MSTRG.11276.1.p1 (mRNA) -

Overview
NameMSTRG.11276.1.p1
Unique NameMSTRG.11276.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:449742..453824-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11276.1.p1 ID=MSTRG.11276.1.p1|Name=MSTRG.11276.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4083bp|location=Sequence derived from alignment at sc0000081_pilon:449742..453824- (Clytia hemisphaerica_ch_hm2_pilon)
GCATGCAATAAAACAGGAAAAAAATCGAAAAAATTAACTTGAAATTTAGC
GTGAATTTTAATAATTTTAGAAGAATTCACGAATGTATAGAAACATCACA
AATCCTGAAGACGCATGTCGTTTTATGCTTTCTTTGAGTCACGTGACAAC
CAGTCATGGCAAATTGGAACTTTCATTCTACATCATCATATTTTTATTGA
TTATGTTTTCGAATATTACATTGATTTATGGACTGGTTAAAACAAAAGAA
ATCAAAACAAATACGGCCAGGTATGTATTTTCAAAATTCCTTTTTAGCGT
CCATTTGTGATTTTAGCTAAAGTTATAGCTACAGGTGACCCTCGCTAATT
CGAACGGGGAAATCTCATTTGTTCGAATTGCAGAGAGATTCAAAGTATAG
AGAGTTTTTCAAGAGAGTTTCTCCATGACTGGAAACAAGCTCGAAAATTA
TAGAAAGACTCGAATAATAGAAGTTCGAATAACTGAGAGTTTACTGTATA
TCTGCTACAATGTAAAACCTATAAGGATCTCTACATAGTAACAACTGACT
TTAGCTAAAAATCCCAACTTGAGCACGAATCTCCTTCCTCCTTCCAAAGG
AACTATTGGACTATAGAAGCAAAGGTATGTAGCTGTTCAGGGTTCCTTTT
GTTCGTCTCGCCGTATGAGGTCCATGGGTCAATAAAAAAAAAAATAAAAA
AAAAAATAAGTTCCTTGAAAGAGTATTGTCAGTTGAAAGTAAAATTCTAA
TAACTTTTAGTAAGTTTAACTGCTGAAGATTTTTGATTGTTATCTACCAT
TTTAGACTTCTGACTGCACTTAGTATTGGTGACCTCTTAACCGCATTGGT
GCACATACCAACACATATCACCTTCACACATCTCCAGCGTAAATCATGTA
TTGGCTACAGTATGGAATCCTTCTTCGCTGTTTTCCTTGGTAAGTTTTAT
ATAATCTTTATTTCCAAATTCCCAGCCTAAATGTTCTTACAAACTGGGTC
AGTCTCAAAAATGATTAGACACTTTACTTTAATGACAATAACTCAGATTT
ATGCCATGTTAAAAAGTTGTACACCGTTAGAAAGAGACTCTTTAGAAGAA
TTATCATAAAACCGAAAACTAGAGAAGAAAATGAAGATTTTTTCTTATGT
TTCAAGTGCTTGGCGTAATGTTTGCATTTTACTGCTTTAATGAATGTCCC
TTTGGCTATCACTTTCAAAACATTAATTTGTAGGTACATCTGCTACGATT
ATTACTTCAGCAATGTGTCTTGATCGCTACCTCTTCATCAGCCGCCCTTA
TAAACATCCCAAAACAGGAACATCGAAATATCTGGTGATAGTTTATTTGG
TCCTGGCATATTCAATATCGTTATCTTTGGCTATTTCAGTTGTGATCGTT
GCACTTAGTGATTTCGGGTAAGGTATGATTGATTTAGACAGGCTATCGTC
CTTTAGAAGAATAGGAAACCCGGAGTTTACTTCCAAAGCAAAGTATGGTT
TGAATATTAGCCTATTTCATAGGATTCGTGATTTTGGTAAATTATATTTT
TCTACGTCACTGCAGTTAGGAGGGCATACGAGGGTCCTGAACACTGAAAT
ACCTACAGTCTTTCACAAAATCACCACAATACCGACACATTGTTAACGGA
ATACCGACAGCAAAATTTTTTCATGTTTTTTTTCAAAATTCTACATGAGA
TAAGAGGATAAGAGGGATTTCTGAGAAATAGCACTTGATTCAGCACCGTT
TCTCCAACGTTTTAAGCACAATTATCGTATCACCGATCGAAAATTTAACA
TTTTCCGTCACCGAAAAACATCTCAAACACCGAAATACGGACTTTTTGTT
GATCACCGAAATACCGAAGTAGAAAAAGGTCAATACCGACACACCGACAA
ACTGGTCAAGCTCTCTTTTGCGCATTGAAATAAGCACGAATCCTATGGAA
TAGGCTAATCATTAGCTTTGGATACGAATTGAATCTTTTGAGAATTGAAT
TGAGACTTTCTTTATCTTCATTTTTGCGTGACAATTCTTTTCGAAAGCTG
GCGTTAAATCTTTCAATACACCTTTTCGACCGTAGTCGCGCGGGAATCTT
TTAGTCCGCTTTATCCCACTAACACCGTCCCAATCCTTTTTTGACGCATT
TTTCTATTGTCTATTGGTGCGAAAAGAGGACTGCGACGGTTTTAGTGTTA
TAAAGCGGACAAAAAAATGCCCGCGCAGTAATGAGTGGCTACGGTCGAAA
AGGTGTATCCAGCGCTTTTGTAAAAATCACAAGGGACGCTCAAGTTATAC
AGGAAACAAATGGCTTCAAATCATTACTGAGGAGATTCGCCTTTAGTTTT
CGGTTTTGTCTAATTTGTCCTTTCATCTTCTGCCTGGCCATCTCCTTTTT
AGATTTCGACTTGCTACCATTTTTAACATCATATCAAGCACAATATACGT
GTTAATACTTTTAACATCTTTGGTCGTCAATACTTTATTGTATTCTTACA
TCCGAAATCAAACAAAAGAAATTAAGAGGTTATCCAATTCTCACATCCAA
CAGAGGGGGTGAGTAGTTTGAACTATGTATTTCTTAGCAGAATGTTCACA
TGTTACTGTTCCGTTTCGATCCGGTATGATTTTTGTTACGGATCAAGTGT
GTTCATACGGAACGTTTTGGAGCATTTCGGAGAAAGAAAACGGAGCAGTT
TCGTTCCGATGAAAAAAGTATAGCGAAAGCTTTTCTATCTGTTTTGCTTT
GCTGTCTTCTTTTTTGGAGTTTCGAATTTTGACGTTCGCACTTGTTTTCG
GAACCGTTTTGTTTCGGAACGGAACAGAACCGTAACTGAGCCGTACTGAA
CAATGGCCTTAGCTGAATGTTATTTGCACTTTGGATGAAGAAAAATGAAC
AAGGTTTTTTACTTTTTCCTGTTCTAAAGCATTTTTGGATTCTTTCAGAT
TTCTCAATCCGACAGCTATGGTAACTTAACGAAATTAGCCTGCTCGATTT
ATGGCATATTAACAGTTTTGATTAGATACCTTAAGGAGCCTCTTTTTGAC
GAACATGAACATTTTGATTGAAATGGTATAAAAGCTAAATTTGTCTCTTT
TGGAAAATAAACCATGTCTACATACGTACACTCTCCGAGCGCGCGTCATT
TATAGGCTATGGAGACTCAGTTTTCGATAGGACTTATATTTCGACACTTT
TCAGCTGTATGAAAAAATTTTGCCATCATTAGGATAGACCTTTTCATGAA
TTACGTTAAGGCCGGTCTCCGCTTTGCGTGCGCTGCGATCGCAACTTTGG
CTTCAATCATTTTTGCTTGGAGAAAAGATTACGTCATAAAAACGCAGCGC
GCGCTTGGAAAAAAAGTTGAATGTATTTCAACTTTGTTTTCAAGCACGCG
ATCGTTACGTCATATCGCATCAATGGAGTTGCTTCATTTTTTTTTTGACC
AATAGCGTGGAAGCTTTGCTCGAAGAAGAGCGATTGCAGCGCGCGCAAGT
GGAGACCGGCCTTTGCGAAGAACACTTACAGTACCTCGTTTTTGATATAT
TGCTATGGTAATTGGATTTTTTTTTCGTAACAATTAGCGGGGAGGACGTC
TATTCGGGAAGACAAGAGTAGGCTCTATTGATAAAAGTAACACTTGAAGT
CTCAAGGGATATAACCATCTTGATGGTAGTGGTTTCAAAACGAGGCAGTC
GTTGCACTCAAAATAATTTATGAAAATGCCTATTGTTATAGTTAGGTAAT
GAGACACGGGTGTAAAATTTTTTCTCTTTTTCGAAATTCCAGGTACAAGA
GGAAGGCTACCAAAACTGTACTTATTATCTCCATCATACAAATTTTCACA
ATCACACCATGGGTTATCTCCTTAATTTACATGACAGTAGAGTTTGGAGA
AAAGAAGTATTTAGAATATATGGATACCATTTATTACGCTCATGTCTGGT
TGAGAATGCCTGTGTTTTTAAATTCATTTTTTAATACAATTATTTTCATG
TTTAGAAATGAAAAACTTGTAAAATTTTATAAAATCATAGTACGTAAATA
TATTTGCTTGCATAGCTAAAATCTTTCAATTTT

Coding sequence (CDS) from alignment at sc0000081_pilon:449742..453824-

>MSTRG.11276.1.p1 ID=MSTRG.11276.1.p1|Name=MSTRG.11276.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4695bp|location=Sequence derived from alignment at sc0000081_pilon:449742..453824- (Clytia hemisphaerica_ch_hm2_pilon)
GTACAAGAGGAAGGCTACCAAAACTGTACTTATTATCTCCATCATACAAA
TTTTCACAATCACACCATGGGTTATCTCCTTAATTTACATGACAGTAGAG
TTTGGAGAAAAGAAGTATTTAGAATATATGGATACCATTTATTACGCTCA
TGTCTGGTTGAGAATGCCTGTGTTTTTAAATTCATTTTTTAATACAATTA
TTTTCATGTTTAGAAATGAAAAACTTGTAAAATTTTATAAAATCATAGTA
CGTAAATATATTTGCTTGCATAGCTAAATTTCGACTTGCTACCATTTTTA
ACATCATATCAAGCACAATATACGTGTTAATACTTTTAACATCTTTGGTC
GTCAATACTTTATTGTATTCTTACATCCGAAATCAAACAAAAGAAATTAA
GAGGTTATCCAATTCTCACATCCAACAGAGGGGGTACATCTGCTACGATT
ATTACTTCAGCAATGTGTCTTGATCGCTACCTCTTCATCAGCCGCCCTTA
TAAACATCCCAAAACAGGAACATCGAAATATCTGGTGATAGTTTATTTGG
TCCTGGCATATTCAATATCGTTATCTTTGGCTATTTCAGTTGTGATCGTT
GCACTTAGTGATTTCGGACTTCTGACTGCACTTAGTATTGGTGACCTCTT
AACCGCATTGGTGCACATACCAACACATATCACCTTCACACATCTCCAGC
GTAAATCATGTATTGGCTACAGTATGGAATCCTTCTTCGCTGTTTTCCTT
GATGTATAGAAACATCACAAATCCTGAAGACGCATGTCGTTTTATGCTTT
CTTTGAGTCACGTGACAACCAGTCATGGCAAATTGGAACTTTCATTCTAC
ATCATCATATTTTTATTGATTATGTTTTCGAATATTACATTGATTTATGG
ACTGGTTAAAACAAAAGAAATCAAAACAAATACGGCCAGGTACAAGAGGA
AGGCTACCAAAACTGTACTTATTATCTCCATCATACAAATTTTCACAATC
ACACCATGGGTTATCTCCTTAATTTACATGACAGTAGAGTTTGGAGAAAA
GAAGTATTTAGAATATATGGATACCATTTATTACGCTCATGTCTGGTTGA
GAATGCCTGTGTTTTTAAATTCATTTTTTAATACAATTATTTTCATGTTT
AGAAATGAAAAACTTGTAAAATTTTATAAAATCATAGTACGTAAATATAT
TTGCTTGCATAGCTAAATTTCGACTTGCTACCATTTTTAACATCATATCA
AGCACAATATACGTGTTAATACTTTTAACATCTTTGGTCGTCAATACTTT
ATTGTATTCTTACATCCGAAATCAAACAAAAGAAATTAAGAGGTTATCCA
ATTCTCACATCCAACAGAGGGGGTACATCTGCTACGATTATTACTTCAGC
AATGTGTCTTGATCGCTACCTCTTCATCAGCCGCCCTTATAAACATCCCA
AAACAGGAACATCGAAATATCTGGTGATAGTTTATTTGGTCCTGGCATAT
TCAATATCGTTATCTTTGGCTATTTCAGTTGTGATCGTTGCACTTAGTGA
TTTCGGACTTCTGACTGCACTTAGTATTGGTGACCTCTTAACCGCATTGG
TGCACATACCAACACATATCACCTTCACACATCTCCAGCGTAAATCATGT
ATTGGCTACAGTATGGAATCCTTCTTCGCTGTTTTCCTTGATGTATAGAA
ACATCACAAATCCTGAAGACGCATGTCGTTTTATGCTTTCTTTGAGTCAC
GTGACAACCAGTCATGGCAAATTGGAACTTTCATTCTACATCATCATATT
TTTATTGATTATGTTTTCGAATATTACATTGATTTATGGACTGGTTAAAA
CAAAAGAAATCAAAACAAATACGGCCAGGTACAAGAGGAAGGCTACCAAA
ACTGTACTTATTATCTCCATCATACAAATTTTCACAATCACACCATGGGT
TATCTCCTTAATTTACATGACAGTAGAGTTTGGAGAAAAGAAGTATTTAG
AATATATGGATACCATTTATTACGCTCATGTCTGGTTGAGAATGCCTGTG
TTTTTAAATTCATTTTTTAATACAATTATTTTCATGTTTAGAAATGAAAA
ACTTGTAAAATTTTATAAAATCATAGTACGTAAATATATTTGCTTGCATA
GCTAAATTTCGACTTGCTACCATTTTTAACATCATATCAAGCACAATATA
CGTGTTAATACTTTTAACATCTTTGGTCGTCAATACTTTATTGTATTCTT
ACATCCGAAATCAAACAAAAGAAATTAAGAGGTTATCCAATTCTCACATC
CAACAGAGGGGGTACATCTGCTACGATTATTACTTCAGCAATGTGTCTTG
ATCGCTACCTCTTCATCAGCCGCCCTTATAAACATCCCAAAACAGGAACA
TCGAAATATCTGGTGATAGTTTATTTGGTCCTGGCATATTCAATATCGTT
ATCTTTGGCTATTTCAGTTGTGATCGTTGCACTTAGTGATTTCGGACTTC
TGACTGCACTTAGTATTGGTGACCTCTTAACCGCATTGGTGCACATACCA
ACACATATCACCTTCACACATCTCCAGCGTAAATCATGTATTGGCTACAG
TATGGAATCCTTCTTCGCTGTTTTCCTTGATGTATAGAAACATCACAAAT
CCTGAAGACGCATGTCGTTTTATGCTTTCTTTGAGTCACGTGACAACCAG
TCATGGCAAATTGGAACTTTCATTCTACATCATCATATTTTTATTGATTA
TGTTTTCGAATATTACATTGATTTATGGACTGGTTAAAACAAAAGAAATC
AAAACAAATACGGCCAGGTACAAGAGGAAGGCTACCAAAACTGTACTTAT
TATCTCCATCATACAAATTTTCACAATCACACCATGGGTTATCTCCTTAA
TTTACATGACAGTAGAGTTTGGAGAAAAGAAGTATTTAGAATATATGGAT
ACCATTTATTACGCTCATGTCTGGTTGAGAATGCCTGTGTTTTTAAATTC
ATTTTTTAATACAATTATTTTCATGTTTAGAAATGAAAAACTTGTAAAAT
TTTATAAAATCATAGTACGTAAATATATTTGCTTGCATAGCTAAATTTCG
ACTTGCTACCATTTTTAACATCATATCAAGCACAATATACGTGTTAATAC
TTTTAACATCTTTGGTCGTCAATACTTTATTGTATTCTTACATCCGAAAT
CAAACAAAAGAAATTAAGAGGTTATCCAATTCTCACATCCAACAGAGGGG
GTACATCTGCTACGATTATTACTTCAGCAATGTGTCTTGATCGCTACCTC
TTCATCAGCCGCCCTTATAAACATCCCAAAACAGGAACATCGAAATATCT
GGTGATAGTTTATTTGGTCCTGGCATATTCAATATCGTTATCTTTGGCTA
TTTCAGTTGTGATCGTTGCACTTAGTGATTTCGGACTTCTGACTGCACTT
AGTATTGGTGACCTCTTAACCGCATTGGTGCACATACCAACACATATCAC
CTTCACACATCTCCAGCGTAAATCATGTATTGGCTACAGTATGGAATCCT
TCTTCGCTGTTTTCCTTGATGTATAGAAACATCACAAATCCTGAAGACGC
ATGTCGTTTTATGCTTTCTTTGAGTCACGTGACAACCAGTCATGGCAAAT
TGGAACTTTCATTCTACATCATCATATTTTTATTGATTATGTTTTCGAAT
ATTACATTGATTTATGGACTGGTTAAAACAAAAGAAATCAAAACAAATAC
GGCCAGGTACAAGAGGAAGGCTACCAAAACTGTACTTATTATCTCCATCA
TACAAATTTTCACAATCACACCATGGGTTATCTCCTTAATTTACATGACA
GTAGAGTTTGGAGAAAAGAAGTATTTAGAATATATGGATACCATTTATTA
CGCTCATGTCTGGTTGAGAATGCCTGTGTTTTTAAATTCATTTTTTAATA
CAATTATTTTCATGTTTAGAAATGAAAAACTTGTAAAATTTTATAAAATC
ATAGTACGTAAATATATTTGCTTGCATAGCTAAATTTCGACTTGCTACCA
TTTTTAACATCATATCAAGCACAATATACGTGTTAATACTTTTAACATCT
TTGGTCGTCAATACTTTATTGTATTCTTACATCCGAAATCAAACAAAAGA
AATTAAGAGGTTATCCAATTCTCACATCCAACAGAGGGGGTACATCTGCT
ACGATTATTACTTCAGCAATGTGTCTTGATCGCTACCTCTTCATCAGCCG
CCCTTATAAACATCCCAAAACAGGAACATCGAAATATCTGGTGATAGTTT
ATTTGGTCCTGGCATATTCAATATCGTTATCTTTGGCTATTTCAGTTGTG
ATCGTTGCACTTAGTGATTTCGGACTTCTGACTGCACTTAGTATTGGTGA
CCTCTTAACCGCATTGGTGCACATACCAACACATATCACCTTCACACATC
TCCAGCGTAAATCATGTATTGGCTACAGTATGGAATCCTTCTTCGCTGTT
TTCCTTGATGTATAGAAACATCACAAATCCTGAAGACGCATGTCGTTTTA
TGCTTTCTTTGAGTCACGTGACAACCAGTCATGGCAAATTGGAACTTTCA
TTCTACATCATCATATTTTTATTGATTATGTTTTCGAATATTACATTGAT
TTATGGACTGGTTAAAACAAAAGAAATCAAAACAAATACGGCCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11276MSTRG.11276Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11276.1.p1MSTRG.11276.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11276.1.p1.exon5MSTRG.11276.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11276.1.p1.exon4MSTRG.11276.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11276.1.p1.exon3MSTRG.11276.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11276.1.p1.exon2MSTRG.11276.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11276.1.p1.exon1MSTRG.11276.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:449742..453824 -