MSTRG.11385.1.p1 (mRNA) -

Overview
NameMSTRG.11385.1.p1
Unique NameMSTRG.11385.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000082_pilon:669957..674371+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11385.1.p1 ID=MSTRG.11385.1.p1|Name=MSTRG.11385.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4415bp|location=Sequence derived from alignment at sc0000082_pilon:669957..674371+ (Clytia hemisphaerica_ch_hm2_pilon)
CGGGTCCAAAGGGACTGCAGTGCGGTCccctgggactgaaagggttaact
caaatcaaatgactttggaggctTGGTGAAATGAgtggccgaattgccat
cccatgttttgtcagatagtcccaagttagagtagtAGACGGTATAATTG
ATCCAAAAAGGTGTACAAactaaaagttaaaatttggcatcaaattattg
acatagcaacactttttttagatttgagTATTTCTCAGAGTAGCTATTTA
AATGGACCTTTTGAACTTTTAacagaaatttttaatttctgaaaatattt
tcagctttagaGACCTTGAATCAGCCATTTTACAGTTTACcaattgcaaa
atttaatcatttAGGGCTATTAACACAGAAAATTTTGCTCACTGTTATAA
TAAAACTCAATATATACTTTCAGTTTTTTAAACATAACGTTCAATTGACT
TAACCTAttttatacatcaaaatttaagttgacTTTCTTCTGGTATaatt
gaaaaagatttgagaGGAAGTTCTTATCTGCAATATGCTGACAAATCTAC
AGACAAAGCTACAGACTTTGATTCTTATTTGGcactcaattttaaaattt
ccaaaattgccAACACACTAAAGCTCTGAGGTCAGGTAAATTTTAGAGGG
AAAGGTTTAGATTTAGAGGAAGGTTTAAAAATCATCTATAAGGTTTAGAT
TACAGCATTTTGCCACATGCACATGGCACATCAAAGGCCCACTATCATTC
CTCGGTGATGGGAATCAGCCCTCATCTTTAAAGCTCTAGGGTTGACAGTG
GCAAATTCCCCATTAGAATATCAGATATACTTTATTTCAGATGAATAGAT
ATCTGGGTGAACCTTAAATCCAGGGACTTTTCAAGGACGTTGCATGCTGT
AATAATCGAGCTTTTTACTGATTGAAGTAATTAATCATGTAATATTGATT
TGATAGTTTGGTTACAAGAATCAGTCAAAAGATTGATTGATATGGCCTGG
AAAACAAAGCCAGCAAATGActacaattgaatcaattagATTATGATTAA
AACCACCAAAATATTCCAATACTAACTAACTGCAACAAAACTGTGCTGCT
ACAAGAATAAAACATTTTGGTTTTATAGTGATTTTATATGCAAGTCTTCC
TGACTAAAATTGACTCTACTTTTTTAGTGAAATATGGAATAAAAATAGAT
GAGTACTGAATTCAATATGTCCCTGATCAAATTGAAAGGATGAAAAAGAA
CAATGAAAAAGATAAGAATCAGTATATATGGCGTCTTTTCTGAAAAAGAC
CTTGAAACAAAAGGTTCAAAAGTGGGCCATTTTTGGATTGGGATTTTACC
TAGTTGGTCTTCAAGGCTTTCATGCAGCAGGCCAGTTCTTTGGAAACAGA
AAAAATTGGCCTGTCACTGTTGCAGCTTTTGGGGCATTTGGGTTTCTGTT
GTATAATCAGGTATGTATGGAGAACTTTATTCTTTTTGGATTTGAGACAA
TTCACAGCCTACTAAAATTAAAACTCAGGAAAATAACTGTTAAACAAATT
GATAAGAATTAACAAAATGACCAAACAGCTTTAAATTCTGCTCCAAAAAA
CTTAGTAGTCTGTACTATACCTAaaatggattaattttcgcgtgaactga
tttttgcgagacgagaattaaaagattttgctgATTAATTGTCACGATTC
aagggttttcaaaatttttgcgtggattaaattttgcaaaaatggccaaa
attctcaaaaaacagaattaattaacacaaaaattaatccacttaggTAA
TCGAGGGGGGAAAGATATAGCTTAAAGCAATAACTGGTTGGGAATAATGT
TGTTCAGATTGATGTAATGTAAGCTTTGTAGAATCTtctaaaacattgaa
aatgaagatggaaatgaaaaaaaaaagaatgaagatttttcagctcaacc
aaaaacttttattttatacttttctgaaaatttgaaacctcTGaaaaaaa
GTCCACATGTGCAATAAATTGCTAAAAATGGTCGAAATGGACCTTTAACA
AGAAAATATAACTTTGAAAAGTTGtatgaaaaatctgaataaCATGTTTG
AAATCAGtggttcaaaattttagaaaagtattataaatttatttggcagg
gtagaaaaatttttcatacgGTCATACAAAGTACAAATTGGTACTTGTTG
CCTCTCTGCTTAATTCTGAATATAGATAATATTATAGGTTAGTGGAGTAA
TCCATTGAGAAAGAGTGGTGCCTTCCCTACCTTTTGGAATATGTATATTG
AAAGAAGGGCTTTTGGGTCCCCTTGATTGATTCATAATTGCTTGTCTTAT
TCTGCAGGCAAGAATTTTAAACTAGTTTCTAAGATTATTGGTTTACTGTC
TGATTTCTTACCAGATGAAAGCAATCCTTGTGACTTTGGGCTGTTTTGTC
TTGGTCCTGGTTGTTTTTGTCATTGCAGTTGGACTAATGTTACCAGAGCA
AGGCTATGATGGAGAATTTCATTGGGACCCTAGCGACGAGGatcttgatg
attttgatgaaaattagatTCTCTATTTACTAGTAAATACATCAACCAGT
TTTATTGTGGAGATTTCTGAAAAGCTAAAATATATACTGATTCACAATTG
AAAATAAGAATAGAAATGTTAGCTTAAAATTGCTATGGTAACATTGAATT
ACTCTTTAATAGAGAATTTAGCAAGGCTTGGGCAGCGACATTTTGATTTA
CATTTAATTTTATAACAGAAGCTGTATACAAGGAGAGACTTTTGGAGACT
TCTATATCATCACTGCAACACCTTAATGTAAATTTTCTTGTATATGCTGG
GAGGCTCAGCCACACTACAGTAGGAGGATCAGCCAGATACAATAATGTTC
AATACAGTGATAACAACTTACTACCCTTTTAATGTACATATAAAATATGT
AATTTTTACAGTAAAACTCTCCATTTGATTATTAACACTCTAGAGCTTCT
AATAAAGTTACCTTACCCATTAAAATTAAGTGCCAGTtcctaaattttga
atttccgcCCCAAATAACAATATTTTGTTGCTTTCAGGGAAGCAGGCTTA
TTTAATCACTTTGTCCAAAACCCAGTACATAACTTATAAGAACCTGGCAA
TCTTATATTATTGAGCCCTTGCTAGTCTTGCTGGTCTTAATCCAGCTCaa
tcaataaaaattcatttattttgaagaaatcaCATTGTAGGTACACCAAA
AAATGTTTAGAGAAAAGATTTCCATTTTGAGTTTCCAATTTtggattttg
ttgtttttgccaCTAGTGGAATGCTCTCCAGGAGATCGTGATCCACACTT
TCAATTATGCTCTAGAAAATGTATTGTAAATTGCATCAATCAGCAGCACA
GCTTTCTGTCATGGGGATGTAAAGGAGAATGTGAATATGATTGTATGTTT
AGAATAACTGATGAAAGAACAAAACTTGGCCTTGATATACTTCAATACTA
tggaaaatggccattttatAGGCTTTTCATTATTCAAGAACCAGCATCGT
TCATATTTTCTGTCCTCAATCTGGTGTCTCAAATTATTGGATGGATTcac
tattcaaaaaatgttgacagCAGCTTCAAGTTTTATGGACTTGCCAAAGT
GCAATCTTTTATCAATAGTGTTGCATGGACATGTGCTATTATATTTCATA
CACGAGACACTTATTGGACTGAAAAAATGGATTATTTTAGTGCAGCCGCA
GTCATTGGGGTCTCACTTTTCACCTGTTTTTCACACATCATTGGAGATAT
GGAATCATTTGCAACAAAATTTATTGGAGCACTAATATTGTCTGTTTTCT
CTTTCCACATTTACTATATGgcttttattcattttgattATGGATATAAT
ATGAAATTCCTTGTATCAAATGGTATTATTAATATCACTGTATGGTTTAT
ATGGTCTTggataaatagaaaaaaacgacCAGTTGGCAAATGTGTATTGG
TAATGGGAGGCACCTTACTACTAGCATCTTTAGAAGTTTTCGATTTTCCT
CCTATATTTTGGATACTGGATGGACATGCACTATGGCACTTTGGAACTAT
TCCTATACCTTTTCTATGGTTCAGTTTTTTGACTGAGAATGCTTTATTTG
AAACATCAAAATCTTCCTtagattgattgaaaaattgtttttttagaatt
agTTTTCTTCTTAGTTTGTCATCATACTGTACAAATTATAACGTGTcact
aaattaattttttgaaagtacAGCCTTGGCAAAAGATAAAAGTCAAGAAT
AATCAAAGTTTTAATATCAATCTCAAAGACAAAATTGattctgaatattt
ttttaactttgataATATTATTAATCCTTTACTTTTCTACTTAACTATTA
GACattgaaataaat

Coding sequence (CDS) from alignment at sc0000082_pilon:669957..674371+

>MSTRG.11385.1.p1 ID=MSTRG.11385.1.p1|Name=MSTRG.11385.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000082_pilon:669957..674371+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTAGAGAAAAGATTTCCATTTTGAGTTTCCAATTTtggattttgtt
gtttttgccaCTAGTGGAATGCTCTCCAGGAGATCGTGATCCACACTTTC
AATTATGCTCTAGAAAATGTATTGTAAATTGCATCAATCAGCAGCACAGC
TTTCTGTCATGGGGATGTAAAGGAGAATGTGAATATGATTGTATGTTTAG
AATAACTGATGAAAGAACAAAACTTGGCCTTGATATACTTCAATACTAtg
gaaaatggccattttatAGGCTTTTCATTATTCAAGAACCAGCATCGTTC
ATATTTTCTGTCCTCAATCTGGTGTCTCAAATTATTGGATGGATTcacta
ttcaaaaaatgttgacagCAGCTTCAAGTTTTATGGACTTGCCAAAGTGC
AATCTTTTATCAATAGTGTTGCATGGACATGTGCTATTATATTTCATACA
CGAGACACTTATTGGACTGAAAAAATGGATTATTTTAGTGCAGCCGCAGT
CATTGGGGTCTCACTTTTCACCTGTTTTTCACACATCATTGGAGATATGG
AATCATTTGCAACAAAATTTATTGGAGCACTAATATTGTCTGTTTTCTCT
TTCCACATTTACTATATGgcttttattcattttgattATGGATATAATAT
GAAATTCCTTGTATCAAATGGTATTATTAATATCACTGTATGGTTTATAT
GGTCTTggataaatagaaaaaaacgacCAGTTGGCAAATGTGTATTGGTA
ATGGGAGGCACCTTACTACTAGCATCTTTAGAAGTTTTCGATTTTCCTCC
TATATTTTGGATACTGGATGGACATGCACTATGGCACTTTGGAACTATTC
CTATACCTTTTCTATGGTTCAGTTTTTTGACTGAGAATGCTTTATTTGAA
ACATCAAAATCTTCCTtagattga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11385MSTRG.11385Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11385.1.p1.exon1MSTRG.11385.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11385.1.p1MSTRG.11385.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082_pilongenomesc0000082_pilon:669957..674371 +