MSTRG.11335.1.p1 (mRNA) -

Overview
NameMSTRG.11335.1.p1
Unique NameMSTRG.11335.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:1310700..1312807-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11335.1.p1 ID=MSTRG.11335.1.p1|Name=MSTRG.11335.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2108bp|location=Sequence derived from alignment at sc0000081_pilon:1310700..1312807- (Clytia hemisphaerica_ch_hm2_pilon)
AAGTTTTTCTACGCATGCGCGTAAGAGAGTGGAAACCAGTTCTCAACGTG
GAAAAGCTAACATTATCAAAGTATTTGTTAGATGATTTTGAAAACATTGA
TTTATTTTATCTAACTGAATGGTAAGTAAGAGTTTTTAACAAAAAGCTGA
GGACGTGATTTCTATCCGACAGACAGAAACGACAACATGAATAAAATCAG
GTATGTAAATTCAACTTCAATTTTTCTTATTTTTGTTAGGGTGGAGTCGT
TCACAATCCATGTAGCGTAGCGGGATAATATTAGTTTGTATTTAAACTAA
AGAGGTTTTTTAGACGTCTAAAACATGTCTTTTACATTTTTTATAAGAAC
ATTATAAATTTTTTAAAGCCTTCGGATGTCCTTAACTTTTTGAGTTTAAA
GCCTAAAAATGTTCTTAACTTATTTAGCCATCGAAGCCTTATGTTCTTAT
ATACACCCCCTTCTCACAGACCCAGTGAGACCCCTTCCCACCAGATAATT
TGGCCAAAATATCATCCCCGGTGGAAATTTGTTGTCCAACTTTTGTTTCC
ACTGAAAATAATCAAATAAACCAATCCTCACTGCAAAATATTCACTACTT
ATCCCATTCCCACTGAATTTTCTGACTTGAAAAGAAACAAAATTGAAATC
CCATGGCATAAAAAAAAAAATTTATGGAAATATTTATCCCCAGCGAGTTT
CAATCTGTTATTTTCATCCCCTGAAAAATTCCACCGGGTCTGTGAGAAGG
GGGTGTTTATATAGTTTCAACGTTCATTCAACGTTATATGGACGTTGCGA
ACGTTAGATAAACGTTGAAACAATGTTGTGTGCCAGCTGGGAATTGAGTA
AGAGCATAAGTAAAGCGGTCTTTTTCTTCTTTTCTAGCCTGGTTCTTGTA
GCTGTCATTCTATTGACTAGCCTTTACGGCACATCCGCTGATATTTGTTC
GATTAAAACGAGGACAGTCGATGATTGTCGAATGATTTGCAACAAATCGT
ATAATTGTGGATATTTCACTTGGGCCATCACATCAAAGACATGCTACTTA
AAGGTTGCCTCAATTTTTTAATTCTATTTTTCCCTTTTTATAATTCAAAA
ATTTTAAATGCAATTTTGGGGAAATAGTCTCTATCAGGGTCCAAACGTAG
TTGCGAGATGACGGATATGTCGGAGCCAAAGTTCGAAAATCGACCCTGAG
AGAGACTATTTCCCCAAAATTGCATTCACAAATTTTGAATTCTAGTCCGA
ATTTCCTTTGAGGGCGTCGATTTTTTATTTTTGGTAAATTTGGAACTCTT
AAAAGGACTCAATTGCTTTTTGTACACCTTCGAGGGACTTTTGAGAATGC
GAAAAAGGGACCCTTCTGGCTAGCACATACCAAACAATACCCCGGGGGAT
TGAAGGCGATGAAATATGTGGCACATAAAAGAAAAATTACCTTTCCTCTT
CATAGAGATATTGACCTGTTCTCATAGAGGTTTGGTCTGGATTGGGGTTT
TCCAGAAAATACAACATTTTTGGAAATTTACCCCCAGACATTGTGGATTT
TGACCCCCCCCCCCATACAACGGATCTAGCCCCCTGGACAAGCATCCATT
GACCCCCCCCCCCCGCCGACATTCAAAATCACCCCTAATTAGGGCCAATT
AGAGCAAGTTTAGCAGATTTTTCACTACCTCCTGGCGAAAATATCCAATA
TATCCTCCATCCCATATACAAAATTTTCTGGAAGAGCCCATTACAACAAA
TGCGCCATCGGAGCTAGTGTATTACAATCAGTGTCAAAATACTTGGCACA
AAAGGGAAATCCACCGGGAAGTTTTGAGACCACAATCGATTTGTAAGTGC
TACTTTAGGTAGGTTCGAAGGGTAGAGTTTTAACGCTAGACTTAAGACTT
GACAGAGTTTAAACGTAACTCTTTTTGTTTCTAGGGAAGACGAAAGCGCT
GGAGCCGACGTCCTCATAACGGAGTGATCTCAGGATCTAAAACATTTGAT
GAGAATATTGTTGGTATCGACTTCAACGGGGGTGATATGAGATCACCATG
CTAAAATCCTTACATCGTTTATTGGAAATATCCAACCGAATTTCAAGATA
AATAATTG

Coding sequence (CDS) from alignment at sc0000081_pilon:1310700..1312807-

>MSTRG.11335.1.p1 ID=MSTRG.11335.1.p1|Name=MSTRG.11335.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000081_pilon:1310700..1312807- (Clytia hemisphaerica_ch_hm2_pilon)
GGAAGACGAAAGCGCTGGAGCCGACGTCCTCATAACGGAGTGATCTCAGG
ATCTAAAACATTTGATGAGAATATTGTTGGTATCGACTTCAACGGGGGTG
ATATGAGATCACCATGCTAACCTGGTTCTTGTAGCTGTCATTCTATTGAC
TAGCCTTTACGGCACATCCGCTGATATTTGTTCGATTAAAACGAGGACAG
TCGATGATTGTCGAATGATTTGCAACAAATCGTATAATTGTGGATATTTC
ACTTGGGCCATCACATCAAAGACATGCTACTTAAAGATGAATAAAATCAG
GGAAGACGAAAGCGCTGGAGCCGACGTCCTCATAACGGAGTGATCTCAGG
ATCTAAAACATTTGATGAGAATATTGTTGGTATCGACTTCAACGGGGGTG
ATATGAGATCACCATGCTAACCTGGTTCTTGTAGCTGTCATTCTATTGAC
TAGCCTTTACGGCACATCCGCTGATATTTGTTCGATTAAAACGAGGACAG
TCGATGATTGTCGAATGATTTGCAACAAATCGTATAATTGTGGATATTTC
ACTTGGGCCATCACATCAAAGACATGCTACTTAAAGATGAATAAAATCAG
GGAAGACGAAAGCGCTGGAGCCGACGTCCTCATAACGGAGTGATCTCAGG
ATCTAAAACATTTGATGAGAATATTGTTGGTATCGACTTCAACGGGGGTG
ATATGAGATCACCATGCTAACCTGGTTCTTGTAGCTGTCATTCTATTGAC
TAGCCTTTACGGCACATCCGCTGATATTTGTTCGATTAAAACGAGGACAG
TCGATGATTGTCGAATGATTTGCAACAAATCGTATAATTGTGGATATTTC
ACTTGGGCCATCACATCAAAGACATGCTACTTAAAGATGAATAAAATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11335MSTRG.11335Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11335.1.p1MSTRG.11335.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11335.1.p1.exon3MSTRG.11335.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11335.1.p1.exon2MSTRG.11335.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11335.1.p1.exon1MSTRG.11335.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:1310700..1312807 -