MSTRG.11298.4.p2 (mRNA) -

Overview
NameMSTRG.11298.4.p2
Unique NameMSTRG.11298.4.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:853929..861702+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11298.4.p2 ID=MSTRG.11298.4.p2|Name=MSTRG.11298.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7774bp|location=Sequence derived from alignment at sc0000081_pilon:853929..861702+ (Clytia hemisphaerica_ch_hm2_pilon)
AATTCAACTGTTTCTGTTTCTATACTTTTATTTTAGAAACAAGATTCAAA
GAAAATCTCATTGATCCTCGGACACgtgattctaactcaactgtgATAAA
GGATGTTTATGATGGAAAATTTTATAAAGATCTTATAAAAGatggatatt
ttgaaaatgatggcaTTAATTTAACTTGTCAATTGAATACTGATGGAGTT
AGTTTGTTCAGAAGTAGTACATTTTCAGTTTGGCCCGTTTATCTGCGAAT
CAATGAGCTACCACCCCTGTTGAGGTATACTTTAAAGTTCTTGGAAATAT
TATAATACATAATTATGCTGAACTTCATGGTGAAGATCAAATTCATAGTT
AAAGACCAGGACCAGGCTTGGCaatatcattaaaaaattatgttttacaT
CACTTTGAAAAATGTCTACCTCTACCTACCTTTTCAGAAAATCCAAAGAA
TTCAAAATACTGCCTGGTTTATGGTTTGGCAAAAAGAAGCCGTATATGAG
GACCTTTCTGCGACCAATTGTAGATGCAATGAAAAACTTGTGCAGAGGTA
AATTAGAGCTCTTGTTCTTTTTCAATAGATGTTTAACTAacagtggaata
ttatcatatcaattttttttgacaaaacttCAACACAAAAGATGAATTCT
CAAATCAATTTCTTGTGGAATTGTGTTATTAATACCATTTTCACACTTAG
TATTAGTGAATCTCTATTCTTAGAACTTTTATCAATGTGagagaaatttt
atcaaatcataaagttacagatatttttgttttcactagCAATTGTATTT
AGATAGTCATTAGATTATAATGATTTCTTTAGGCTTAGACCTTGAATTAG
ATGATGGATCAAACAAGACCGTTAGGATGGTCATCTCTGGTGGACTTTTT
GATCTTCCCGGTGactgttatttttgtttcaagGGGGAAGCATTTATGAT
TTTGTAAAactctttcaaattttctgtTGTTTCTTCTCCTTTCCTTCTTC
TGTTGTCACATGATGGACGTTATTTCAAATTGCTTCAGTGAATGCTAATC
AGTGCTAGTGAAAATATATTTAGCCATGTTATGATTATGTTTTGATTATA
TTCATTTTAAGTAACtagtaatttaaaatttcttaagCCTTGTGAAAAGT
AAAGATAAATCACTTTAGAATAAATCAGGGGATCATGCAGTTACTGTGTG
AACACCATAGTGTTATAGAGAAACTCTATGACCCCCTGAATAATTGGTAG
TTTAAAATCTTGATGATTGTTACTTTTTTCTCCTAGCAAAATGTCTCGCT
CAGGAAATGATCCAGTACAATGGTTACTTTGGCTGCAGTTTTTGCGAGCT
AAAGGGAGAGCGTGTTCAGTGTACTGGCaaaaaaaaGGGATCAAAGACTG
TTTTTCCAATGATAAAGTCAAAGGATTTAGTACTTAGATCAGAAGAGAGA
ACGATGGCCCAAGCACTTTTAGcaattgaaaataataagaCAGTAAATAT
TATTTATAAACCATTTgaatatacacgctttttttataatatagtgtact
gagggtcaagtattctcaagaaattgccaaaattgaagatgaaatatTCT
TTAATGTAGAGTCATGTCGTCAAATTATTACGGACAAAGTcagatttttc
tgaatttttcatTACATACTTGATGTTAGTAAAAAATACTTTACAGTCAA
CTAATGTAGCCCtttttttGTGATGTTTTAGTATGGCTCTTTCCTATTTT
GGACTAACAAGCACATTGGGAGCTAAAGTTTTATTTCTACCATATAATTT
TATACCTTTGTTAGAATACCTAGaatctgtgaaactcaccctgGAGGGTA
TTCTTaagatttggccaattttcaccctgatattcttataaaaggtattt
ttataaaaaaagcgtgtaataattttctttttttgagcaGTTTTATATCT
TTTTCCATTAACCTTTATCTCCTATCTtattaagggaacttattttggcg
ggaactaattttgctaACTCGCCAAAATCAGTTtccaccaaaattaattt
tatttcttgtcTTGTCTAAATAACctctgaaattcatcaaagttgctcaa
aataaggcaaaatagagcAGAGTAGATTCACGCTgtcattcaccaaaatt
agttttcgttaaaattaaaaaatttcaggatttttgcAGCTCGCCAAAAT
CAGTTCCCGCcgaaataagttcccttaaggtattttggAACTCTAGATAA
TCtttttacaagatttaccccctatgttttaaaagatatgatttttagat
gattttttctttcactttaggtttttGGGATCCGTGGATTTTCTATCCTT
GGGGAACTACCACATCTGAATATCATATGGAATTTCCCCTTTGACTATAT
GCATGGTGTATTCTTGGGGGTAGCAAAGTAAGATAAttgctatttttcaa
aattgaaaatccaAGTGAAACTAAATCTGAATATAAATGTTGCATTAGCC
TGGAATTATAACCAGGTAGAATTAGTACTAATAATCATATATGAAGGAGG
GCAATTCTGATCTTTTGTCAATTACTTTTTAATGAATAATGTAATgaagg
aaaagatacctttaaataaaaacaaaagacataaagaaaaaggaaagata
aattagaaaaaTCAGACTTCAAGATCCATTATAAACATTAGCTTTTCCAA
ACCGTGCAATTAGAGATTCAATCTGTGAAATTAGGAATTGATTTCACGGT
TTGAGCTTAGAGAAATAGCTTAGGAAAAATTTCATCATatgattagtata
tgtaatcacatgataacgagtgcaattcgaatataattgcacgagtgatt
tttttgttattagaaacaaaaaaatcacgagtgcaattttcgaattgtac
gagttattatgtgattacgagctaatCGCACAATGGCTTTCACTACTTTT
TCCCAGTTAGGAAGGTAAATTACAGAAATTACACTGAGAGTTTTATATTT
TTCTCTTCTCTTTATGTCTTTCTTTTATTGTTGTTTATTGATTTTCTTTC
TCACAAAATAAATTTCGAATGCAATTAAAACGTTCGATGCAAaaaaaaat
gtaagaaaaaacattaaaatcaattttgtaaatattggcacctcattgaa
gagtgtgattaacgattaattgctctctacaggatgcaattaacgattaa
ttgctctctttgaaggcgcaccaaagaagaaaaaataactcatcgtgcga
ttaggtCATTAACCACCAAAactgagacaaaaatggtgtagagattaAAT
TTGGCACAGAGTTCCAGGAACATGTCAGGGATCACCAAATCCTGTAGGAA
GAGGATTCAATATGTTAAGACCAGTTGTTGgcaaaatcaacatttttctg
ACTTTAGAGGTCATTTCTCAGGACCCACGTGgtctaaatttcaaaagtgG
TGATCcctgacatgttcctggacctcagtgccaaatttcatctctaagcc
attttttgtcCAGGTAGCTATGCAATCCTACCTGGTTATTAGTGATTGTT
ACGTGCTTAAAAATATACCACAATGCTATTTTGACAGGAGTTTGGCAAGC
TTATGGTTCGACTCTGCAAATTCTAAACATCCATGGTATCTTGGGAGAGT
AAGTAAAACTATTGACAAGAAGCTTGTTGCAATTGAACCGCCAGATGAAA
TTTCACGATTACCTCGAAGTATCATTGACCATCGTGGATATTATAAAGGT
AGTGTATCCCTATTATTGCAACAAAGTattcaaatgttttcttttgtgaC
ATTCAGaggaaaaattaaaactatCCTTTCAAAATTGTAAGAAAATTATT
GCTCTATTAACCTCAATTAAAGTCAACAATCCATTCAGATTTataaagaa
ttaatttttttgtcattcttgtGCTATTTTTATATATTCCTAAATCAGAG
AGTTGATAGAAAAGTTCCTAAAAGGTTGAATTCATAATATAGATCTTTAC
ATATTTTTACATTATAATAGCTTGTTACTTACTTTTGATATAGAACTCGT
TACTTCTTAGCAAACGAATATCGCAACTGGTTTTTCTTCTTTGCTCCAGT
GATTCTCCAAAATATATTGCCTGAGCCATATTACAGGTGAGTTGAATCac
caaaatcttgatttttgttCTACTTAATGTTTGATGAGGAACCATGGTTA
CAAAGTTTTTCCCTCTCAgccattttcaaaatgactcTAAAAGAGAAACC
AGTAAAAACGAAGAATCTATAGGGCGCATTTAATGTAAAAATCAATTGTT
TGTCGGCAAAGAAATCTGATTTGAACTCAAAGATCTCTCTGAAATCACTt
ttatgcttttttataagaattgtgTACTTCGGTTGAGGGTCAAGTTCTGT
AAAACTGGGAGGTAGTCTTAGGGGTATTGTTACGATTTGGTTAATTTTCT
CTCTGATATTCTttgaaagctatttttataaaaagtgtgtaaatgtttaa
catattattttagtATTGAAATTATTAACTTGAACGTGAttaattctttt
cttttacaGTCACTTCCTTCTACTTGTCcatggaatttttattttgcaaa
agGAAGAAATATTGACAATGGATTTGAATTTTGCAGAACAGCTTTTGTTT
AAGTTTGTTCGTAAGATGGATGAGGTTTATGGTAATTGGATTCAAATTGC
AATTGTGCAGAAGATTTATTATAATTTTAGGgaaattttcctaagaaaag
aTTCCTCTCTACTTCTCCTCACTTATTTTATGGCAataaaattgcctaaa
attgtgaaaaagattctatttattgaAAAGACCTCAGGATCATTTACCAT
ATTATTCTCAGGTGCCTAATTGAAATTGAGACCCCCCACGAAACAGAGTT
GAGGCAAGAAATTAATATTTTATCATATCCATCTCTTAAAGATAAAGCAG
CGTGTAAAGCAAATGTACACAATGTTGTTCACTACCCAGAGCAAGTTAGA
TGGAATGGACCTTTGTGGGCATCCATGTCTGGTTTTACATATGAAAATTG
GAATGGAGAATTCAAGTATCTTTTTCATGGGACGCAGCACGTTGATCATC
AGGTGTGTGTTGAAACACCTTTTTACATTTCAAAAGATTCTCCCGTCCTT
CTAATATCAATgtaaactttcaataattttgttTAATGATTTAAAGTATG
TTATTCATATTTCTACAGATTGTGACGTCGGTGAATGTTCGTCTCCGAAT
ACCCGAGATTGCGAGATCTCTTACAGAAGGATCCCTCGAGTGGCACTTCT
ACCATAAACTTATGTCAAGTGGGTGAGTAGTTATTTTTACGATGTTTAAT
AATATTTACTAAATTTATATATATGTCAATGATATTGCTGGTTGAGGAGT
TGAGGAATCAAtagaaatttaaagaatttctgtccaacttcTGTCAGGAG
GTTTGGGTGAAAGAGCAGCAATacaattatatttttgatttctctttttt
aatttttcagatttgaaAGTAAGAAATTTTGCTATGGCCCCTTCAAAACT
CTGAAATCTTTGGAGGATGGATGTGACAGACGTAATTTAATAGTTCAAAC
GTAAGTAATAAAAgtattcttttttttgttttgcatcaTAGCATTTACGT
CTTAATCAACAATAGTTATCTCTGATACAAATTAATAGTATATATTTCTG
TTTGCCATAAATatgtgtttgtttattttttttaattttttctaatgtat
atatataaattaaatatttataaataaatattttctaatcCATTTAGgac
atttatttacttttagaaTTGTCAACTAAtaacagaaaattaaaaatcaa
aaaataaatgtgttcttagatttgaaataaatctttaaaatgttaTGTTA
TCTTATTTCACTTATGATTTACAGAGATACCATAACCagatttgaaagaa
tttgtaTTAACAACACAATGTTCAAATCAGAAGGCTACACAAGAACTACA
AGAAGATGTAATTTTGCTGTTTATGCTGAGGTTGATAATGTCTTGGTCCC
TGCCATTATTAAATACTTCATTCAGGTAAGATTTGCGGTTGCTTTTTATT
CAAGTTGCATCATCTGCTTGCTGTCAAGAGCCAGTTTTTACTAAGATTTA
TTGCCATGTAAatatttatcaagcaaaaactgaaaaaaacgtATAGGTTT
ATCGAGTTGGGAAATAAATTCTTGCTAGTTGAGGTTTGGGCATTGATGTT
GAAAGTGGAAGTAATCATGTTGATTATGTGGCACTGGGTTCGCAAGCCTA
TATCACATGGAGCaaaaatcgcacccttacatatttacagtgcagcaaaa
aacTGGTGAAATTAATATCCTTACATTGCTTGTATGTTTTAGGTAAATCA
AGGAGATCGCAATCTTGCTGTACTCAATATTCTCAAAGATTCTGGAAAGA
GTATTTGTGGTCAAGTCGATGAACTTAAATTCAAGGTTACCCACATCAAA
TGTCTTGAGAGGTATATTGTCATCCTATCATTTTAAAGTAACTAACAAAG
CTTACCTCCACCAATATCCTAATTCTGCTTATTTGAAGGTAGCCGCTAAT
AGTGTCAACAGTTTTTCTTTCAGTTAGTCCACTTTTTGTTAATCATTCTC
TTCTGAGCTTCTGGgcattaagcagagaggcattaaaggggaattaacgt
ttcaAATTTGTCAACAAACAAATGACAGATTCGAATAGAGCTCATTGAGa
cgatttcaaatatatatggttTATAGGGCTTTACTCTTCTACATCCGGAA
TAagagttgtttgaaaattctCTTGTGTTGCTATGGATACGAAAAATGTG
ACGTAGGGTGCGAactgtgtttctcttttttataagggaagagtggtgaa
tgatgatttaaaatgcagtttttgagtttctttttaccGTTAGAGAATTT
ACTGCACCTTTGGAATACTAACTACATCCTCCTAGTTTTATGTCTTCAAC
GTTTTGCTATAATTACTCTAAAAAAGATTCGTTTCTAACGTTTTATAACT
CTTTAACAACAAAATAGAGTGTAACAGTGAGAATAGTTGGGGCGCacttt
acgtcacaaaatacacAGAggggggggTTCTTCATTGTAAAGTCAAAATT
GTGAGAAATAAAAGATTAAATAACTcaatgaataaaagacattttgaagt
ggttctttttttgttcgatcacattttttaatttcaaacgttaattcccc
tttaagCACACTTAGTGAGCCTTCTACATGGATTGAATAGATGCCATCGT
ATCCTTTggtaaacttttttgtttaatgCTTTAAGATGGTAGAAGCCTCA
GGTATGGGATTTGATAAATTGAAGGATTGTATTTCTTTtagaacaaacaa
aaacattttggtTGATGTCACCGCGATAAGGAAAAAACAGGTCCTTATAG
CAGTTGACGATTTGGTTTATTTCGCTGATTTTGTCAATCCATACGAAAGT
GATTAAAATTGACTCAATGTTATTCATTTAGTTTTACATTTTCAACAAAT
CAACAGTGGTTGATTTAAAATTGGCCAGATTTAAGGTtgaaacatatttt
gaagtttgctCATACTTTCAGTTaaattttcatgcaaaaacaattttttt
tctgcaaattaaGATTTTGTATAATATGATTTACCCCttataaaacttaa
aaactattggttttttttctattcttatCAGATACAATGACTAGATGGTT
CCCGCCTATgcaaaaatatccaaa

Coding sequence (CDS) from alignment at sc0000081_pilon:853929..861702+

>MSTRG.11298.4.p2 ID=MSTRG.11298.4.p2|Name=MSTRG.11298.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000081_pilon:853929..861702+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCAACTGTTTCTGTTTCTATACTTTTATTTTAGAAACAAGATTCAAAGA
AAATCTCATTGATCCTCGGACACgtgattctaactcaactgtgATAAAGG
ATGTTTATGATGGAAAATTTTATAAAGATCTTATAAAAGatggatatttt
gaaaatgatggcaTTAATTTAACTTGTCAATTGAATACTGATGGAGTTAG
TTTGTTCAGAAGTAGTACATTTTCAGTTTGGCCCGTTTATCTGCGAATCA
ATGAGCTACCACCCCTGTTGAGAAAATCCAAAGAATTCAAAATACTGCCT
GGTTTATGGTTTGGCAAAAAGAAGCCGTATATGAGGACCTTTCTGCGACC
AATTGTAGATGCAATGAAAAACTTGTGCAGAGgtttttGGGATCCGTGGA
TTTTCTATCCTTGGGGAACTACCACATCTGAATATCATATGGAATTTCCC
CTTTGATTCAACTGTTTCTGTTTCTATACTTTTATTTTAGAAACAAGATT
CAAAGAAAATCTCATTGATCCTCGGACACgtgattctaactcaactgtgA
TAAAGGATGTTTATGATGGAAAATTTTATAAAGATCTTATAAAAGatgga
tattttgaaaatgatggcaTTAATTTAACTTGTCAATTGAATACTGATGG
AGTTAGTTTGTTCAGAAGTAGTACATTTTCAGTTTGGCCCGTTTATCTGC
GAATCAATGAGCTACCACCCCTGTTGAGAAAATCCAAAGAATTCAAAATA
CTGCCTGGTTTATGGTTTGGCAAAAAGAAGCCGTATATGAGGACCTTTCT
GCGACCAATTGTAGATGCAATGAAAAACTTGTGCAGAGgtttttGGGATC
CGTGGATTTTCTATCCTTGGGGAACTACCACATCTGAATATCATATGGAA
TTTCCCCTTTGATTCAACTGTTTCTGTTTCTATACTTTTATTTTAGAAAC
AAGATTCAAAGAAAATCTCATTGATCCTCGGACACgtgattctaactcaa
ctgtgATAAAGGATGTTTATGATGGAAAATTTTATAAAGATCTTATAAAA
GatggatattttgaaaatgatggcaTTAATTTAACTTGTCAATTGAATAC
TGATGGAGTTAGTTTGTTCAGAAGTAGTACATTTTCAGTTTGGCCCGTTT
ATCTGCGAATCAATGAGCTACCACCCCTGTTGAGAAAATCCAAAGAATTC
AAAATACTGCCTGGTTTATGGTTTGGCAAAAAGAAGCCGTATATGAGGAC
CTTTCTGCGACCAATTGTAGATGCAATGAAAAACTTGTGCAGAGgttttt
GGGATCCGTGGATTTTCTATCCTTGGGGAACTACCACATCTGAATATCAT
ATGGAATTTCCCCTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11298MSTRG.11298Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11298.4.p2.exon1MSTRG.11298.4.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon2MSTRG.11298.4.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon3MSTRG.11298.4.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon4MSTRG.11298.4.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon5MSTRG.11298.4.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon6MSTRG.11298.4.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon7MSTRG.11298.4.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon8MSTRG.11298.4.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon9MSTRG.11298.4.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon10MSTRG.11298.4.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon11MSTRG.11298.4.p2.exon11Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11298.4.p2.exon12MSTRG.11298.4.p2.exon12Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11298.4.p2MSTRG.11298.4.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:853929..861702 +