCAGATTCAG
AACTTGATTATCAAGAAGCACATGACTTTTGTAAAGCTCGAAATGCTGTT
TTGGGAAAAATCTTGAATGTTCAAGAAAACAAAATTGTCAGTAACTCACT
GGCCTCTTTTGGGTAAGTACTTCTACTGAATTCCCTATCATGTCAATTAA
GGAACTCTTTACAGGTACAATAGGACCTTACGCTGAAAATTAACTTAATT
TTTTTACTTAACTTAATTAATGAATTTTAAAAAGTTACCCTGAGCCTTTA
CGAACCTTTCCCGTGAAATTTGATTCTTCATACAAGCCCCCTTCTGCCCT
TAGTGACAACCAGGCCTTAATTTAAGAATGACGATTCGCCATTTTCAGTA
ATTAAGATTTAAGATGAGTTTATAATGGCTCTATTGTATCCATCAGATGA
AAATTTGTTGTCGTTTTTCCAGGTGATGTGAGGAAGACTCTTTAGCCGTC
CCCTGGTTTTTTCCCACTATGATCTTTCTGTCGAACATTAAAAAATTGAG
ATTATTTCAGCTACAATCAGTTCCAAAATATTTTGCATAAAAGGGAAATT
CCCCATGAAATCTTATAAGCACAAACGATTTTAGGTGCTCCAAATTAGGT
TGCAATGGTAAAGTTTTAACGCTAGACTTAGGATCCCAGCATCCAAAAGT
TGAAAAATGGTCCGATAGGCCTTGAAATATAGCCTAGAAACCAATATATT
CCTCCAAGATCGATGAAATTAAGTTGAAGGCCCGAAATTGACATTCTCGC
TCAAACTTCAATTTTCGAAAATGGTAAAATAGCCAAAAATTACCAATTAT
TCATGGCACTGATTGTAGTTTCGTTTGAATTTCTAAAATTAGTGTCTACA
TGGTGATGAAATTTTAAAACAAGTCAAAAATAGAAGAAAGAAGTATTTTG
GTACATCCACCAGCTCATACATTTCGGGGTACTTTCGTTTTCGAGAGATC
TGACTATCCCAGCCTCATCCCGGGTGGTAGTGAAATTTTGAGAGAATCTG
CTCTTTAATTCTCTTCAAAAGATAAAAAAAAAGAAGAAATTTATTCATAG
TCATTTTTTCAAAATTTAGCTAATACTGAACATTTTGAATCCGATTAATC
CAGTTACAGATCGCCGTGTTCTTATAAGGGACGATTTCGGTCCATTGCTT
GAAGCTCTTTCCTTTCTTTCCTTTTCTACCCAGGAAAAATGTTTCCAATA
AAAATATCTAGTTAGTTAGAATATTTGATGATTTCATTTTACTTTCTCTT
TTGCAGTACAATGTGGATAGGACTTTTGAACGATTTAGAAAACGCGAAAT
TTAAATGGAAAGACGGAAATAAATCGGCATATCGAAGATGGTGTTCTGGC
CAACAGCCAACAAACATGGCAGGATGTGTCGTGTTTAGAATGGATAATTT
AGTGAATGGTCAAGGGTGTTTTGATGTTGTTTCATGTGATATGGATTTCT
TTTTTTATTGTGAACGAAGATCGAATGATGCTGATAACTTCAATTCACTC
ACCCAAATTTTACGACAGGGATTAGAGGAAATTTCTCAAAGTTGCAAATC
GTGCCGTGCAGCTAATTAGTTCATCATGATTTTGATCATGAATCCGACAA
TATCTCGTCAACATTTTTTGACACTAAAACGCAGAATTTCAACTGTGTGT
ATAATCTCTTTTGTTACTCCAATAATTTTTTTATGACTTACTTATAGTAC
ACTTTTTTTTATACATAAGAACAATTTTATAAGAGCAATGAGGCTCAGAA
TCGCCAAAAAATAAGAACAATTTAAGAATAATGTTGAGCCTGAAATTACT
CAAATTCAAGCATTTTAGGAGTTTAAGTTTATTTACACTTTATCAATAAG
AACAGGACACGAAAAAATTTGAGGGTTGAAATGCCAAAAGAAATAAGATC
AACCAAGCCTCAGAAAAGTTTTACCTGGTTTTTATAAAAAAGTGTATGCA
AGAGTTGAGAGCCTGTGTCATAAGAATATAATAATTTGAATCTGATTTTC
TCTAAAATGATTCCATACTGTCGTGTTTCAAAGGCATTCTGAACCCACCA
CCAAATTAAATCTTGGATTCGTGCAGACACCCGAGGCTACATAATCTCAG
GAAACGATTTATCCCCTTTCCCATTTCCCCATTTTTGCATGATTGGAGTC
AATATCAAACTATATTTGCTCCTCAGAAGGCTATTTGCCACATTACTCCT
TTTGTTTAACCCTTTTAACTACTTTCAAACCCCCTATTTAATTACCTTCC
TGATAAGCCTTCCCTTATGTTTTATTTTACGACTTTGTTATTTTGAAATG
CTAAGGCTAACGCCATTAACCCCAACCCATATTGCCATATTATATCAGAC
AATTAACATTTATTTTAGTATTAGGGACCTAGTATATATAGAGGTCGAAT
TTTCTCAAGTAGACAAGTGAAGTTATTTCAATTTAGTTTCACAATGTAAG
TGTAACATTTTTTTGTATCTTTAGGAGTTGGTCGTGTTAAAGATTATTT

Coding sequence (CDS) from alignment at sc0000082_pilon:1149652..1155350-

>MSTRG.11410.4.p1 ID=MSTRG.11410.4.p1|Name=MSTRG.11410.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3492bp|location=Sequence derived from alignment at sc0000082_pilon:1149652..1155350- (Clytia hemisphaerica_ch_hm2_pilon)
TACAATGTGGATAGGACTTTTGAACGATTTAGAAAACGCGAAATTTAAAT
GGAAAGACGGAAATAAATCGGCATATCGAAGATGGTGTTCTGGCCAACAG
CCAACAAACATGGCAGGATGTGTCGTGTTTAGAATGGATAATTTAGTGAA
TGGTCAAGGGTGTTTTGATGTTGTTTCATGTGATATGGATTTCTTTTTTT
ATTGTGAACGAAGATCGAATGATGCTGATAACTTCAATTCACTCACCCAA
ATTTTACGACAGGGATTAGAGGAAATTTCTCAAAGTTGCAAATCGTGCCG
TGCAGCTAATTAGGTTTACACCAGCGCCAGCACCACCACCACCACCACCA
CCTACTGAGACACTGTTACGCGAATTAAATAATTTACTGGATAATGTTAT
CATATTCGAAGCTCAGCCAGATTCAGAACTTGATTATCAAGAAGCACATG
ACTTTTGTAAAGCTCGAAATGCTGTTTTGGGAAAAATCTTGAATGTTCAA
GAAAACAAAATTGTCAGTAACTCACTGGCCTCTTTTGGCTTTGAACCTGC
TTTTTGGATTGGTATGAGAGCTCCCTCTTTGAGTTCACCAGTCATGCAAG
ATCAGTTCAAATGGAGTGATGGTTCTGATGTCACTTTTGACAATTGGGCT
AATAATAACCCAGTAGACGATATTAATAAAGAATGTGTTGTTCTTGTTAA
TGCTGCTGGTTGGAAGAATGTTGATTGTGATGACTTAAACTTGTATATAT
GCAGATGCCCAAAACGCATCAAGCAGCACAAGGTTCCTGTGGGAACATGT
TTCCAGGCACTGGAAATTTATTCATACCAGAAACAGCTGCTGAAAATGCT
GCAGTTCGCGAGCAACTACCAGTTACAATGTGGATAGGACTTTTGAACGA
TTTAGAAAACGCGAAATTTAAATGGAAAGACGGAAATAAATCGGCATATC
GAAGATGGTGTTCTGGCCAACAGCCAACAAACATGGCAGGATGTGTCGTG
TTTAGAATGGATAATTTAGTGAATGGTCAAGGGTGTTTTGATGTTGTTTC
ATGTGATATGGATTTCTTTTTTTATTGTGAACGAAGATCGAATGATGCTG
ATAACTTCAATTCACTCACCCAAATTTTACGACAGGGATTAGAGGAAATT
TCTCAAAGTTGCAAATCGTGCCGTGCAGCTAATTAGGTTTACACCAGCGC
CAGCACCACCACCACCACCACCACCTACTGAGACACTGTTACGCGAATTA
AATAATTTACTGGATAATGTTATCATATTCGAAGCTCAGCCAGATTCAGA
ACTTGATTATCAAGAAGCACATGACTTTTGTAAAGCTCGAAATGCTGTTT
TGGGAAAAATCTTGAATGTTCAAGAAAACAAAATTGTCAGTAACTCACTG
GCCTCTTTTGGCTTTGAACCTGCTTTTTGGATTGGTATGAGAGCTCCCTC
TTTGAGTTCACCAGTCATGCAAGATCAGTTCAAATGGAGTGATGGTTCTG
ATGTCACTTTTGACAATTGGGCTAATAATAACCCAGTAGACGATATTAAT
AAAGAATGTGTTGTTCTTGTTAATGCTGCTGGTTGGAAGAATGTTGATTG
TGATGACTTAAACTTGTATATATGCAGATGCCCAAAACGCATCAAGCAGC
ACAAGGTTCCTGTGGGAACATGTTTCCAGGCACTGGAAATTTATTCATAC
CAGAAACAGCTGCTGAAAATGCTGCAGTTCGCGAGCAACTACCAGTTACA
ATGTGGATAGGACTTTTGAACGATTTAGAAAACGCGAAATTTAAATGGAA
AGACGGAAATAAATCGGCATATCGAAGATGGTGTTCTGGCCAACAGCCAA
CAAACATGGCAGGATGTGTCGTGTTTAGAATGGATAATTTAGTGAATGGT
CAAGGGTGTTTTGATGTTGTTTCATGTGATATGGATTTCTTTTTTTATTG
TGAACGAAGATCGAATGATGCTGATAACTTCAATTCACTCACCCAAATTT
TACGACAGGGATTAGAGGAAATTTCTCAAAGTTGCAAATCGTGCCGTGCA
GCTAATTAGGTTTACACCAGCGCCAGCACCACCACCACCACCACCACCTA
CTGAGACACTGTTACGCGAATTAAATAATTTACTGGATAATGTTATCATA
TTCGAAGCTCAGCCAGATTCAGAACTTGATTATCAAGAAGCACATGACTT
TTGTAAAGCTCGAAATGCTGTTTTGGGAAAAATCTTGAATGTTCAAGAAA
ACAAAATTGTCAGTAACTCACTGGCCTCTTTTGGCTTTGAACCTGCTTTT
TGGATTGGTATGAGAGCTCCCTCTTTGAGTTCACCAGTCATGCAAGATCA
GTTCAAATGGAGTGATGGTTCTGATGTCACTTTTGACAATTGGGCTAATA
ATAACCCAGTAGACGATATTAATAAAGAATGTGTTGTTCTTGTTAATGCT
GCTGGTTGGAAGAATGTTGATTGTGATGACTTAAACTTGTATATATGCAG
ATGCCCAAAACGCATCAAGCAGCACAAGGTTCCTGTGGGAACATGTTTCC
AGGCACTGGAAATTTATTCATACCAGAAACAGCTGCTGAAAATGCTGCAG
TTCGCGAGCAACTACCAGTTACAATGTGGATAGGACTTTTGAACGATTTA
GAAAACGCGAAATTTAAATGGAAAGACGGAAATAAATCGGCATATCGAAG
ATGGTGTTCTGGCCAACAGCCAACAAACATGGCAGGATGTGTCGTGTTTA
GAATGGATAATTTAGTGAATGGTCAAGGGTGTTTTGATGTTGTTTCATGT
GATATGGATTTCTTTTTTTATTGTGAACGAAGATCGAATGATGCTGATAA
CTTCAATTCACTCACCCAAATTTTACGACAGGGATTAGAGGAAATTTCTC
AAAGTTGCAAATCGTGCCGTGCAGCTAATTAGGTTTACACCAGCGCCAGC
ACCACCACCACCACCACCACCTACTGAGACACTGTTACGCGAATTAAATA
ATTTACTGGATAATGTTATCATATTCGAAGCTCAGCCAGATTCAGAACTT
GATTATCAAGAAGCACATGACTTTTGTAAAGCTCGAAATGCTGTTTTGGG
AAAAATCTTGAATGTTCAAGAAAACAAAATTGTCAGTAACTCACTGGCCT
CTTTTGGCTTTGAACCTGCTTTTTGGATTGGTATGAGAGCTCCCTCTTTG
AGTTCACCAGTCATGCAAGATCAGTTCAAATGGAGTGATGGTTCTGATGT
CACTTTTGACAATTGGGCTAATAATAACCCAGTAGACGATATTAATAAAG
AATGTGTTGTTCTTGTTAATGCTGCTGGTTGGAAGAATGTTGATTGTGAT
GACTTAAACTTGTATATATGCAGATGCCCAAAACGCATCAAGCAGCACAA
GGTTCCTGTGGGAACATGTTTCCAGGCACTGGAAATTTATTCATACCAGA
AACAGCTGCTGAAAATGCTGCAGTTCGCGAGCAACTACCAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11410MSTRG.11410Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11410.4.p1MSTRG.11410.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11410.4.p1.exon5MSTRG.11410.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11410.4.p1.exon4MSTRG.11410.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11410.4.p1.exon3MSTRG.11410.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11410.4.p1.exon2MSTRG.11410.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11410.4.p1.exon1MSTRG.11410.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082_pilongenomesc0000082_pilon:1149652..1155350 -