MSTRG.11400.1.p1 (mRNA) -

Overview
NameMSTRG.11400.1.p1
Unique NameMSTRG.11400.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000082_pilon:1001067..1003045-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11400.1.p1 ID=MSTRG.11400.1.p1|Name=MSTRG.11400.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1979bp|location=Sequence derived from alignment at sc0000082_pilon:1001067..1003045- (Clytia hemisphaerica_ch_hm2_pilon)
ACCGTTGTTTTTTATGAGAATTACCTCATCCCGGACGAAAAATCAGGTGT
TTTACCGTCACCGTGGCTCTTGCAAAATACCGTTTCCCGAACACTTTTTA
TCGTTTTTACCGCTTCCCGGCCCTAAATTAGGCCTTATCCCGAATACCGC
AAGATCGTACGCCCCCCACACTATACGGTTGCAAATCTTTCTCCGAAGTT
TCGTTCTCGACATTCTGCTGTTAGACTATTAGCCATTGCAAAAAGCACCC
TTGTGAAGCAATACGGTGTAAATAGCATTTTGAAACCAATTGTCGATGAC
TTGAAAACCCTTTACAATGGGGTAGACTTGACATGTGGAAATGTTGTTGT
GAAAGTATTCGGAAAAGTTTTTGTCTGCACAGGGGACACACTTGGACAAC
ATTTGTGGGCAGGATTTAAGGAAGGAGTTGGAGTTTCATTCCAAAAATGC
CGGCATTGTTACATCGACTTTGATACGATGCAAACTACATTTGAGGAAGA
TAGTGAAACATTGCGAAACAAAGCAAGTTATGAAAGAGAAGCAGATATGG
TCGAAAATTCAGTAAATGTAGCAGTTCGAGAAACATTTAGTTTGCTTTTT
GGCATTAATAATAAAACAATTTTATCATCTCTTCCTGAATACGACGTAAG
CAAACAAATGCCGCAAGATATAATGCACACTATAGCAGAGGGCGTGTTAC
AGTATGAGACAAGGTTGGTTTTACTTAACTTGATCAAGGCCAATCAAATA
ACATTAGAGCAATTAAACAGTGCCATAGCGAGTCATAACTATGGCTACAC
AGAAACTTCGGATAAACCTCCTCCACTCAAGGAAACAGTTTTTACCAAGG
ATGGCTATAAACTCAAATATAATGCCTCTCAGGCTAGACTTTTCCTTCGG
CTTTTGCCATTTTATTTAGCCCCTTTTGTTGATGCTGATGACGTTTATTA
CGTCTTTTTAATTAATTTGTTGGAGATTGTGCAAATGATTTATAGCCCAG
TTATAATGAAAATTACAGTACCTGCTTTAAAAAAGATGATTTCAGATCAC
CTCAAACAATTTAAACAATTATTTCCAAACAGCAACATAATTCCGAAGCA
GCACTACACGATTCACATCCCAAGTCAAATTCTTCTTTTGGGACCAGCAA
TAAGATCGTCCTGCTACAGTTTTGAAGCGACCCATAAGTATTTTAAGAAA
ATTGCCCAAAAGCAAAACTCTAAAAACATTTGTCTATCACTTGCAAAGAG
ATACCAACGGCTTAATTGCGTTGACTTCGATTTAAAACAAGACACACCAC
AGAATCACCCACTTTTTTCCAAGTCAATGGAGCATGGTGTAGTGCGATCG
GTAGGAGTTGAGGCTAAGAACAACCTCCGTTTGGCTTTTGATAAATTCTC
CCTTTTGCCAGGAGTAGAACTTAAAGACGTTTACACTCTTAGTTGGACAG
TTTTACATGGTACAAAGTATGCTATTGGTGGCCACGTGATGATTTCAGTG
AGTGAAAATCCAATCAAACCAATATTCGGTAAAATTACAAGGATATGGCT
TGTTAGTGGATACGTTTATTTTGAATTACAATATTTAAAGACTGTACAGT
TTGAACAAAATTTTCAGGCATATTTGGTTGAAAACACAAACCACGTTGTT
TATTGTTGCTATGAAGGATTAGTGGACTACCTCTTAGGGGGTCTAAAACT
TAATTTTAAGCAGTAACACCTAATTATGTCATCTGGCCACCTGTCAGATG
ACGTCATCAGGTGGCTGGGCAAAAAATTATTTTTTTCGAAGTTTTCAAAA
TCTGATGATTCCATCGGAAAGAACATGAAATTCTGATGAAAATTCTCAAC
CAGAATAAGGGCTTTCAAACATCTTTTTTTCACTCAATTTTTTGAATTTT
TTTTGAAAAAGCCGTGGATTATTTTCCTAAAATAAATTCATGTGGAAAGG
TGTTGCCGCGTAAAGACTCGCGTAAGGCC

Coding sequence (CDS) from alignment at sc0000082_pilon:1001067..1003045-

>MSTRG.11400.1.p1 ID=MSTRG.11400.1.p1|Name=MSTRG.11400.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1239bp|location=Sequence derived from alignment at sc0000082_pilon:1001067..1003045- (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAAACTACATTTGAGGAAGATAGTGAAACATTGCGAAACAAAGCAAG
TTATGAAAGAGAAGCAGATATGGTCGAAAATTCAGTAAATGTAGCAGTTC
GAGAAACATTTAGTTTGCTTTTTGGCATTAATAATAAAACAATTTTATCA
TCTCTTCCTGAATACGACGTAAGCAAACAAATGCCGCAAGATATAATGCA
CACTATAGCAGAGGGCGTGTTACAGTATGAGACAAGGTTGGTTTTACTTA
ACTTGATCAAGGCCAATCAAATAACATTAGAGCAATTAAACAGTGCCATA
GCGAGTCATAACTATGGCTACACAGAAACTTCGGATAAACCTCCTCCACT
CAAGGAAACAGTTTTTACCAAGGATGGCTATAAACTCAAATATAATGCCT
CTCAGGCTAGACTTTTCCTTCGGCTTTTGCCATTTTATTTAGCCCCTTTT
GTTGATGCTGATGACGTTTATTACGTCTTTTTAATTAATTTGTTGGAGAT
TGTGCAAATGATTTATAGCCCAGTTATAATGAAAATTACAGTACCTGCTT
TAAAAAAGATGATTTCAGATCACCTCAAACAATTTAAACAATTATTTCCA
AACAGCAACATAATTCCGAAGCAGCACTACACGATTCACATCCCAAGTCA
AATTCTTCTTTTGGGACCAGCAATAAGATCGTCCTGCTACAGTTTTGAAG
CGACCCATAAGTATTTTAAGAAAATTGCCCAAAAGCAAAACTCTAAAAAC
ATTTGTCTATCACTTGCAAAGAGATACCAACGGCTTAATTGCGTTGACTT
CGATTTAAAACAAGACACACCACAGAATCACCCACTTTTTTCCAAGTCAA
TGGAGCATGGTGTAGTGCGATCGGTAGGAGTTGAGGCTAAGAACAACCTC
CGTTTGGCTTTTGATAAATTCTCCCTTTTGCCAGGAGTAGAACTTAAAGA
CGTTTACACTCTTAGTTGGACAGTTTTACATGGTACAAAGTATGCTATTG
GTGGCCACGTGATGATTTCAGTGAGTGAAAATCCAATCAAACCAATATTC
GGTAAAATTACAAGGATATGGCTTGTTAGTGGATACGTTTATTTTGAATT
ACAATATTTAAAGACTGTACAGTTTGAACAAAATTTTCAGGCATATTTGG
TTGAAAACACAAACCACGTTGTTTATTGTTGCTATGAAGGATTAGTGGAC
TACCTCTTAGGGGGTCTAAAACTTAATTTTAAGCAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11400MSTRG.11400Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11400.1.p1.exon1MSTRG.11400.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11400.1.p1MSTRG.11400.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082_pilongenomesc0000082_pilon:1001067..1003045 -