MSTRG.11333.1.p1 (mRNA) -

Overview
NameMSTRG.11333.1.p1
Unique NameMSTRG.11333.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:1304686..1307230+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11333.1.p1 ID=MSTRG.11333.1.p1|Name=MSTRG.11333.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2545bp|location=Sequence derived from alignment at sc0000081_pilon:1304686..1307230+ (Clytia hemisphaerica_ch_hm2_pilon)
GAAGGCCTTAGAGCTTTCTTAAAGTCCACTATGGAGAATATCGAAAAGTA
TCTTAAAGGTGATGACATTTCTGAGGCAAAGTTAAGATCCTTTAAGTCTA
TGCTAGAATCCACTTGTGCCCAACTTTCCGACATCAATGAAGAGATTCTC
CCACTTTTAGACCCTGAAAAGATCAGTGACGATGTAGTTCAAAGCATGGG
ATTAATGCTTCCTGCAACTGAGATCGATGCTTGTCTTGACATTAAGCTTT
TGGAGATAGCAAAATTGAATGGCTCCGCGTCTGTTTCTTTGCCAACTGCA
TCTGTTTCTTCTGGGACAAGTGTTTCTCGACTTCCAAAGATAGAGCTCCC
TACGTTTAAAGGTGATCCGCTCAAGTGGCAAGGGTTTTGGGATCAGTTCA
AGATTTCCATCCACGAAAATGAGCGCATAAACGACATTGACcgctttaat
tttttgaaaaaatatttggttGGCGAAGCCTTGGATTCGATTAAAGGTTT
GACTCTAAACTCTGATAATTACAAGGAAGCCATAGAAATATTATGCGAGA
GGTATGGGAACGAGCAAGTTTTGATTTCGTCACACATGCAATCCCTCTTG
AGGATACAGAAGATAAGATCAAAAGACAACATAAAGAGCCTTCGAACGCT
TTACAACCACGTTGAAAGCTGTGTGCGAAATTTGAAAGCCTTGAAGCTCG
AAGCTAAAGGTTATGGCAGTCTTTTGATCCCtatcttaaaagaaaaactc
cCCGACGAGCTAAAAATTGTGATCTCTAGGAAGTTTGGAAGTTCCATCTG
GACACTAGATTTATTGCTCACTTATCTCAATGAAGAACTTAGAGCTCAGG
AAAATTGCACCAATTCTGGTGGCGGAAAAGCTGAGCGAACTGATGAGAGT
GATCCACTTTATAGTGCCCTTGGTCTCTAATACTGAGAAGAACGTCTGTA
tcttttgtaaaaagagtcacaGCTCTGCTAAATGTCGAAAGGTCACAAAT
ACACAGTCACGTCGGGATATTCTAATTAGAGAAAAGAGGTGTTTTGTTTG
TTTGGCTCGTGGACATCGTTCCAATGCTTGTAGAGATAAGTACTCATGTA
ATAGGTGTAACAAGAGGCATCACATTTCTATTTGCGATGGAGGTAAACGA
AGATCTGAAGCTGATAACATTTCTAACAATCAGATCTCGATCTTGTCCGA
TGCAAATAGTGAGCCTCAGTCTGAATCCAAAGCTCCTTGTAGTTGTAGTT
GCAACTCTGTTCCTACTCCTGTTTCTCAAAATTGTGCTCAAGTTTCTTCA
CGTAGCGTTTTGTTGCAGACTGCAACTAGTGAGATCTTTGGTTCCAGTTG
TCACAACAGTGTGAAAACAAGATTGTTGTTCGACACTGGAAGCCAAAGAA
GCTACATTACGACAGAGTTAAAAGACCGTTTAAAATTAAAGTGTGTGAGA
AAAGAGAATGTAGTGATTAAGACTTTTGGAAATTTGAATAATGCGGAAAT
CAAACGTTTGGAAGTTGTTCAATTCAAAGTGAAACATCGGAAGTCTTCTA
AATACGTTTTAGTTGAAGCTCTTTGTGTTCCAGACATTTGTAGCCCGATT
GCAAACCAGAAGTTGGATTGtgcaaaaaagttgaatgaatTCTCTGATTT
GGTGTTTGCAGATGTTTCCGAGGAGTTTGACTTGAGTATAGGTGTATTGG
TTGGTATCGAtttttattttcgcttttttaCTGGTAAGAGACGTGAGAGC
AAGGAAGGTGTTGTGGCTTGTGAGTCTTCACTTGGTTGGATTTTGAGTGG
ATCTGTTGTTTTCAAAGGTTTGACTGAAGTGACTTATAGTCATCAAATGA
GAGTTGAGGTACAAACTGTTGATCCACTTGATGCCAAGCTCCATAAGTTT
TGGCAGATAGAGGAGGCAGAGAGTGCCGAGGATAACTCAGTGATTAACCA
ATTTACCAAAGACATTTACCATGATGGTACTAGGTATGTCGCGAAACTGC
CTTTCAAGCCTGACCACGAGAGTGTGCCTGACAACTTTTCGACCTGTGTG
AAACGTCTGGAATCCCTTAATTCGCGTCTCGATCGTCTTGGTATCAATGC
TGACTacgagaaaattttttattgattatgAGAAAGACGGAATTATCGAA
CGTGTGCCTGAGGCGCAGATTGCGAAAGAGGAGGGTACCGTTCATTACAT
TCCCCATAGACCAGTTATCCGTGAAGACAAGGTCACCACTAAGATAAGGC
CCGTGTTTGATGCTTCTTGTTCTGTCAATGGTGTATCTTTGAATGATTGC
CTTTATCCTGGTCCAAATTTACTTGCTaagatttttgacattttactaCG
TTTTAGAATGAACAAGATTGGTATTTTAGCTGATATCAAGCAAGCTTTCT
TGAATATCAGCATCCATCCTGATCATAGAGACTTTTTGAGATTTCTCTGG
AGAGACCCTTCGTCCTCTGATAGAGAAATCGTTGTCTATCgttttttgag
agttgtttttggtttgacgtctagtccttttttACTCAATGGTAC

Coding sequence (CDS) from alignment at sc0000081_pilon:1304686..1307230+

>MSTRG.11333.1.p1 ID=MSTRG.11333.1.p1|Name=MSTRG.11333.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000081_pilon:1304686..1307230+ (Clytia hemisphaerica_ch_hm2_pilon)
GAAGGCCTTAGAGCTTTCTTAAAGTCCACTATGGAGAATATCGAAAAGTA
TCTTAAAGGTGATGACATTTCTGAGGCAAAGTTAAGATCCTTTAAGTCTA
TGCTAGAATCCACTTGTGCCCAACTTTCCGACATCAATGAAGAGATTCTC
CCACTTTTAGACCCTGAAAAGATCAGTGACGATGTAGTTCAAAGCATGGG
ATTAATGCTTCCTGCAACTGAGATCGATGCTTGTCTTGACATTAAGCTTT
TGGAGATAGCAAAATTGAATGGCTCCGCGTCTGTTTCTTTGCCAACTGCA
TCTGTTTCTTCTGGGACAAGTGTTTCTCGACTTCCAAAGATAGAGCTCCC
TACGTTTAAAGGTGATCCGCTCAAGTGGCAAGGGTTTTGGGATCAGTTCA
AGATTTCCATCCACGAAAATGAGCGCATAAACGACATTGACcgctttaat
tttttgaaaaaatatttggttGGCGAAGCCTTGGATTCGATTAAAGGTTT
GACTCTAAACTCTGATAATTACAAGGAAGCCATAGAAATATTATGCGAGA
GGCGCAGATTGCGAAAGAGGAGGGTACCGTTCATTACATTCCCCATAGAC
CAGTTATCCGTGAAGACAAGGTCACCACTAAGATAAGAAGGCCTTAGAGC
TTTCTTAAAGTCCACTATGGAGAATATCGAAAAGTATCTTAAAGGTGATG
ACATTTCTGAGGCAAAGTTAAGATCCTTTAAGTCTATGCTAGAATCCACT
TGTGCCCAACTTTCCGACATCAATGAAGAGATTCTCCCACTTTTAGACCC
TGAAAAGATCAGTGACGATGTAGTTCAAAGCATGGGATTAATGCTTCCTG
CAACTGAGATCGATGCTTGTCTTGACATTAAGCTTTTGGAGATAGCAAAA
TTGAATGGCTCCGCGTCTGTTTCTTTGCCAACTGCATCTGTTTCTTCTGG
GACAAGTGTTTCTCGACTTCCAAAGATAGAGCTCCCTACGTTTAAAGGTG
ATCCGCTCAAGTGGCAAGGGTTTTGGGATCAGTTCAAGATTTCCATCCAC
GAAAATGAGCGCATAAACGACATTGACcgctttaattttttgaaaaaata
tttggttGGCGAAGCCTTGGATTCGATTAAAGGTTTGACTCTAAACTCTG
ATAATTACAAGGAAGCCATAGAAATATTATGCGAGAGGCGCAGATTGCGA
AAGAGGAGGGTACCGTTCATTACATTCCCCATAGACCAGTTATCCGTGAA
GACAAGGTCACCACTAAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11333MSTRG.11333Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11333.1.p1.exon1MSTRG.11333.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11333.1.p1.exon2MSTRG.11333.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11333.1.p1MSTRG.11333.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:1304686..1307230 +