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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000081_pilon:465328..470757+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11278.1.p1 ID=MSTRG.11278.1.p1|Name=MSTRG.11278.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5430bp|location=Sequence derived from alignment at sc0000081_pilon:465328..470757+ (Clytia hemisphaerica_ch_hm2_pilon)
cctacctgggactcgtggaggttaaaaaaggtaccctgaccagcggagca
tccccgtaacccatcttgccctagtaccccccccggggattTTCTTTAAA
ACCACAAGACCAAACAAGAAATTAGATCATAAACTGCAGAAATTAAATCA
GGCTCagaatatttattttacttCCTACGAAGGATTGATAGCTTGAAAGT
TATGGCTGTAAAGTAAACAAGAAGgaagaaatcgaaagtaaacaaaaaaa
aaaaaaaaaacagagaaaatgGATGGCATCTTTGGGAGAGTATTTGGCCC
ATGTTTTAGGGGATGGATTCAACCAGAGCAAACAAACGGAAATAAGTATA
TTGATTATGCACCAAATAGGAAGTGGTAAGTTATGTCTGGTTGGTCTGAT
CGTTTGTCTTGTATCATTGTCTTTCTTCCCCACCACCCACCACATGTCTG
CAGTCTCCagaaattcattttcaaattttcaacttttagtaCCTTCTGAT
CTGTGATTTGTCCTTGAAATTGATGCTACTTAAAAAGCTTGACAGCTCAG
TGAAAGTTATAGTTATAGACATTTTGTGGGTCAAGTTTcaatcaaaataa
cttttatttgtctgtttgaagaaaaatgattttaacaAGTTTAGTCATCA
CTCACctttttgtttctgttttgTGTTATTGTTAGAGTAATCACATCAAC
TAGTTTTGATTTTGTAGGAAATATGATGACAAGAATTTGATCAAAGAACT
CACTAAAGATCAAGTCAACTCCTGGGATGTCATGGATCTAAATGGTgagt
gaattttatttttttcagttttagtCGATAATAAATCAAGAAGGAAGACT
GTACGTTGCTGTTCTACCTTTATTGGATTTAGTTTTGAAGAGACATTTTG
AGGTCAAAATATATTAAACAaaggttttttcaaagtttttgtgCAACTGG
GAAATTGATCGTATATATTGGGGACCGTTaccaaaaatgttttccttttt
ttaaccgTTCAACTGTTTAAACAGGAGAGAGGGAGGCTGGTgatcaagaa
aaaaagaaatccaGATCATTGGAAGAAAAGCTTTAAAATACTAGGAATTT
TCACCAATCCACCACTTTGCTATACTTTCACGATCGTGAAGAAATGTTTT
GTCCCACAACTAAAATTCACAAATTTTCCTCTCTGCCCTCATAATAAGAC
CTTTTCTTTTCCTAATATATAGTCATTTAGGAGAACACAACAGTCTATTT
TAACAAGTTAATCCAGCCAGTACAAACAGAATAAATCATCTTGTACTTAG
GAGTTGTGTTGTAATTGATATTACGTTACCATTAAACAAATTTCTGCTGG
AGTCATTCAAAAGAACGCTGCGTTCCCCCAAGCAACTATCGTAATGTAAT
GTCATGTTGAACGGTTATAATATACTGCAGTAATTAAGACAACATAAAAC
ACCGACGTATGATTAATAAAAGTTTGTACTACTGTAAATTTCATATATAT
AGATACAAACACAGGAACGAAAGAGCAGTTATtggattttaaaataattt
tggcgcaaattcatcaaaataacctttttttataattttcaaaaatccac
cTCTAATTAACTAACTAGACAGGAGAACttgtctttttatttaaaaatct
gatgtatactTGACGGGTCGGAGCTGTGAGTCCATTTTTagactcaaaaa
caaaatagctCATTTTCTTGCTGGACTCACttgctgaagaaaaaagtttt
ataattttaaaaagtttttccgaaagTGAGCGTAGTAAACCCCGGCACAA
AGAAACGTTTTGATTGGCAGATTCTTATCAAAATATCAGCCCCGACCATG
CTtttcatttcgccatcagtatataaataagaaatcatagcatggatctc
caggagTGCTAATTAACTTACAAAAAGGCTCATTTATGAGGCCCCCAGca
gtttgcgtgatggcgtgattgggacttttttcttgcgtgatggcgtgatt
agagattttttttggcatgatggcgtgatcaagatttcggcgtgatgcgt
gatagggcaaaaatttgaggcgtgatgcgtgatttgggctatttttgcta
ttttttgtgtgatgacaaattttggcgatttttgtgatgcgtgatggaga
ataTCTTTTTGCATGATgtcgtgattaggggtgccgctgggggagCCTCA
TTTATAGCTCtccttgaaataaaaaaaatgtgttactgtacttgccaaaa
taagttttgctagaatttaaaaatttagttTCCTTAAAAGCTTTATgctt
tgttcttttaaaaaagacaAGGCATATTCTGTATTAGGCTATGTACATCC
CCAagattgattttgatatatgGGATGCGTATGGTGTATAATATTCACGT
CCAAGAGTTAGCCCAGTTGgggtaacctgtttcaatttaTAGTGAGTCCA
GAAGATTGACAATTTCACATATTCAAGTTATGGTGTAATAATTGTCTGTG
ATTTAATTTTTGCTCTgctttttttactaaaaacAaaATTGCAATGACAA
TATACTccacaaaaacacaaagacaAGGTAACCCTCCAGACATGATATGC
ATCCATAGGGGATGTCATCAAAACATATCCTAGAGAGAATGTGAAATAAT
TGTGATGTGAAAAGTAAAACCTGTCTTGAATATTAAGGGATCTATGTAAA
ACGTTAGTATAAGCAAACTTGTTTTACCACTATGAATTAGGGAGCTCAGA
TCAATGTTGTCATTTAATAAGAAGTTGTTTTCTGTGCAATTCACAGCAGG
AATTATTTGCAATCAACAAAATAAGGGTTTTTAAAAAGATAACTTGTTAT
AATACTTGGTTATCCTTTTAATGATTCTTCATAGtcaattatttgaaaat
tttcaagtttattgTTTTTTCCTAATGAGAATGCCATTAACAATAAAAAA
CTAGCTTCTATAGATCTTGGTAATAATTTTTCTGGCCTTTGATAATAAAa
ctgttttattgaaaataggTTATTGTTTACCAAATTTGTTTACAACTTAG
CTAATTATAGTTTAGATCTCTTTGGAAATACTTCAAGTTTAAACCCTTTA
CAACAACATGGTCATGCCAGTGtataattggaaaaataaatattaaaatt
ttgttgaaattcaattatttcaaaaatattttttagaagaTGAAGATTTA
GATGTTAAAATTGCTTCCAATGGGAAATTACAACTTCATGACAATGTCTT
CATAAAGTAAGTTACAAATTACACTAGCTTTTTGAACTGCTAattctaca
cgcttttttataagaaccagtaagttTTGGTATAGGCTGAACTGATctta
atctttttaatttttcatgcaTAAAAAGTTCTTACGACGTTGATATGCTT
AGCTATCACATGGtagatataaaataaaatttattaaaacttATGAATTT
ACTTTTGACTATTTTTGCATCTTTATCAGTCCACTCAGTACCAATGAAGA
GGACAACAACAATGCCAACAAAGAGAAGGATGAAGCAGAAACAAGAGATG
GTGTAACTGGCGAAGTCAACCCCGTGAATGAAGAGTCAGAACAATCATTA
CAGAATGCATCTTCTATTGAGGAAGATGTTACATCAAATAATAAAGGCAC
TAGTGAAAATGATGGAGGGACCACTGATGTTGAATCTTCAATAGAGATGA
CTGTTAATGCTAAAGGTGGGTCAGAGGATATCTCTTCAGGGAGTTCTGCT
GAAGAAGCAGTTGTCATTGATGAGGAAGTGAAACTAGTTGTCGAGGAAAA
GGAAGAACCTGAATAGAGCTTAGACAAATTATGATACTCTACATATCTGA
TTAAAGTTCTAAGGTTTTTGTTGGATACAGATTGGCAAAATGATATTGGG
GTTGTTAAGATTTTGAGGAGGTTGTTTCTCGAAATGATGTGAAGCCTCCT
TCTTCATGTGATTGTTCCAGCTTGTTCTGCTGCCCTATAAATGAGAATTA
AAGTctaacttttcaaaataaataaacagacGATTGAAACCTTTAAAACA
GATGCGAAGAATGAGGCACATGGTGACAATAATCAAGGTTTTAAACAATT
AAGTGTCAAATACTGAGACGCTCTATTTATTGGTTATGTAAGATTGAAGA
AACTAGTTTAAATCAACAGTATAGTAAATTTTAGACTAAAATAATCTACC
Ttattggaagaaattttggcgggaatttaatttggcggatggtcaaaaaa
gctttttcagagggaatttaatttggcaaattgctgaaaaattaaatttg
gtaggaatttaatttggcggatgaacgATATTCTTGTCAAAAAACGCCAT
TGAATAAGAAAAACCTGCgtaaggcctgaaatagcacacattttggggga
ataaatatagtaatttaaatttggcggatggtggaAAAATTAAGTTTGGC
AGATTTTGACCaattccgccaaattttctttccgccaaaattttttcGCT
AAAGGTATTATTTATTGCAAGAAGAGCCTTCAAAAGGCtttttttcttgg
tggttatatttttcattatttttattggaaggaatatattattatcaatt
atttttttacacaaTGATACCAGTAAATTAatctgaaattaaatttttcc
agTACCGATCCCTATTAAGACAATTTGTGTACTATGTCTTAGaattatat
tttgcaatttattattttgctataatttaataacaattattgattatGGT
ATAGAGTATTTATATCGTTTTGGTGTGGTTGGGAATGTCAGTATTTATTC
ATTGATTTTGATGCAAAAAGGGACACAAAAGATGCAgtgggatacaaaat
caaacggTCACATAAAttgtcaaaacaaaattaatatagccgactttgaa
tttttctattaaGTATTATATTGCAAGTTTGTTTAGAGGCTTGATTTATG
AAACTTATTGTTTAAATTTTAGTACTCTTATGTTCTAATTGACACAATTG
TCTATCATAAAACGACTGTACATTAAGCCAAAAGTTATGCCTATATcacg
aaattttgaaatgtttcccagtttAACTCTAAAGTTTTGGTAGTTTTCCC
TAATTTTACAGCCTCATTTTTCCCAGCGTACTATCTTTCTGGTTGACCGG
TAGATTGAATACCATTTGTTTTGTCAAACTTTTTAACAGTTTAGAATGAT
ATTTAGAAAAAGAggaatttctttgttttgtatataatattgacctggaa
ttttttgtttatttgtttgtttgttatttttttagtatttatttgtttct
ttcatTAAGTAATATCTGTATATATTGCAACAATTTtaggttttgaaaat
attacaatAATAAATTGAATCTCGAAATTTTAATTAAGCAGAAATAATAT
AATTCTTCTCACGATATATTTAAGataaaa Coding sequence (CDS) from alignment at sc0000081_pilon:465328..470757+ >MSTRG.11278.1.p1 ID=MSTRG.11278.1.p1|Name=MSTRG.11278.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0000081_pilon:465328..470757+ (Clytia hemisphaerica_ch_hm2_pilon)
atgGATGGCATCTTTGGGAGAGTATTTGGCCCATGTTTTAGGGGATGGAT
TCAACCAGAGCAAACAAACGGAAATAAGTATATTGATTATGCACCAAATA
GGAAGTGGAAATATGATGACAAGAATTTGATCAAAGAACTCACTAAAGAT
CAAGTCAACTCCTGGGATGTCATGGATCTAAATGaagaTGAAGATTTAGA
TGTTAAAATTGCTTCCAATGGGAAATTACAACTTCATGACAATGTCTTCA
TAAATCCACTCAGTACCAATGAAGAGGACAACAACAATGCCAACAAAGAG
AAGGATGAAGCAGAAACAAGAGATGGTGTAACTGGCGAAGTCAACCCCGT
GAATGAAGAGTCAGAACAATCATTACAGAATGCATCTTCTATTGAGGAAG
ATGTTACATCAAATAATAAAGGCACTAGTGAAAATGATGGAGGGACCACT
GATGTTGAATCTTCAATAGAGATGACTGTTAATGCTAAAGGTGGGTCAGA
GGATATCTCTTCAGGGAGTTCTGCTGAAGAAGCAGTTGTCATTGATGAGG
AAGTGAAACTAGTTGTCGAGGAAAAGGAAGAACCTGAATAGatgGATGGC
ATCTTTGGGAGAGTATTTGGCCCATGTTTTAGGGGATGGATTCAACCAGA
GCAAACAAACGGAAATAAGTATATTGATTATGCACCAAATAGGAAGTGGA
AATATGATGACAAGAATTTGATCAAAGAACTCACTAAAGATCAAGTCAAC
TCCTGGGATGTCATGGATCTAAATGaagaTGAAGATTTAGATGTTAAAAT
TGCTTCCAATGGGAAATTACAACTTCATGACAATGTCTTCATAAATCCAC
TCAGTACCAATGAAGAGGACAACAACAATGCCAACAAAGAGAAGGATGAA
GCAGAAACAAGAGATGGTGTAACTGGCGAAGTCAACCCCGTGAATGAAGA
GTCAGAACAATCATTACAGAATGCATCTTCTATTGAGGAAGATGTTACAT
CAAATAATAAAGGCACTAGTGAAAATGATGGAGGGACCACTGATGTTGAA
TCTTCAATAGAGATGACTGTTAATGCTAAAGGTGGGTCAGAGGATATCTC
TTCAGGGAGTTCTGCTGAAGAAGCAGTTGTCATTGATGAGGAAGTGAAAC
TAGTTGTCGAGGAAAAGGAAGAACCTGAATAGatgGATGGCATCTTTGGG
AGAGTATTTGGCCCATGTTTTAGGGGATGGATTCAACCAGAGCAAACAAA
CGGAAATAAGTATATTGATTATGCACCAAATAGGAAGTGGAAATATGATG
ACAAGAATTTGATCAAAGAACTCACTAAAGATCAAGTCAACTCCTGGGAT
GTCATGGATCTAAATGaagaTGAAGATTTAGATGTTAAAATTGCTTCCAA
TGGGAAATTACAACTTCATGACAATGTCTTCATAAATCCACTCAGTACCA
ATGAAGAGGACAACAACAATGCCAACAAAGAGAAGGATGAAGCAGAAACA
AGAGATGGTGTAACTGGCGAAGTCAACCCCGTGAATGAAGAGTCAGAACA
ATCATTACAGAATGCATCTTCTATTGAGGAAGATGTTACATCAAATAATA
AAGGCACTAGTGAAAATGATGGAGGGACCACTGATGTTGAATCTTCAATA
GAGATGACTGTTAATGCTAAAGGTGGGTCAGAGGATATCTCTTCAGGGAG
TTCTGCTGAAGAAGCAGTTGTCATTGATGAGGAAGTGAAACTAGTTGTCG
AGGAAAAGGAAGAACCTGAATAGatgGATGGCATCTTTGGGAGAGTATTT
GGCCCATGTTTTAGGGGATGGATTCAACCAGAGCAAACAAACGGAAATAA
GTATATTGATTATGCACCAAATAGGAAGTGGAAATATGATGACAAGAATT
TGATCAAAGAACTCACTAAAGATCAAGTCAACTCCTGGGATGTCATGGAT
CTAAATGaagaTGAAGATTTAGATGTTAAAATTGCTTCCAATGGGAAATT
ACAACTTCATGACAATGTCTTCATAAATCCACTCAGTACCAATGAAGAGG
ACAACAACAATGCCAACAAAGAGAAGGATGAAGCAGAAACAAGAGATGGT
GTAACTGGCGAAGTCAACCCCGTGAATGAAGAGTCAGAACAATCATTACA
GAATGCATCTTCTATTGAGGAAGATGTTACATCAAATAATAAAGGCACTA
GTGAAAATGATGGAGGGACCACTGATGTTGAATCTTCAATAGAGATGACT
GTTAATGCTAAAGGTGGGTCAGAGGATATCTCTTCAGGGAGTTCTGCTGA
AGAAGCAGTTGTCATTGATGAGGAAGTGAAACTAGTTGTCGAGGAAAAGG
AAGAACCTGAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081_pilon | genome | sc0000081_pilon:465328..470757 + |
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