MSTRG.11312.1.p1 (mRNA) -

Overview
NameMSTRG.11312.1.p1
Unique NameMSTRG.11312.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:1042238..1044625+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11312.1.p1 ID=MSTRG.11312.1.p1|Name=MSTRG.11312.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2388bp|location=Sequence derived from alignment at sc0000081_pilon:1042238..1044625+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTTTTggtaaaagaaaatcaaagagCAGTACAGGAGCTTCTCTGAAGAG
GTAAGAATTCTTTTTCTACTTTTACTAAGAGGCCCTAAACCAGTTTGCGA
AATTACGTGATCGGGCGGCTTTTTTGGCGTGATCCAAAAAGCATGATGAG
TGATTATTAGGGGAATTCTTTTGGTGCGACCGGAGAGTATTTTCGGCTTG
ATGGTACAATGTTGGGGTAATGGCGTGATAAGAAACTTCGCAGAAGGGGC
CGCTACGAAGATgattactttcttttttttgctcaaaattggGCTGGTAT
CTTCTTGACTTGCATGCTACAGTCAGATCTGTTTAGCCTTACTGCAAAAC
GACATGTTTTACTCGAGCACGATCCCATTTCAATGCTAGAAGGCTGAAGG
TGTATCACACCATTATCATACCAtgatatttttattacatttatATTTCG
CAGGTACATCATAACAAAAAGGAAACATGATGAAAGTAGCAAGTATTTTG
GTCTTTTTGGTCGTTGCAACTTCAATTGAAGGCTATGGTGACCCAGGTAC
GTTTATCATTATCatcatttgtaattttttacatACTGTACAATCTGCGT
CAAAATTTCTATTGAGAATTCTGGTTATCTCTTCGTTTTCAGAAATTTGA
AGTTCGGAGAAAGTTGCTTTTGGGCTATTTGCTAAATGTAATCgaataat
gaaataaaactcTACCTAGTTAgcaaaaaacgttgttttaacgtcgcTTT
AATGTTCACAGCGTCCAAATAAggttatatgaacgttgaaacaacgtaat
gtgccagctgggtacccttccaacctaagtaAGAGCGCTTCTTAATTGTT
TGTGGCTAtgagatttcgtgggaattttcattttctctcaaatattttga
tttagattGTAGAAAAAACAAAGATCGCCCAGAATGACGAACTGCCAGTC
CAAATTCTCAAATTAGTCCACTTTATTCCACTGACCTTTACATACCCTTA
ACTAAATTTCTCCACCCcgaccaagcaaaatctttgatcggagttttttt
ttaatgttatcctaatggtagcactagtcaatagcggtgtaaaagcatcg
agagcgctagaacCAATTCATTcttcgaatacttttgatggtGTAGCGCC
ATTAGAGGttatattttttaacaaaaaaagggCTTCTTTTCGGATAccac
tttttaaaaaacaacgATCAAAGATGGTGCACATAGCTTTGTCAATacta
tataaaggtcagtactATGTTCCTTCGAACATATCTACAATGTACAGAAT
TTCATATTTGCATGTCGACAAATAATATACCTTGAATTCCCCTAGCTCCA
GGTGACCCTGGACATCTATTCTATTCTTCGTCAATAAATCTTTCAATCGA
AATTTATTCTTCCATTCCATAGTTTTGCTTCGAGTACGATCAGTGAACAC
TGTTTACACCTCAACCTATCTCATCAAAAAGACACCATTGAACATGCATG
CAGCAAAGGAAGCTTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGAT
GATCTCCCAGAACATCATTTCTTGGTCAATGAATTACAGTAAGTACAATA
TGAAACAATACCAAGGTAGATTTCGgtttcaatacacctttttcgAGCGT
AGCAGCCAATTGCCACGCGGGAATTTCATTGTCCGTTTTatcgttttacc
accctaaaaccatactagtcttttttcgcacctatagacaatagaaaaaa
gtgtaaaaaaaaggattggatcgagtttacggggtggtaaaacggacata
AAATGCCCGTACGGcaacggtcgaaaaggtgtattctttGAGACCCTAAG
TTTTGTAtggcaaaaattaaatttcttcaTGAGCGCGTTTTATTGATTAT
TTAAAAACCAGAGGAGAAGATGGAGATTAAAAGTTCTTTATTTGATGTGG
CTGATCATTAACCTGTTATAAACAATTTTGTTTacctctattacttcaaa
tcaccaattagtgaagtattttataaaaactccagctcatctcaAAGCCA
CGTGGCACCATCCTGTACTTTTATATTCGATCCCTTACATAGGAAACTTC
ACATCAAATCTGCCTGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTG
TTCAGATGGGATGGTTCAAATCTTCCAGGATTCAAAAAATGGTGTCCACA
CGAGCCAAACAATTTTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTG
ACAAGAAATGTTTGAACGATCTTGGTTGCGCGCATGTGCGGccatacatt
tgtgaaatcaaCCAAAGCAAAGTGACCAGTGACGTCACAGTCTAAAGAAC
CACAACATTTTGTTATCGTTTTTATTTAACCATTTTTT

Coding sequence (CDS) from alignment at sc0000081_pilon:1042238..1044625+

>MSTRG.11312.1.p1 ID=MSTRG.11312.1.p1|Name=MSTRG.11312.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1467bp|location=Sequence derived from alignment at sc0000081_pilon:1042238..1044625+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGAAAGTAGCAAGTATTTTGGTCTTTTTGGTCGTTGCAACTTCAAT
TGAAGGCTATGGTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTG
TTTACACCTCAACCTATCTCATCAAAAAGACACCATTGAACATGCATGCA
GCAAAGGAAGCTTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGA
TCTCCCAGAACATCATTTCTTGGTCAATGAATTACAGAAACTTCACATCA
AATCTGCCTGGGTTGGATTAAACGACAAAGCTTACGAAAAAGTGTTCAGA
TGGGATGGTTCAAATCTTCCAGGATTCAAAAAATGGTGTCCACACGAGCC
AAACAATTTTGGAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGA
AATGTTTGAACGATCTTGGTTGCGCGCATGTGCGGccatacatttgtgaa
atcaaCCAAAGCAAAGTGACCAGTGACGTCACAGTCTAAATGATGAAAGT
AGCAAGTATTTTGGTCTTTTTGGTCGTTGCAACTTCAATTGAAGGCTATG
GTGACCCAGTTTTGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCA
ACCTATCTCATCAAAAAGACACCATTGAACATGCATGCAGCAAAGGAAGC
TTGTGCTAAATGTGGAGGTTTCTTGGCAACTATTGATGATCTCCCAGAAC
ATCATTTCTTGGTCAATGAATTACAGAAACTTCACATCAAATCTGCCTGG
GTTGGATTAAACGACAAAGCTTACGAAAAAGTGTTCAGATGGGATGGTTC
AAATCTTCCAGGATTCAAAAAATGGTGTCCACACGAGCCAAACAATTTTG
GAAACGCTGAAGACTGTGTTGAATTGATCGCTGACAAGAAATGTTTGAAC
GATCTTGGTTGCGCGCATGTGCGGccatacatttgtgaaatcaaCCAAAG
CAAAGTGACCAGTGACGTCACAGTCTAAATGATGAAAGTAGCAAGTATTT
TGGTCTTTTTGGTCGTTGCAACTTCAATTGAAGGCTATGGTGACCCAGTT
TTGCTTCGAGTACGATCAGTGAACACTGTTTACACCTCAACCTATCTCAT
CAAAAAGACACCATTGAACATGCATGCAGCAAAGGAAGCTTGTGCTAAAT
GTGGAGGTTTCTTGGCAACTATTGATGATCTCCCAGAACATCATTTCTTG
GTCAATGAATTACAGAAACTTCACATCAAATCTGCCTGGGTTGGATTAAA
CGACAAAGCTTACGAAAAAGTGTTCAGATGGGATGGTTCAAATCTTCCAG
GATTCAAAAAATGGTGTCCACACGAGCCAAACAATTTTGGAAACGCTGAA
GACTGTGTTGAATTGATCGCTGACAAGAAATGTTTGAACGATCTTGGTTG
CGCGCATGTGCGGccatacatttgtgaaatcaaCCAAAGCAAAGTGACCA
GTGACGTCACAGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11312MSTRG.11312Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11312.1.p1MSTRG.11312.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11312.1.p1.exon1MSTRG.11312.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11312.1.p1.exon2MSTRG.11312.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11312.1.p1.exon3MSTRG.11312.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11312.1.p1.exon4MSTRG.11312.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:1042238..1044625 +