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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000081_pilon:1335280..1339529+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11339.2.p1 ID=MSTRG.11339.2.p1|Name=MSTRG.11339.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4250bp|location=Sequence derived from alignment at sc0000081_pilon:1335280..1339529+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGAGAGGGAGAAAGAGGAATAACATCAACACAAACACAATGACCATTGA
CGAACATGGAATTCCCGAATGTTATTTAGGGTTGATTGAAACACTGAAAT
TACCGCCACTGCGACCGCCACCGCCCCAACAAGGAGGACGAAATGATTCT
AACGGTACCTTAGGTAGGTGTCTTTATCAGTGTTGCAATCAGTGAaataa
tatattggcaccaGCCTAAAATGTCACCGGATGGACTCACTTCTCTCTCG
CTGAAGCAGatatatcataaaaaaagaatgccTTAAGTGAAGGCTTCGGG
ACACgagatttttttttcgcgttggtgcaatgcaaaagacacgctgattt
cgtcccagggacaaaagtgagagaagcacaaatgttattaaaagagaAAT
GGTGTGGAGACACTAGAAAGCGTTCCTGGTTGAtaggatggagcatgttg
cattgtaccaacacgaaaaaaacttctcgtgtccccaagccttaagacTT
TCTGCTCAATGGGGTTTTGCTGAACTAACATCCCCCTGTATGTTTCTACT
CGAATGAGGAGTTTTCTTTTCAGCACATAGAAATCTGAGCGGTTGGGCGT
GGATCAGTGCAAAAAATCGACTGTCTAAAATTACTGGGATATCTACACAA
AATATCGACTCTTTCTATCTGTCGAAAATAAGGGCCGttcacatagtacg
tacgcaccacggggggtcttctcaaaagcgtatgcttgcgtataGCGGGa
agggaggggtcaaaggaaaatgtacgtacgcagaaaaaattttttcatag
cccttttttgcttgtttttttgtcgacttttacacttcttatacgcatca
aggaaaagaaaaagtttcttaataaacattgagtttcatgtatgaaataa
aggtctgaagcaaacgatttgaattagaaattttcttcaaccgagggagt
gggggtgaatgaaaaagtgcGTACTCAcaagggggtatagccatttgcgt
actcttgcgtacaggggggagggggtactttaTTTTCGAccttttagtgc
gtacgtactatgtggacggtcCCATAGTGTTACAGAACCATATTTTCATA
AGACTTAAGCACattttacaaaacaaaaaccCAGTTCAATTCTGGTTATG
TTGTCAAGCCGGGTTCAATCTGCTAGTCGTCAGGAATTGAAACATACTTT
AATCGGTTTAACTTTTGTGAGATTAAATTTAGCGATCTAATTTTGCGAGT
Cacggttttgaaaaatttcgcgtggatttaatttcgcgaataagcctaaa
aacagctgaaaaataatcattttttgtcaaaaatcggACTTTGGACTGGT
TTCACCGCCGAAAatgtgattttaaaatttttatggtggatttaatttcg
cgagtcaggaactcacgcgttttcgcgagttttaatttcgcgaaaatgga
aaaattcgcgaaatctagtgaaagttaatccgattaaagtagacATTATT
TTCATTATCTGGGTCATTAATTTCGAATGTCTTGCATTTCACTTAGGTGG
AAATAGTATGACAGACGACCTTAACAACAGTTATTATGCGTACGGTATCG
GGCCGTTTTTATTCCTCTTCATTGTCCTATGGAACGGCCTTCTCATCTAC
AGTCTATTATCGAACCGACAAAAACGAAAACGAATCAGCATCACAAAAAG
ACTATTCATCTATCACTCATGCACCGATCTCATTACTGGATTAGTCGTGG
TTCCCATACAAATAACGGCTCACTTTCAGCATGGATACACGTGCTGGTAT
CTTAGCCTAGCTGTCATGTTTACAGTTTTCAGTCAATGTACTGGTGTTAG
TACCTTACTGACTGTTTCATGGTTAAGGTGGGTTATTTAAAGTATCTTAG
CCTAGCTGTCATGTTTACAGTTTTCAGTCAATGTACAGGTGTTAGTACCT
TGCTGACTGTTTCATGGTTAAGGTGGGTTAATTTAAAGCTAAACATTACT
GAAATCGTACACataggttgcaaaattaaaacaCTCCCTtatcacagacc
cagtgggattttatcagccagcgGGGGTATAGATAgtggaccaaaactcg
atggggattgatattcccatatttttttatgCCAGggcctgggggggggg
caaaattAGATGGGGTCGatattttgggcaatttttccagtgagaagggg
tccctgttggtctgtgagaagggggtgttattaTCTTAATGTTTCCAAAT
ACTACGATATCATCACAaaacactacacgtttttttataagaacatcaaa
attttttgaagccttcggatgttcttaactttttgggttttaagcttgaa
aatgttcttaaaatgttcttaatttcactattttgtgaccatttttacct
atTTTACTAAGAAATTGGCTTCTCATAGGCCCGGtaggattttatcagcc
agtgggggtataGATAGTGGACCAAAACTCATCTGGGATTGATATTCCAT
AtttttttATGCCTATATGAAGATATTTTGGGGAATATTTTCCAGTGAGA
AGGGGGTCCCAGTGGGAAAgtgagaagagggtgttatTATcttgttttag
agtctgcgaagccttacaatgttcttaacttgttcttaacattttggcca
tcgaagtcttatgttcttaaccctttccgtgccgatgtcgtatatatccg
acatgcaaattttcactctacttgccaatgtcggatatatccgacatcaa
atttttttacctaattgCCGAGGCCTTTAAAAAAGAGTGAGCTCTATTGC
CGAGAAATCAGCTTTTAGGCAAATGGTTTTCTtatttgccaatgtcgtat
atatccgacataaaaaaatccataatagtagtgaaagtatatattaagtg
ctcaaaagatttatttcaggtttattttagtctatcataaaatatatata
aaacaaaatgtcaaatacaaatgtcaaacattggcaaataggaataaaat
atccttgtcgtatatatacgacatgcggcaacacgagttaaaatttgcat
gtcgtatatatacgacatcggcaaatcaggttactaaaaaaaattacccc
tcggcaaatggattggggtacaaaaatAAGGTAACGGCACGCAAAGGGTT
AATagttattattaaaaaaaaaaacgagtatgacatgaaaaaaatcagaa
atttcttCTTGTATCACACACTCCAGGTACCTATCCATCACCAAACCATT
GTTGATCGTCAAAGCAACATGGGTACTACTAACAATCGGCCTCGAATTCA
TTCTCACATTGACAATCTCACTGtacacattttttgtttatctccGAAAA
TCCACAGCGCATATGATCGCTGCTAACTTCCTTGTACTGGTTATCTATCT
CTCATTAAGCAGTATTATACTCATCGGTTTTAACTTGAAATCTTTTACAT
CGTTGGGTCAACAGCAAAGGCGAATGTCGATGTATGATGATAATACACGT
AATAGCAAACGTAATAACAGGGCTGTTCTTACACTGGCTCTTATAACATC
ATGTTACTTGATTTGTACTGTACCTTACATAATATATTCCTGCATGTTGG
GAAGTTATTTATACTCGGAGAACGCtgaattattgaaatatttccGATAT
CTGGAATCGTTTATTTATGTCCAAGCTTTGTATTTATTGAACTGTGGATT
AACAGCCATGATTTATGTATGCAGGAATAAACGACACTTCTTGAAAAGAC
GAGTTACAACTCGGTCTAGGATCGGTCAACAGAAACTTTCAGTAGGACTT
AAACAAAGACGGCATCAAAATGAGAGCTCGGAGACAATTTCAAGTTCAAC
ATCGGctgtttgaaattatgaaaagacGAGTTACAACTCGGTCTAGGATC
AGCCAACAGAGACGTTCAGTAGGACTTAAACAAAGACGGAATCAAAATGC
GAGCTCGGAGACGCTTTCAAGTTCAACATCAGCTGTTTGAGATACAATTA
TGAAACTGATGAGTTATAACTCGGTCCTGGACCGTAAGATTCAAAGAAAA
ACGAGATCAAAATACGAGttgaaaaatggttaaaatccAAAGAATGGTCA
CCCATTGCATCTACTACGCCATCATGAATAGCTTCATCAAAATGCACGTT
CCGGTTTCAAATTCGACTTTGATTTCGACTGTTTAACCCCAAATACAAAT
AAACGATATCGgtttaacgtgaaaactcagatttgatctccgaatattgc
Coding sequence (CDS) from alignment at sc0000081_pilon:1335280..1339529+ >MSTRG.11339.2.p1 ID=MSTRG.11339.2.p1|Name=MSTRG.11339.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4524bp|location=Sequence derived from alignment at sc0000081_pilon:1335280..1339529+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGAGAGGGAGAAAGAGGAATAACATCAACACAAACACAATGACCATTGA
CGAACATGGAATTCCCGAATGTTATTTAGGGTTGATTGAAACACTGAAAT
TACCGCCACTGCGACCGCCACCGCCCCAACAAGGAGGACGAAATGATTCT
AACGGTACCTTAGGTGGAAATAGTATGACAGACGACCTTAACAACAGTTA
TTATGCGTACGGTATCGGGCCGTTTTTATTCCTCTTCATTGTCCTATGGA
ACGGCCTTCTCATCTACAGTCTATTATCGAACCGACAAAAACGAAAACGA
ATCAGCATCACAAAAAGACTATTCATCTATCACTCATGCACCGATCTCAT
TACTGGATTAGTCGTGGTTCCCATACAAATAACGGCTCACTTTCAGCATG
GATACACGTGCTGGTATCTTAGCCTAGCTGTCATGTTTACAGTTTTCAGT
CAATGTACTGGTGTTAGTACCTTGCTGACTGTTTCATGGTTAAGGTACCT
ATCCATCACCAAACCATTGTTGATCGTCAAAGCAACATGGGTACTACTAA
CAATCGGCCTCGAATTCATTCTCACATTGACAATCTCACTGtacacattt
tttgtttatctccGAAAATCCACAGCGCATATGATCGCTGCTAACTTCCT
TGTACTGGTTATCTATCTCTCATTAAGCAGTATTATACTCATCGGTTTTA
ACTTGAAATCTTTTACATCGTTGGGTCAACAGCAAAGGCGAATGTCGATG
TATGATGATAATACACGTAATAGCAAACGTAATAACAGGGCTGTTCTTAC
ACTGGCTCTTATAACATCATGTTACTTGATTTGTACTGTACCTTACATAA
TATATTCCTGCATGTTGGGAAGTTATTTATACTCGGAGAACGCtgaatta
ttgaaatatttccGATATCTGGAATCGTTTATTTATGTCCAAGCTTTGTA
TTTATTGAACTGTGGATTAACAGCCATGATTTATGTATGCAGGAATAAAC
GACACTTCTTGAAAAGACGAGTTACAACTCGGTCTAGGATCGGTCAACAG
AAACTTTCAGTAGGACTTAAACAAAGACGGCATCAAAATGAGAGCTCGGA
GACAATTTCAAGTTCAACATCGGctgtttgaCAGAGAGGGAGAAAGAGGA
ATAACATCAACACAAACACAATGACCATTGACGAACATGGAATTCCCGAA
TGTTATTTAGGGTTGATTGAAACACTGAAATTACCGCCACTGCGACCGCC
ACCGCCCCAACAAGGAGGACGAAATGATTCTAACGGTACCTTAGGTGGAA
ATAGTATGACAGACGACCTTAACAACAGTTATTATGCGTACGGTATCGGG
CCGTTTTTATTCCTCTTCATTGTCCTATGGAACGGCCTTCTCATCTACAG
TCTATTATCGAACCGACAAAAACGAAAACGAATCAGCATCACAAAAAGAC
TATTCATCTATCACTCATGCACCGATCTCATTACTGGATTAGTCGTGGTT
CCCATACAAATAACGGCTCACTTTCAGCATGGATACACGTGCTGGTATCT
TAGCCTAGCTGTCATGTTTACAGTTTTCAGTCAATGTACTGGTGTTAGTA
CCTTGCTGACTGTTTCATGGTTAAGGTACCTATCCATCACCAAACCATTG
TTGATCGTCAAAGCAACATGGGTACTACTAACAATCGGCCTCGAATTCAT
TCTCACATTGACAATCTCACTGtacacattttttgtttatctccGAAAAT
CCACAGCGCATATGATCGCTGCTAACTTCCTTGTACTGGTTATCTATCTC
TCATTAAGCAGTATTATACTCATCGGTTTTAACTTGAAATCTTTTACATC
GTTGGGTCAACAGCAAAGGCGAATGTCGATGTATGATGATAATACACGTA
ATAGCAAACGTAATAACAGGGCTGTTCTTACACTGGCTCTTATAACATCA
TGTTACTTGATTTGTACTGTACCTTACATAATATATTCCTGCATGTTGGG
AAGTTATTTATACTCGGAGAACGCtgaattattgaaatatttccGATATC
TGGAATCGTTTATTTATGTCCAAGCTTTGTATTTATTGAACTGTGGATTA
ACAGCCATGATTTATGTATGCAGGAATAAACGACACTTCTTGAAAAGACG
AGTTACAACTCGGTCTAGGATCGGTCAACAGAAACTTTCAGTAGGACTTA
AACAAAGACGGCATCAAAATGAGAGCTCGGAGACAATTTCAAGTTCAACA
TCGGctgtttgaCAGAGAGGGAGAAAGAGGAATAACATCAACACAAACAC
AATGACCATTGACGAACATGGAATTCCCGAATGTTATTTAGGGTTGATTG
AAACACTGAAATTACCGCCACTGCGACCGCCACCGCCCCAACAAGGAGGA
CGAAATGATTCTAACGGTACCTTAGGTGGAAATAGTATGACAGACGACCT
TAACAACAGTTATTATGCGTACGGTATCGGGCCGTTTTTATTCCTCTTCA
TTGTCCTATGGAACGGCCTTCTCATCTACAGTCTATTATCGAACCGACAA
AAACGAAAACGAATCAGCATCACAAAAAGACTATTCATCTATCACTCATG
CACCGATCTCATTACTGGATTAGTCGTGGTTCCCATACAAATAACGGCTC
ACTTTCAGCATGGATACACGTGCTGGTATCTTAGCCTAGCTGTCATGTTT
ACAGTTTTCAGTCAATGTACTGGTGTTAGTACCTTGCTGACTGTTTCATG
GTTAAGGTACCTATCCATCACCAAACCATTGTTGATCGTCAAAGCAACAT
GGGTACTACTAACAATCGGCCTCGAATTCATTCTCACATTGACAATCTCA
CTGtacacattttttgtttatctccGAAAATCCACAGCGCATATGATCGC
TGCTAACTTCCTTGTACTGGTTATCTATCTCTCATTAAGCAGTATTATAC
TCATCGGTTTTAACTTGAAATCTTTTACATCGTTGGGTCAACAGCAAAGG
CGAATGTCGATGTATGATGATAATACACGTAATAGCAAACGTAATAACAG
GGCTGTTCTTACACTGGCTCTTATAACATCATGTTACTTGATTTGTACTG
TACCTTACATAATATATTCCTGCATGTTGGGAAGTTATTTATACTCGGAG
AACGCtgaattattgaaatatttccGATATCTGGAATCGTTTATTTATGT
CCAAGCTTTGTATTTATTGAACTGTGGATTAACAGCCATGATTTATGTAT
GCAGGAATAAACGACACTTCTTGAAAAGACGAGTTACAACTCGGTCTAGG
ATCGGTCAACAGAAACTTTCAGTAGGACTTAAACAAAGACGGCATCAAAA
TGAGAGCTCGGAGACAATTTCAAGTTCAACATCGGctgtttgaCAGAGAG
GGAGAAAGAGGAATAACATCAACACAAACACAATGACCATTGACGAACAT
GGAATTCCCGAATGTTATTTAGGGTTGATTGAAACACTGAAATTACCGCC
ACTGCGACCGCCACCGCCCCAACAAGGAGGACGAAATGATTCTAACGGTA
CCTTAGGTGGAAATAGTATGACAGACGACCTTAACAACAGTTATTATGCG
TACGGTATCGGGCCGTTTTTATTCCTCTTCATTGTCCTATGGAACGGCCT
TCTCATCTACAGTCTATTATCGAACCGACAAAAACGAAAACGAATCAGCA
TCACAAAAAGACTATTCATCTATCACTCATGCACCGATCTCATTACTGGA
TTAGTCGTGGTTCCCATACAAATAACGGCTCACTTTCAGCATGGATACAC
GTGCTGGTATCTTAGCCTAGCTGTCATGTTTACAGTTTTCAGTCAATGTA
CTGGTGTTAGTACCTTGCTGACTGTTTCATGGTTAAGGTACCTATCCATC
ACCAAACCATTGTTGATCGTCAAAGCAACATGGGTACTACTAACAATCGG
CCTCGAATTCATTCTCACATTGACAATCTCACTGtacacattttttgttt
atctccGAAAATCCACAGCGCATATGATCGCTGCTAACTTCCTTGTACTG
GTTATCTATCTCTCATTAAGCAGTATTATACTCATCGGTTTTAACTTGAA
ATCTTTTACATCGTTGGGTCAACAGCAAAGGCGAATGTCGATGTATGATG
ATAATACACGTAATAGCAAACGTAATAACAGGGCTGTTCTTACACTGGCT
CTTATAACATCATGTTACTTGATTTGTACTGTACCTTACATAATATATTC
CTGCATGTTGGGAAGTTATTTATACTCGGAGAACGCtgaattattgaaat
atttccGATATCTGGAATCGTTTATTTATGTCCAAGCTTTGTATTTATTG
AACTGTGGATTAACAGCCATGATTTATGTATGCAGGAATAAACGACACTT
CTTGAAAAGACGAGTTACAACTCGGTCTAGGATCGGTCAACAGAAACTTT
CAGTAGGACTTAAACAAAGACGGCATCAAAATGAGAGCTCGGAGACAATT
TCAAGTTCAACATCGGctgtttga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081_pilon | genome | sc0000081_pilon:1335280..1339529 + |
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