|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000080_pilon:972766..978172+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11204.1.p1 ID=MSTRG.11204.1.p1|Name=MSTRG.11204.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5407bp|location=Sequence derived from alignment at sc0000080_pilon:972766..978172+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttagaaACATCAATCACAATTGCAAGGAGATCACTTGAAGATGTCATT
TCACAGTTATCTTTAAATCCATCATTGACTCACACCAATGTCAATTCAAA
GATAGTTTTAAAGGAAGACTCAGATGAACGGGAATTGAAAATTCCTAGAC
AAGAACGCTCTTGTTCTGAGCACGTCCAAAACAGCTCATCTACGGGTGAG
AATTCGATTAATCACAACAACCTCAGCACCACTATAAAACAAGAGTTTGC
AGATGATATTGATATCTCAACCACTAGTGATCACATTCCTTTTAGTCAAC
AACAATAAATCAATTTGTACTCGATTACTCGATTACGGTCCAAGCTTGTC
TGTGATTGCTGATCTCTAGGTTCCACTGAAGGAGTTAGTAGTTCATTTGC
TGGACAGTGTTGACTAAGGGGCGAGTTTTCTTCACTGTATAATGGCATTG
AAATGTCTGCCAAATCTTGTTTTTGGGATGTCTCATCATTACGTGGGGTA
TACTTAACATTCTCAGCAGGTCGGCGTGCACTCTGTCACCAAATAATATC
GGTTTAGAATTCCGTCATAAAATGGTGCATCGCTTGAAAGATTTACGGGA
AGCTTACACAGTTGAAGAACTTCAAGCTAATGGCTCAGAAAAGGTattgt
ttaatttttagttagggaattacatgtttttctttcataagCAAAACGTT
TATGAGAATATaaaggctcagtttttggtaccttaacaatggctctattg
tttgagaacaatagaatgctaagcataatgcgagcctgatatagggacag
acacttgcttataaaaaaaatgtaagtgTTTATTCCTGAGAAAATGTTAT
TCTGTTTACAGCTAAGGGTAACATTTTATAAGCAGTTCACTATAATATTT
GTAAACACGGCCAGTCttacattttcatcttaaaacaACTTTTCTGAAGT
GATTACTTACGGATTTGAGGCCAACAAATTGCTTGCACTTGCCGAATTGG
ACTGGCAGAGTTGTGAAGTCTTTCAGGTTTCTCAGAGGATACTCACTGTA
TAACAAAGAAGGAAAATTGTCTTTATGGAAGAATACAATCGATTTTGAAA
AGGTGGCTCTTTATCCAAACCGAAtgatttttattagtttttttttcata
aagggCGGGTGAATGTGACTAAGCCAAACCTGAAAGACTTCCAGTAGCTT
AGACAAGAGGAGCCACagtacattttatttttattttacgaatgGATAAA
AACAGTGTCATGAAAATCTgcacacaaattttgcgccccacTTGTCTTCG
CTTctgaatttttatccccagaACAAGTCAATTTTCTTTCCATTTCAGTT
TAATTCAACCAGATTGGAAAGTATTCTATTTTTCAATGGATTGGTTGAAC
ATTTCTGCTAAGAAAATAAAATCGAGATGAAACTACATATTCCAAACAAA
TACAAGTCATTGTATGAATGGATGTGTTTTACTTCGCCTTCCTTTGAAAA
TGAACTATTAGATGAAGTTGATTCAAAGATCTTCCCAAGGAGTTCACTTC
CCTTAGAGAAGATGAAGAAATACCATGGTCTTGAGATGAAAGGTACCATT
CCATTGAAATATATTGCATTGGTGAAGTGCAATTAGAAGAGCATAAATCG
TTGGATAGACATTTATCACAGTTACCGAAAACGTTTGGTCGCACTGCCAT
GAGAGTAAGAATACTTTACCAACTTCAAATATATCTTATACGATTTCATT
GTTGTGAGGTGATTTTCTCATTAGAGATGCTTCAGACCCGGTGGAAGCAG
TGAGACTGGGGAGACTCCCCATTGTTGCGTAAATGAGATTTTTCCcctca
aattcctagcgaattttatctcattttgagccttcagcctgcTCTCTCTT
ACAGGAGAGGAAGATTGTGATCTTTTAACAATATAGTGAACGCAGGTTCT
TTTCCCTCCCTTAGATAGTCTTAGTATACGAGTATTTCCATCAATGGTTT
TTACCATACCATTGATTTTGTGGTTTTTGGGATTGTTTTCTCTAGTTTTT
AggttcaaaactttcttttggaAAGGTGGATTTTGGTCTTCAACAACAAA
ACTGCAATGCTTTTTTCATGTCTCTCTTAACCCTTTCAGATGGCCCAAAA
GAAGACTTTTAAGGTCTTTAACAATCAAATTGAAAGTTATTGTAATAAAC
GGGTTCTGAATATCCAAGAATTTGTTAAAAATATgagaaagaataaagaa
atcGAAATGGAAGATGCACTGTCTAATCAAGATACAGGACATATTATGGA
ATATAAAAATGGTGTCTTCACTGGTGATGTGCCAAAAGCAAAAGATAGCA
TTGAGCTGATCAATCACTGTAGCCCATGGTATCTGACCTGGTGATTTAGC
CTTCAATTTGTATAATCAGAATGTTTGTACAGCTTTCAGATTTGTATGTC
TGTGGCTGAAATCGTACTTTGTGTTATACAGGGAAACAAAAATGGTGTCT
TCACAATCAAGTCTTCCAAAGGAGAATGGATCCTATATTTAGCAAACTAA
TTGAACTTATTTAATCATGAAACAGAAATTTAATTTAGTGGATGGTTAGG
AAAAATGGGTTTAGCGCGAGTTTAATTCACGAGATCGAGTTTTCTTCTCT
TTCCAGCAAAATTAGAGGGAAAATCGCTCTTGATTTTAAAGATGCtctta
aaaataaagatgtCCTTTTAAATAGGGTACCGTGTCGTGTAGGGATTCTC
ATGCTTGGTTGAGTTACGTAATTTCGGTCATTATGGGAGCAAACATTCGa
ataggctcttccagaaaatggaAAGATATATTGGATATATGGTCcggaaa
atagtcaaaaaattcaaaatttgccttgattGGGGGCAAAActgctctgt
ttaggggtaTTTATGAATGTCCGGTGGTCAAAAGTCTCAATGTCCAATCC
GTAGATGCATTCCTTACGCAATTCGTATGTTGGCTAcaataatggtggaa
attacgtaactttaTCAAGCATGAAAATCTCTCTACGCAACGGTACTCTA
TTTAAATGGACGTCCTTCTTTTCAAGATGCATCCTTAAGATTAAGGACGA
TTTTCCCACTGATTATTACCAATCTCTTTTCCGTAAACGTTGATTTACTT
TAATGGGAGAAATTTCTACTGGGAATAAATTTCGCGGACTTCGCAAAAAG
GCCTTTccaaggaaatatttttgaagaaaacttaaaaattcaaGTAACTA
CTTTACATATTGTTTACTGGTATCAAAGGAGTGCTAATAGTCCTTTTTTC
GATAACCAACATGCATAATTTGGCAGTTAAAAGggaaaaaaccttgaaaa
tattATCCCTCAATAGTGTCATCCAtgaaattaagtccccgtgaaatgat
aaaatttcgcggataagtTTAACCACGAagtttaatccccgcgaaaattt
atcctttTGAAGTAACAGTCTTTCAACCTTTTCAAGTCCTAGCATCAGAA
TTCTCGGGATATTCTTTGGATCTTAAACATTCTAAACCTTACTCTCTTTT
CTTAACTAgataaacaacaacaaaaaaaaaacacgtaaaCAAAAGACCAA
TTGTGTTCAAAGAATCAAGCTCAAATGGATATCAATTTATTACCAGATGA
GATACTAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAGCTT
TATCACGAACATCAAAAAGAATGTATAATCTTACTATTGAACGAATTTGG
TCAAAACCAAGATTTTATGGGAGACGAGATCATTCCTTCTTGACAAAAAT
AACGAAATTTCCGATTAAAGAATTGCATACAAATGAGTTTAATTGTCTTT
GGTCTAATATTTGCGATATCGTTTCTGGGCTTGAGTTAATACATATTGat
aataacaacaataatgCAACCTTTGAAGACGGATTTGACGATATTTGTGA
AATCGCAAAACCACCAATTGTTCTGCACACAAATGCTCTTAATATGAAAT
ACAGAGACgactttgatttgtttttgaacGAAATTCTCGGCGGTGTTTGT
TCGATACGAAAAGTGATAATCAATCACAAGTTTAGTAGCGATGAAAGAAG
AAACTGTGCTTGGTCACCTAAACAACTTGAAATGGTCAGTGAAAAAGTTT
ACATTGAGGAAATTTTGTTGAGTTCTTTATCGATCACTGATTTTGATGAG
CTTGTTAAAGTTTTGTGTAAACTTAAAGGAACACGTGTTAACATTTCCAA
AACAAGGTTCAATAACCAATATCTTTTAACTGTTGAAGATTTGGATAAAC
TTGCAACGAATAacataaaagttttcaaaattgattgTGTTGCCCTTGAA
TATGGTTTGTCGAGTGATGGCCTTACAAAGTTTGCTCCtgtactttcaaa
atttcaatctttGGAAGATTTTAACATTCGTCATGCTTACTGCAAAGATC
CAATACCTATTCAGTTATTTACCGATTTACCGATAATTACGCTTTCTACA
GCACAGATTCGTTGGGAAGCTGGTAAGATTGCAGAGATTGTTAAAATATT
ATCTGAAATCAAAACCCTGACCAATTTAGGCTTGGAGGTAAATAATCATT
CAGATTATAAGCTTTCCCTTGCGGATTTTGAACGTTTTAAAATTTTACCA
GTAGTAATGTTTTTAGACTTGGAAGCTTTAGATTTGACAAAGGAAAACGT
TCCAGAATTTCGTAAAATCATGCTTGagatgaaaattgaagataTTTACT
GGTCTTCTACGGGTGAATATTcgaattttgatatttctctAAAATCACAT
GGACCAGATGATTACAAAACCATTTAAATCATTTAAAGATCAGGATACAG
TATGCCATGCTGATAAGGACGGTATGCATAAACCTGCCACCCAAATCTTc
cgagtgaatatagttggacagaagtttttatttctttaatttttatttta
tttTACTGATGATTGTTGTCTGAGCACCATGTAACTCTGAGTTTGAAACA
TAGATATTGTGTCAACTCTTTATTAAATTTCTTTAAATATAGATAGCATG
GACGAAAGCAGCCGGTGAGGCGACTTATTTCTCTCGATGTGTTCTTAGAG
TATGTTTCAGTCAGATATTTTGATCTGTTCTGATTAAAGATTTGTAAATT
ATTCAGAAATGATTATGTTTTCTAACGCGAGACACGGGTATAATCAAGGT
TATTGAGCGCGATCTTGTTGCCTAGCAACCCAACTAAGTTTCAAAACACA
TCTTTTGTGGAAAATAACGAATGTCTTGCAAGTACTCTCTGGTACCTAAT
AGCTGGGGGGTTTGAAATAAGCGAAGGGTTTGGAAAATATCTCAACACTT
GATAAGCGGGGAGGAGGGGGTGGCAATAAGAATGTCGTAGGTGGAAAATT
TTCAAAA Coding sequence (CDS) from alignment at sc0000080_pilon:972766..978172+ >MSTRG.11204.1.p1 ID=MSTRG.11204.1.p1|Name=MSTRG.11204.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1203bp|location=Sequence derived from alignment at sc0000080_pilon:972766..978172+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATATCAATTTATTACCAGATGAGATACTAGAAATAATCATTGCGTT
CTCGGAAAAGGAAGATGCAAAAGCTTTATCACGAACATCAAAAAGAATGT
ATAATCTTACTATTGAACGAATTTGGTCAAAACCAAGATTTTATGGGAGA
CGAGATCATTCCTTCTTGACAAAAATAACGAAATTTCCGATTAAAGAATT
GCATACAAATGAGTTTAATTGTCTTTGGTCTAATATTTGCGATATCGTTT
CTGGGCTTGAGTTAATACATATTGataataacaacaataatgCAACCTTT
GAAGACGGATTTGACGATATTTGTGAAATCGCAAAACCACCAATTGTTCT
GCACACAAATGCTCTTAATATGAAATACAGAGACgactttgatttgtttt
tgaacGAAATTCTCGGCGGTGTTTGTTCGATACGAAAAGTGATAATCAAT
CACAAGTTTAGTAGCGATGAAAGAAGAAACTGTGCTTGGTCACCTAAACA
ACTTGAAATGGTCAGTGAAAAAGTTTACATTGAGGAAATTTTGTTGAGTT
CTTTATCGATCACTGATTTTGATGAGCTTGTTAAAGTTTTGTGTAAACTT
AAAGGAACACGTGTTAACATTTCCAAAACAAGGTTCAATAACCAATATCT
TTTAACTGTTGAAGATTTGGATAAACTTGCAACGAATAacataaaagttt
tcaaaattgattgTGTTGCCCTTGAATATGGTTTGTCGAGTGATGGCCTT
ACAAAGTTTGCTCCtgtactttcaaaatttcaatctttGGAAGATTTTAA
CATTCGTCATGCTTACTGCAAAGATCCAATACCTATTCAGTTATTTACCG
ATTTACCGATAATTACGCTTTCTACAGCACAGATTCGTTGGGAAGCTGGT
AAGATTGCAGAGATTGTTAAAATATTATCTGAAATCAAAACCCTGACCAA
TTTAGGCTTGGAGGTAAATAATCATTCAGATTATAAGCTTTCCCTTGCGG
ATTTTGAACGTTTTAAAATTTTACCAGTAGTAATGTTTTTAGACTTGGAA
GCTTTAGATTTGACAAAGGAAAACGTTCCAGAATTTCGTAAAATCATGCT
TGagatgaaaattgaagataTTTACTGGTCTTCTACGGGTGAATATTcga
attttgatatttctctAAAATCACATGGACCAGATGATTACAAAACCATT
TAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080_pilon | genome | sc0000080_pilon:972766..978172 + |
|
