MSTRG.11268.1.p1 (mRNA) -

Overview


Name	MSTRG.11268.1.p1
Unique Name	MSTRG.11268.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:389024..394883+
coding sequence from alignment at sc0000081_pilon:389024..394883+

mRNA from alignment at sc0000081_pilon:389024..394883+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.11268.1.p1 ID=MSTRG.11268.1.p1|Name=MSTRG.11268.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5860bp|location=Sequence derived from alignment at sc0000081_pilon:389024..394883+ (Clytia hemisphaerica_ch_hm2_pilon)
aaatcatataaattaaaCTTTTAGTAAATTCTAAAAAGCATTTTCTGTTG
gtatgatttttataatttttttgagttatTCGACATTTTATATGGTCTAT
TCACAAGATGGGCAATATTTTGGCGTCACAGACAACATGAAAATTCTTGT
TGATCAAAATTCAGTATTGGATACTTTAACAGCAGattcaattttgattt
gttcACATCGTTGTCAGTTACATAGTGAATGTAAGAACGCCAATTATATG
GCAGAAACTGGTGAATGTCAATTACTAGTGGAAATTGACGATCGTGATAT
CAATCAACAATCCGAAGACGCCGAAGGATTCATCAAGCTGACAAAGGTAT
ATCAATTTCTTTCATATCGGTGCAAACagaaattaaaggttttatacTAT
ATGCCTATCAAATCAAACATAGTCCCTTTCCTTTAAAAAACCCTGATTTG
GTAACTGCTATTGTGGAAGCTTCTTCTTCCTCAATTGAcgcagtttttga
tcacgttaccaaatactCCGCATGGGATTGGTTCGAAACTTAAACACATG
ATgaaaaaagtgagcaaaacaaactggTTTCTCAAGGCAAGTGTAAGTTA
AAACCATAGTTAATCGTAGAAGGAAAATAATAgacttccagaccggggtt
ttttatatgGACTTTGATTCAAATGAAGACAATTCTAACTAGATTAAGTT
TCTAGATACCCTGGTGAAACCCGGCCCCGTTTGCCAAAATTTTATCATCG
TAGGAAAAGATACCCTGCAATATCAGCCCCAcaggaaaattgactttgat
ttcatccacaTTGAAAATTCGATTTAaagaattgcactccaaaaccatcc
caactTGAATTTTTAGCTTTGAAAGAATAGAATTTATccatactcttagg
tgccaaataccccccccccccccgcttgttaatttttcgaaaattctcct
accccccggaccttattaggacccctccccatttatcaacttttaagaat
attttcagttagcAAGAAGAAGTcgccttattttgctccaaaaggcctga
ttttagcctatatttaccttatttttgggtttgcAGAAGTACAAtctcca
accccccggcaattaggtcgcCCCTtccctgtttatttggcacctaaaaG
TACTCATGCTCTTGGAAAAACTTCTAACGGGGTATCGGAACAGATTTATG
ATATTatcaaattctttatttttttgacagtttCAATGCAGTTCGGATTC
TTCTGAAGATACCGAAAGTTCTTCTTCAAATGGAATCACCAAAACAGATG
ATAAAGTTTCTTTTACATCAGGTGTGTAGAGTATCCATGgtcttgatttt
tcaaaaacttgaaacCCTTTTTTCATACACACGGTGACACGCCTATATTT
AGATACTATAAGACACTGCCAGTCTCCAATGGATTTGAAAATCCCTATCT
ATTGAAATTGGGAATGTACCTTATCGGGGTAAAATTTCGttacctagagg
cattttcgtcgctttcccccaaccaaaatttcaaattcgtcacttttccc
cgacgaaatttacaatttgtgTCTTAAACTTTAAGAGCTCGTTTACGAAT
TTAATAATACTCTATGTACTTTAGGACACTTTTTCAGCTTCTAAACGTAC
TCAAATTTCCTCATGGGCCACCCGGtagacaaaaacaaaattttaaatga
acaCAATTTCACCATTATTTTAGAGATAACACCTGAGAATGGAAAATTGC
TTGGATCATtcccaaaacaaacaaaaagctgGAAAATAGAGATGGACATA
AAAGTGCTTTCAACTGGAACTTCAACGAGTACTAACATATTGCGTATGGT
TGAGAAAGAAAGTGGCTCACTATTGAATAATCCAGGTAAGACCACCCTGT
GTCCCCTGATGTCGCAGAGTTCGGTAGGACTTCAGCACCACTacacgttt
ttctataagaacatccaaaaatttttaaaacctttggatattcttaactt
ttggagtcttaaggctaaaaatgttcttaatatgttctaattttgacaaa
ttatgagcatttttggccattttcctaagaagtcgggtgttttggagtcc
ccaaagccttaaaatgttcttaactcgttcttaacatttcggtgaagcct
tatgttcttatatagtttgttcttataaaaaacgtgtagacagTTTAGCC
AAACCTTCGTCCCTGTTAGGAAATTAACTCTTATTTCATctcaatttgaa
attcaatagaaaaatatactcactgacctttatatatccctggaccaagt
tactcaatgccggccaagcaaaatattatgatcggagtttttttttaatt
ggtacccgcggagagagcgctagatctagtttcgcTAGTAAACTAATGAT
GTAGtgccgtttgtcgttaggcaaagtttcaaacactacaatgacttctt
tgtgggtaccaactttcaaaataaacttcgatcaaagatggcggatatag
cttggtccagggatatataaaggtcagtggttataCTATAAAACCATCCC
CAGTGAATCTTTTGAGCTTCTTGTTAGCTTGGGACAATATCATCCCTATT
TAGATTTCgataaatttttatccccactgtggaaaaaaaTGTTCCACCGG
TGCACAAAGAAAAGGGGCGCGTGTGACATGTAACCATTCTGTGTCTTAGC
AGTAAAATTCTTCCGTTGGGTAAGGAAAACgagagtttctaaacatcgac
cagaaatggcgaccacgaccatcGACCatgaccggcgaccagataaattt
ggattatcaagtttatctgctctctccaccgtagagaatgtttaaatcaa
gtcctcagaatacaaaaaagtgacctttgaattaagcagtcattttcttg
acaaagtgacactatttgacaaaaatattgacagggtatGCCGGCCATTC
TGTAGCAATATTCAATCTTTCGAATATTTAGTTCAATCCAATCCCCATAT
TTAGTTCAATCCCTATATTTCGTTCAATCCAATCCCAATATTTTATTCAA
CCCCTATATTTCGTTCAATCCAATCCCGATATTTTATTCAATCCAATCCC
Gatatttcattcaatcttttttttaattcaatcttttttttcattcaatc
tttttttttattcaatcttttttttattcaatctttttttttttattcaa
tctttttttcattcaatcttttttttttattcaatcttttttttattcaa
tctttttttttattcaaggcGTATTAACATCACTCCAGAATGTTCCTAAT
GATGAGGAGGAGCTGTTGTATCAATGCCATCGTGTTGACGAGCTTttaag
attattaagacatagtatatattaatattaatattagtaatagtattatt
tatCTGACTTAGAGAACGATGCGATCTCCTAACATCCCTAACATACTTGA
GTCAGATCCGACTAAACTTTTACGTCTTAAATCACTTCAAACCATGTGGA
AACTGCATTAGGGAGATAATAATTACGCTCGTACCCAGgaagattgaatg
aaaaataaagattgaaaaaaaaaaagattgaataaaaaaaaaagattgaa
taaaaaaaaagattgaataaaaaaaagattgaataaaaaaaagattgaat
gaaaaaagattgaattaaaaaaaatattgaaaaaaaagattgaatgaaat
atCGGGATTGGATTGAATGAAATATCGGGATTGGATTGAATAAAATATAG
GGATTGGATTGAATGAAATATTGGGATTGGATTGAACGAAATATAGGGAT
TGAACTAAATATGGGGATTGGATTGAACTAAATATCGGCATTAAGGATTG
GATTGAACTAAATATTCGAAAGATTGAATATTGCTACAGAATGGCCGGCA
TACagggtcattaagtatgatgtttgtaagctttgttactttgattatgc
tgaatgagatgcctttagtatgaatagatagaacttaTCAGGAGGAAAAC
ATTAtaaaggccagttttagagatatgaatctaatcaattattttattgt
cttaatgctgacaaaatgactaatttcgacagaaataacaatctgatgat
gaatACAAAGCTTCTctaaaccattttcaaaaaattatgtgccaccaatt
attttgatgctgataatacaaaaggatataAATGGAAaccataatcaagc
tccaagagcgtcgaaCTGGCTGTTTTACGTATTCGACACGTAGCTTTAaa
tagatgagacaggggtgagcttactcttcaatatgatatatattcaattg
atttataaaatgtatcaaaagaaattctaagctcgcccgatgaaagaaga
atttttagtagaactcaagtttgctctgaacattctaattatcagtattg
aagattctaaccttttaatatacgaaaatttagataaaacttcgtccacg
aaacaagtttatgttccatttcgttatccgttcaattttgttttgaaaag
atattttctcaagccagaaaatgaaaatttctttataagcacacacgatt
tcagactcaatttgtagacataaagtcgctggagaattttggaggaaagt
atcaaccaatagagttcaccttaaagaaaacattgatcgaaaaatcttat
catttgatgaaggattgtcaagtttacaggcctttttttagtccaaatat
tttcttacactgatgtcagaaacaatgaatctcgtctcatctaatttcta
aagcttaaatgagccaataaaatttcacctatagataaaagagctcatta
aaaatgcacgatatgtaagattatgagcatgcatacatcgtaactttttt
aatcgtagggcgagcttggttacaatagcattcTTCTTCTGtttttttAT
ACTTCTATGGAGAAacactctacgttggagaatggggaaaacttgacaac
ccaaatttatctggtcgccggacgtggtcgccggtcgtggtcgtcatttc
tggtcgacgtttagaaactcccaagGAAAACCTTTTAACAGAAAACCTTT
TTGGACAGATAATAAGTTGAGTTCTTTGGGAATGAACCTCCTGCAAccac
gaccctttgagagactaaatatttgcaaaatagtTACCTTTAGAGAGATA
GAATAGGCGAGAGGCGATCCTTAGAAAgacaaatttcgaaaatttttctt
gaTGGGACCCAAAGGGGGAAATCAAGACCCTCGGAGGGACTATTTTGACG
TTTTACTGTTTCTGCAACCCTTTAAATGTTTTAGATTAAGGTGAAAGAAC
GAGGTCCGCAAAACACTCCTACTTAAATCTTGTtgctttgattttctttt
tgtatttgaaaaacacgtgtatatttTTCACATCACTAGCACTTTTTTGT
TCTATTTCATCCTAGTTTAATATTCGAGGAGATCTTAGTCCAAATTAGAT
TTTAATGTGAACTGCTAAAGCCAGAATATACAActatttcaaactttgaa
tcTTCTATTCTTTAGGACTCATGTTGCATAAGAGTTCACCAGATGTCATG
CTCAAATTAGCAACTGATGGACAGCCGAATAAAAGCCTTGGTAAAGTTGC
GACCTTAAAACTAAATCAATTCGTTCACCTATCAATCAAGGTTGAAAGAg
atcttataaaaacaaaccatCATAAATTAACCGTGCATGTAGATTTTGTC
CAATCGTTTGAACGTATTCACAGTCATGCAGAAACATATGTCGATGTAGA
ATTATATTTCTCCTCTGGTTCTTCAAAGGCTGCTAATGTTGTTGTCAAAA
actttgtctttgaaaatttgggaGAATGAAATGATATGAAGCACCAAAAT
CAAGTGatac

Coding sequence (CDS) from alignment at sc0000081_pilon:389024..394883+

>MSTRG.11268.1.p1 ID=MSTRG.11268.1.p1|Name=MSTRG.11268.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3444bp|location=Sequence derived from alignment at sc0000081_pilon:389024..394883+ (Clytia hemisphaerica_ch_hm2_pilon)
atgatttttataatttttttgagttatTCGACATTTTATATGGTCTATTC
ACAAGATGGGCAATATTTTGGCGTCACAGACAACATGAAAATTCTTGTTG
ATCAAAATTCAGTATTGGATACTTTAACAGCAGattcaattttgatttgt
tcACATCGTTGTCAGTTACATAGTGAATGTAAGAACGCCAATTATATGGC
AGAAACTGGTGAATGTCAATTACTAGTGGAAATTGACGATCGTGATATCA
ATCAACAATCCGAAGACGCCGAAGGATTCATCAAGCTGACAAAGtttCAA
TGCAGTTCGGATTCTTCTGAAGATACCGAAAGTTCTTCTTCAAATGGAAT
CACCAAAACAGATGATAAAGTTTCTTTTACATCAGAGATAACACCTGAGA
ATGGAAAATTGCTTGGATCATtcccaaaacaaacaaaaagctgGAAAATA
GAGATGGACATAAAAGTGCTTTCAACTGGAACTTCAACGAGTACTAACAT
ATTGCGTATGGTTGAGAAAGAAAGTGGCTCACTATTGAATAATCCAGGAC
TCATGTTGCATAAGAGTTCACCAGATGTCATGCTCAAATTAGCAACTGAT
GGACAGCCGAATAAAAGCCTTGGTAAAGTTGCGACCTTAAAACTAAATCA
ATTCGTTCACCTATCAATCAAGGTTGAAAGAgatcttataaaaacaaacc
atCATAAATTAACCGTGCATGTAGATTTTGTCCAATCGTTTGAACGTATT
CACAGTCATGCAGAAACATATGTCGATGTAGAATTATATTTCTCCTCTGG
TTCTTCAAAGGCTGCTAATGTTGTTGTCAAAAactttgtctttgaaaatt
tgggaGAATGAatgatttttataatttttttgagttatTCGACATTTTAT
ATGGTCTATTCACAAGATGGGCAATATTTTGGCGTCACAGACAACATGAA
AATTCTTGTTGATCAAAATTCAGTATTGGATACTTTAACAGCAGattcaa
ttttgatttgttcACATCGTTGTCAGTTACATAGTGAATGTAAGAACGCC
AATTATATGGCAGAAACTGGTGAATGTCAATTACTAGTGGAAATTGACGA
TCGTGATATCAATCAACAATCCGAAGACGCCGAAGGATTCATCAAGCTGA
CAAAGtttCAATGCAGTTCGGATTCTTCTGAAGATACCGAAAGTTCTTCT
TCAAATGGAATCACCAAAACAGATGATAAAGTTTCTTTTACATCAGAGAT
AACACCTGAGAATGGAAAATTGCTTGGATCATtcccaaaacaaacaaaaa
gctgGAAAATAGAGATGGACATAAAAGTGCTTTCAACTGGAACTTCAACG
AGTACTAACATATTGCGTATGGTTGAGAAAGAAAGTGGCTCACTATTGAA
TAATCCAGGACTCATGTTGCATAAGAGTTCACCAGATGTCATGCTCAAAT
TAGCAACTGATGGACAGCCGAATAAAAGCCTTGGTAAAGTTGCGACCTTA
AAACTAAATCAATTCGTTCACCTATCAATCAAGGTTGAAAGAgatcttat
aaaaacaaaccatCATAAATTAACCGTGCATGTAGATTTTGTCCAATCGT
TTGAACGTATTCACAGTCATGCAGAAACATATGTCGATGTAGAATTATAT
TTCTCCTCTGGTTCTTCAAAGGCTGCTAATGTTGTTGTCAAAAactttgt
ctttgaaaatttgggaGAATGAatgatttttataatttttttgagttatT
CGACATTTTATATGGTCTATTCACAAGATGGGCAATATTTTGGCGTCACA
GACAACATGAAAATTCTTGTTGATCAAAATTCAGTATTGGATACTTTAAC
AGCAGattcaattttgatttgttcACATCGTTGTCAGTTACATAGTGAAT
GTAAGAACGCCAATTATATGGCAGAAACTGGTGAATGTCAATTACTAGTG
GAAATTGACGATCGTGATATCAATCAACAATCCGAAGACGCCGAAGGATT
CATCAAGCTGACAAAGtttCAATGCAGTTCGGATTCTTCTGAAGATACCG
AAAGTTCTTCTTCAAATGGAATCACCAAAACAGATGATAAAGTTTCTTTT
ACATCAGAGATAACACCTGAGAATGGAAAATTGCTTGGATCATtcccaaa
acaaacaaaaagctgGAAAATAGAGATGGACATAAAAGTGCTTTCAACTG
GAACTTCAACGAGTACTAACATATTGCGTATGGTTGAGAAAGAAAGTGGC
TCACTATTGAATAATCCAGGACTCATGTTGCATAAGAGTTCACCAGATGT
CATGCTCAAATTAGCAACTGATGGACAGCCGAATAAAAGCCTTGGTAAAG
TTGCGACCTTAAAACTAAATCAATTCGTTCACCTATCAATCAAGGTTGAA
AGAgatcttataaaaacaaaccatCATAAATTAACCGTGCATGTAGATTT
TGTCCAATCGTTTGAACGTATTCACAGTCATGCAGAAACATATGTCGATG
TAGAATTATATTTCTCCTCTGGTTCTTCAAAGGCTGCTAATGTTGTTGTC
AAAAactttgtctttgaaaatttgggaGAATGAatgatttttataatttt
tttgagttatTCGACATTTTATATGGTCTATTCACAAGATGGGCAATATT
TTGGCGTCACAGACAACATGAAAATTCTTGTTGATCAAAATTCAGTATTG
GATACTTTAACAGCAGattcaattttgatttgttcACATCGTTGTCAGTT
ACATAGTGAATGTAAGAACGCCAATTATATGGCAGAAACTGGTGAATGTC
AATTACTAGTGGAAATTGACGATCGTGATATCAATCAACAATCCGAAGAC
GCCGAAGGATTCATCAAGCTGACAAAGtttCAATGCAGTTCGGATTCTTC
TGAAGATACCGAAAGTTCTTCTTCAAATGGAATCACCAAAACAGATGATA
AAGTTTCTTTTACATCAGAGATAACACCTGAGAATGGAAAATTGCTTGGA
TCATtcccaaaacaaacaaaaagctgGAAAATAGAGATGGACATAAAAGT
GCTTTCAACTGGAACTTCAACGAGTACTAACATATTGCGTATGGTTGAGA
AAGAAAGTGGCTCACTATTGAATAATCCAGGACTCATGTTGCATAAGAGT
TCACCAGATGTCATGCTCAAATTAGCAACTGATGGACAGCCGAATAAAAG
CCTTGGTAAAGTTGCGACCTTAAAACTAAATCAATTCGTTCACCTATCAA
TCAAGGTTGAAAGAgatcttataaaaacaaaccatCATAAATTAACCGTG
CATGTAGATTTTGTCCAATCGTTTGAACGTATTCACAGTCATGCAGAAAC
ATATGTCGATGTAGAATTATATTTCTCCTCTGGTTCTTCAAAGGCTGCTA
ATGTTGTTGTCAAAAactttgtctttgaaaatttgggaGAATGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.11268	MSTRG.11268	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11268.1.p1	MSTRG.11268.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11268.1.p1.exon1	MSTRG.11268.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11268.1.p1.exon2	MSTRG.11268.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11268.1.p1.exon3	MSTRG.11268.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11268.1.p1.exon4	MSTRG.11268.1.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000081_pilon	genome	sc0000081_pilon:389024..394883 +

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MSTRG.11268.1.p1 (mRNA) -