MSTRG.1133.1.p1 (mRNA) -

Overview


Name	MSTRG.1133.1.p1
Unique Name	MSTRG.1133.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:2747941..2750084+
coding sequence from alignment at sc0000005_pilon:2747941..2750084+

mRNA from alignment at sc0000005_pilon:2747941..2750084+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.1133.1.p1 ID=MSTRG.1133.1.p1|Name=MSTRG.1133.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2144bp|location=Sequence derived from alignment at sc0000005_pilon:2747941..2750084+ (Clytia hemisphaerica_ch_hm2_pilon)
AGCCGTGAACTTATGCATCAACATCAATAATAACACAAACTATATCGATG
GGCTCACTATTCAGTACAATGATGGCGAAACTGAGAAAAGATTGCTAAAG
CTTGAGCAAACTGAGTTTACTTCCAATGACCAATTCACAAAGAAAGAATC
AAGGGGGCTTTTAGCACCGCCATCACTTCGTTATGTTGTTGATGAAGAAC
CAGAATTCTCGAATGTCACAAATGCAGCACCTGAAACCTTTGGCGATTAT
TTGAGAACTCCTGTTTGTGGTGTATCCCTCATATCTCTTGAAAACTTTCC
CCAGCAACCTTCGTTCGAACCCAACCGATCTTATCAGGCTAATGATGGAT
ATGTTATCCCTTCAGCAGATCAACCAATTGAGTCATTAGCAGATTATGAT
GCAATGGATGTCTCAGCACCGCAGCTTGGAGACATCGAATTGGACCAGCA
AACACTTTCGGTAGCTAGTAGTTTGTTGATGGATGCTTACTTAGAAATCT
TGAGTCAGCATTTACAAGAAGAGCCTGTTTCTGCAAGAAGTAACGTCAGC
CCTCCGATGGAATCGTTGCCAAGAAAACAAGGTGATGATAATGTAGCAAA
ACTTGCCAACATGGTTGAAGAAATCGTTGAGAGTAATGGCCAAGACGTCC
ACTTTTATCAAGCTCAATCAGATACTGTCGAAGAGGAAACAATTGTTGTT
GGAAGAATTGCAGATAACTTGAAGGCTTCTTGTGAGAAGGTTCTTTCTGA
CCTTCTTACAGAAAATGAAGATGGTGACAAAACTATCGATGGAAACATTc
tgataacaaaaagaaagaatgaaGCTGTTGAAAGTGATCACGGCACTGAA
CTTTCGTCTGACAGTGAAGGGttagaaaatatcaagaatGAAGATGTCCG
GTTAGTACCTAGACCAAAAAAGCGACGGAATCGCACTAAAAGAGGAAAGT
CTAAACCCTATGAGAGAACCCAACAGGCCAACGATCATGTGTTTACACAA
AACATTTCAACTGATTCAAGACCATATATGGCCACAGCTATTGTCCAGGA
TCCCAGCGACAACCAAACTACACCTTTGACaaaaaatgagggaaaacgcc
ctcgaaccgaaaaagagaaaaaggctaacAcaaaaGATTCAGTTAAATAT
CGGTTCAATATTAAGCTTAATGAGAAGGTCAAAGTCCTTGAACGCCAGCT
GCAAGATTCCTCTATGCAACTTGAGAAAGATTGTATGAGAGAGCTGATCC
AAGCAAATGTGGACAAACTTATTTCTCTTCTATTTCAGACGGATAAAGAC
GACGATGAAATCTTCAAGCATGCGTGTCGCATGATATCAAATTTCATTAG
CGAGATCCGATTTGGCGATTTAGATGAGCCAACCATGGCTGCTAAAAGAA
AGCTTTTTGAGACCATGATTATGCCAGCTATCAGAAAAAAGCACCCGGAA
ATGGCAAGTCAATTAGCAACGGCCTTTCAGGTGAATTATGTGAAACATCA
CATGACAGAAAACGGGGATTGGCTTGCATCGATTAGAAAATTTTACCGAG
AcgaatttttgaaataacagTCGATTAAAATATACCAACACTGTACGGTA
TGAATGAATTTGGTTTGGTTTGTTTGAATGATAAATGGTTTGGTTAAATT
GAAAGAATAACAAAGCtttatttgatgatttttctttattaaattCAGTT
CAAAATTATATATTACATAAACACTTTATGTCGAGCACTGTCTTTGGTGA
TGCAAACCATAGCTAATAGATATAACTTAACTGATTTATCAAATCctact
ttaaaggttttattgttttacataagtgttcccgttttatatcagacaca
tatttcatatcaggacagtgtcagccttttgttaaattttgctatatgag
caaaaaatgtttttcttttcctctttgtgtgaccaatcttgctccacaaa
cGTGTTAATCCAATGTTCAAAAGCTTTTGAATCAAAATtgctgagtaagc
aaacgataccacTCTTATTTTAAAACCTTTATGTAAGCTTTTAATATTTG
TGTCTAATTTGATTGCAGTAAATTTTCACGACACtagatttcttttgatt
acggagaaaaatttaaattgatgGGAGCGCTTTTTCCTTTCtca

Coding sequence (CDS) from alignment at sc0000005_pilon:2747941..2750084+

>MSTRG.1133.1.p1 ID=MSTRG.1133.1.p1|Name=MSTRG.1133.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000005_pilon:2747941..2750084+ (Clytia hemisphaerica_ch_hm2_pilon)
GCCGTGAACTTATGCATCAACATCAATAATAACACAAACTATATCGATGG
GCTCACTATTCAGTACAATGATGGCGAAACTGAGAAAAGATTGCTAAAGC
TTGAGCAAACTGAGTTTACTTCCAATGACCAATTCACAAAGAAAGAATCA
AGGGGGCTTTTAGCACCGCCATCACTTCGTTATGTTGTTGATGAAGAACC
AGAATTCTCGAATGTCACAAATGCAGCACCTGAAACCTTTGGCGATTATT
TGAGAACTCCTGTTTGTGGTGTATCCCTCATATCTCTTGAAAACTTTCCC
CAGCAACCTTCGTTCGAACCCAACCGATCTTATCAGGCTAATGATGGATA
TGTTATCCCTTCAGCAGATCAACCAATTGAGTCATTAGCAGATTATGATG
CAATGGATGTCTCAGCACCGCAGCTTGGAGACATCGAATTGGACCAGCAA
ACACTTTCGGTAGCTAGTAGTTTGTTGATGGATGCTTACTTAGAAATCTT
GAGTCAGCATTTACAAGAAGAGCCTGTTTCTGCAAGAAGTAACGTCAGCC
CTCCGATGGAATCGTTGCCAAGAAAACAAGGTGATGATAATGTAGCAAAA
CTTGCCAACATGGTTGAAGAAATCGTTGAGAGTAATGGCCAAGACGTCCA
CTTTTATCAAGCTCAATCAGATACTGTCGAAGAGGAAACAATTGTTGTTG
GAAGAATTGCAGATAACTTGAAGGCTTCTTGTGAGAAGGTTCTTTCTGAC
CTTCTTACAGAAAATGAAGATGGTGACAAAACTATCGATGGAAACATTct
gataacaaaaagaaagaatgaaGCTGTTGAAAGTGATCACGGCACTGAAC
TTTCGTCTGACAGTGAAGGGttagaaaatatcaagaatGAAGATGTCCGG
TTAGTACCTAGACCAAAAAAGCGACGGAATCGCACTAAAAGAGGAAAGTC
TAAACCCTATGAGAGAACCCAACAGGCCAACGATCATGTGTTTACACAAA
ACATTTCAACTGATTCAAGACCATATATGGCCACAGCTATTGTCCAGGAT
CCCAGCGACAACCAAACTACACCTTTGACaaaaaatgagggaaaacgccc
tcgaaccgaaaaagagaaaaaggctaacAcaaaaGATTCAGTTAAATATC
GGTTCAATATTAAGCTTAATGAGAAGGTCAAAGTCCTTGAACGCCAGCTG
CAAGATTCCTCTATGCAACTTGAGAAAGATTGTATGAGAGAGCTGATCCA
AGCAAATGTGGACAAACTTATTTCTCTTCTATTTCAGACGGATAAAGACG
ACGATGAAATCTTCAAGCATGCGTGTCGCATGATATCAAATTTCATTAGC
GAGATCCGATTTGGCGATTTAGATGAGCCAACCATGGCTGCTAAAAGAAA
GCTTTTTGAGACCATGATTATGCCAGCTATCAGAAAAAAGCACCCGGAAA
TGGCAAGTCAATTAGCAACGGCCTTTCAGGTGAATTATGTGAAACATCAC
ATGACAGAAAACGGGGATTGGCTTGCATCGATTAGAAAATTTTACCGAGA
cgaatttttgaaataa

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.1133	MSTRG.1133	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.1133.1.p1.exon1	MSTRG.1133.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.1133.1.p1	MSTRG.1133.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000005_pilon	genome	sc0000005_pilon:2747941..2750084 +

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MSTRG.1133.1.p1 (mRNA) -