MSTRG.1120.1.p1 (mRNA) -

Overview
NameMSTRG.1120.1.p1
Unique NameMSTRG.1120.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:2586397..2591924+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1120.1.p1 ID=MSTRG.1120.1.p1|Name=MSTRG.1120.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5528bp|location=Sequence derived from alignment at sc0000005_pilon:2586397..2591924+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTTCATTGTTGAGaaaatgtctgaaaaaaaaaaaaaaattataaaaaaa
caccagAACAACTTGAGATTTTACAATCATATTATGATCAAGGAATGACG
AATTACCGAACGGACAACTTGGAGGCGAGAAGTCTGTTATCAGAGGCAGT
CATCAAGACTTCGTTATCTGAAAGTCAAGTGAAGGTATGTAGGAAGCTTG
AttctatcaaaacaaaattctttcatcATGTCAAGTTTAAGTTCATTAGA
CTTTTAATTATCTTGATGCAGAATTGATTGACCGTACAGAAAATATAACA
TGATATGCTTTCAAAATATAACGCACAAATTAGCATTTGGGgataccaaa
ttttgaaaattcatcaCAGTCAGAGTCCTTTAATCTGTCTCTACACATTT
CATTTACACATGAGAAAGATGACCTTCCTATGTCTTTGCCTGATTTGTAA
AGGTTCTTACTGATTATCTGTTAATTAAATTTTGTATTACTGTTTTCTAG
CATTGGATCGACAGCAAAAAGAAGAAACCAACTGAGAAAGTTAAGATCAG
GACGAGGAAGGCTAGAGGTGTTGATATATTCAAATCAGAATACATGCAGG
ATGCCAAAAGTATAACATTactaaattgtcttttttatgtatttgcaaAT
CGTACACGAGCTGCACGAGCTTTGGTTTTATTTAACATtaactttatatt
tattttagtAACTGAATCCCAGACTAAGAAGCTGGATTAATTAGAGCTTA
TTCATATGATAAAATCTTTCGATGAGGGACAccctccctctctctcactc
cccctctctctcactctccctctttccctccctctatctatccctccctc
tatctctccctccAATTGACATTTAATAGTTAATACAATGAGAACTTTTG
GTAATAATACTCTTTTCTCCtctattttagaaaatgaagaaatgtaTAAC
CCTAACGAAGCTCTCACTAGAGCTACCATCGAGTGGAATCTACTGTCGAG
CgatgaaaaggaaaattataaTTCCCGTGCAGTTGATATCATACCTCCTA
AGTTTGATGAACTTTCAGCCGAGGCTCAAAAGGTTAAAATTTCAATGACG
AGGAGGAAGATTATCGCGTTGGTATGTAACTGACCTAAATAATTGTTTGT
ATGATTTTAGATCAATCTTATCACAATAAGACTTCAAAGTCAAATGACAA
ACTGTACATAGTCTGATGAAATGTAACAAATGTCATCCAATAATACTCAA
TTCTATGGAAAGCAATGATAAAATTGACTTGATTGCTTCATTTTAGCCTT
AATAAAAAGCGTTAGAATTTCGTAAAACTTTGGAAGCTGTCTTTAAAAtt
gctttaattttgatttcataaaGGAGGAGTAAATTTTAAAAGGGAGGGGT
ACAGACACCGTTGCACACTATAGGGATTgataatttcaaattcaatgaaC
GGGGAGTAATTGCCGGGGGAATGGATCGAAGCCCTTCAATCTAGTAAATT
TAGGCTGAAATATGGCTAGTTAGAGCCAAGCAAGGACTTTCCCTAAAGTc
tagacttttttcaaaaataattaaccGGGAGTCCTAAATCAGCTCTACTC
AAATCCAAGTCTGGATCGATCTATAATTCTACATACAGGCTAGTGGAAAA
CACTGCCAATATAAACCGGGTCTTAATGGTGCCAATTGTGCCAACACGTA
TATATGTGCATTGACCTCAGTTTAATAGCAAACTACTAAACTGAGGACTG
AAGTGAGATTCGAATCGTGCCACCCATCAAGTCATACCAAAGTCCATGGC
ACACAGTTTCTGCCCCTTAGAATTAGGGAAGGCAAAAATgcctttaaatt
ttaaaagaatttaaaataagGGGTTAGTTTTCATGAGCCCTTTGATACTT
CAAAACCTTGAAGGGAGAATTCAGCTGATAGTTTTCAATTGTTAACTGGT
TGATCTATTTCCAATAGTTTCAAAACTCACTAATAGCAAGTTAGGAGTGA
AAAAGCTGCAGAGGGGTGAACAAGATGTAGAGTATTCTGTGGAAATTTTG
TTCAAGGGGGCATCAATCTAAACCTACAGTTGGAGAAAGGAGAAGTTGCT
AAGGAAATAGGTAGAAACCATACTAGTGTCCCGTAGTGTACCCGTTTCCC
TGCTGAAATTCTTTGTTTcatttcagtgcaaagaaatggaaTCGTACGGA
GTTGATCTCCTTGTGCTTGAGGCAGATAAAGAGCGCAGAGAGGCAAAATC
CATCACCATGGCAGTGAAAAGGCATACGATTTTTGGGACAATCATGACGA
TTTGGAATGGgaattttcttgttttatgaATGGTTAGTGCCTTTTATTCC
GGTCTTCGTGTATAGACAAAAAATTCCTTGTTTAACTGATACCTTTCTTT
TCTTCACGGGAAAGTTCTTGCGTTTTGACGTTTCTAATGGATCGCTAGGT
TTATTTACtcttattgaaaaatataacagtCAATCCAGGTTTATTATCAA
ACTCTTGTATTTTCAGGAgtatcaacaaaagaaaatcgaCCTCTTCTAAG
TAGCGAAAGGAAGTTGCAAACCTTCTTAACAATAGATTCCGTAAGTCAAT
ACATATTTAAAGCATCTAGTACTATACTTGGAATAAGCAGTATGGAAAAA
TTAACTTATAGCGTTTAAATTTGCATTTCGCAAAATAATTAGCTATTATA
ATAATGTATGCATTTGAAATTGTTTATATAGATGGCATTGATTGTACATT
TTCCGTTAGGCCAATCAATTCTGCAtctcaaaaatttgaatattgcaACC
TAAATTTCATTGAAGAAGAAATAAATTTAAcgaaaaagaatatttcaatt
ttcaagactTCTATTGTTTTACACCTTTATCGAAAAATGGACTTTGGAAT
CTAAAACAGATTTTCTGGAAATTTCACAATCTAAGTAAAACTTTTCGTCG
GTTTTGACTCTTAATTTCACACACTTAACCAGTTGAATCCTTTTCAGGTT
GCATGAAAATTGCCACAAGATCCACCGTACCGTATAAGCAGATTTCGGAG
GGGCTGTTCGAGGTGCGTGGTCTTCCCAATGGATTTTACTTCAAAAAACC
CTCTGCCTGTGCCATCTGGGAACTGGTTTATTGAAGCAGCACATGGATGA
CATAACTTTCATGAAATGTAAGTGTATTCTGTGTGGTTGTTTTCAAGTTG
CATATCTTCAGTTATTAAACAACATGCATAAAAATTATCAGGGAAGTTAT
AACATTTACTGCTGGTAggttatgaaaataaatttaagtttttgtatgct
tttcttttcataaacccgttttcattttatataaatttattttcaagttC
TATTATTGAAGGTTACTGAAGGCATATAAATAGCAAATTGAACCTCAATT
CGATTTTACCGCATACTTAAAAACTGAGATAAATGCATGCCCATAGTAAT
GGTATGACTAAAGAACTTAGAAAGCTCATTTTGAATTGCAAAGCACAGAA
TAATATTACTCATAAAGAATTCCAGCATTACCAATGCATCTGCTactagt
ttctttttaaataaataaagtcCTTGAATTCATTAGAAAAAACTATCGAA
TTAGCCTTACCCAatgtatatttttatttgttttctagGCCGACCTGCTA
ATGTATCATCAAACGTACCATCAAGTGATGCTACAGAAAATGTATCGTCA
ATTGTGTCGTCAAATGCTTCGTCAAATGAAAGAACATCAAACAACCACCA
AGTACAGACCTCGGAATTAACATCGATAACATTCGAGGTGTTGGATGAGA
CCTCGGAATCTAACTTTAACTTAGCTCCTGACTcaaacttgaacaaaaga
caaagaaaatacaaaacccggaataaaaccgaggcaaagaaaaataaaga
aaatgagcaTCAGCAACAAGAACCCTTCGATGACTACTTTTTGAACTTGC
TACCAGATGAACAAGTTCCGAACAATGGAGGGTGGAAAGTGACAAAGAAA
GAACTTTTGGAAAAAGCCTCCAATGGAGATTATATGGTGGAGACAATCAA
TAAACATCGGGAAACCTCTGCTGGGATGGAGTATTTGGTCAGATGGGTCG
GCTATAAGAATGAAACTtgggaaaaagctgaaaatattccaGTTGATGAC
ATTGAGTACTATGGCAAGAGAACTAATTTCAATGGGAGCTAATTTTGCGT
atttttctgtcttttttttctcaaacaattTTTAACATACCACGAACGAT
AaaagaattttgacaaaaaaggaGTTGTCAAGCGCAAAAATTAGGTCTTA
CTAGTAGATCTCTGCGAAATTGGTTCTCTTAGAAAAGTACCATTATAAGT
TGGTTCACGATAAGTACGCACTCTTTTTCTTgtgcttataacttttgaag
cgATTTTTCAATCGTAagaaatttggtatcgttgggaAGATATTAGTGAT
TGCGAAGATTTCTTTTTACTTGGACCGTATCTTTTAGAAAATTATAGGGG
ATATCTTGGTAGGGAGGGTCTTTGCTGAGCAATCAAACTACCTTGGGGAA
AAGTTGATCGGTTAAATCATGTCAAATATCTATGAATGCTGTTTGGAGGG
TCTTTATATCTTATCGTGAACAGGCTTTTTTCGCGCCTTTACATTGTCTA
TTTCCAGATCTTTTGTCATAGACGATAACCAAAATGATAATTGACACGCT
ATAGTTATATGAGCAAAGGCATGtgttttcaaccttttttttttccTGCG
AGTACTTTAATGCAATCTTCTGGAATATTGTCATTCTCCTAAGTTTAATT
TTCTCTACAAATATATCCTGTCAAGATAAAAACAGCGAGAGGGTTGGATG
CGAATTTAGCCTAGATAATTGTAACAATAACTTTCAGCCTGTAGTAGATT
CATGCGCAATTTAGTCTGtaactttttagatttttttctcacagaCCCTC
CAGTGGGAacattgacgtcacttttaattttGAGGCTGTTGCAGTATTGA
TGCGCAAGCAGACAAAATTGGTGTATGCAAGTCACCCTAAGTGATGAAAA
ATCGTGCGGTGGGCTAGTATAGGGTAAATGACTTCGGACTTGAGGTCAAT
TGTCAAGGCTAACGTCGTGTCCAACCCTCTCGTTGATTTTTTCTTGATCT
TTAATCACAACCCTGTAATACAATTGTCAATCACTTCACAGAAAATTGAT
TTGATGATTAATGCCACGTAGGTGgtcaatattttatcaaaaagaccgat
tatgaaattgacaatacAGTTTTTAACAATGTAAACAATAAGATATATTT
GTTAATTGCTTTTAATCATTTTATATTTACATGGCCGTACATGGATTATT
AACCTTCTAGACTGGTCTTCACCTGGTCTCCGGCACACGTGCCCTCGGTC
AATATTTTCCTAGATAGACTTCTTTCCTtgtgtttgttttcatttaacat
GTACACTTAATTAAGCACATTTTTATACATAacacttttttgttattttg
aaaatatacatTTACTACTGTAATTAAA

Coding sequence (CDS) from alignment at sc0000005_pilon:2586397..2591924+

>MSTRG.1120.1.p1 ID=MSTRG.1120.1.p1|Name=MSTRG.1120.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1158bp|location=Sequence derived from alignment at sc0000005_pilon:2586397..2591924+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGACATAACTTTCATGAAATGCCGACCTGCTAATGTATCATCAAA
CGTACCATCAAGTGATGCTACAGAAAATGTATCGTCAATTGTGTCGTCAA
ATGCTTCGTCAAATGAAAGAACATCAAACAACCACCAAGTACAGACCTCG
GAATTAACATCGATAACATTCGAGGTGTTGGATGAGACCTCGGAATCTAA
CTTTAACTTAGCTCCTGACTcaaacttgaacaaaagacaaagaaaataca
aaacccggaataaaaccgaggcaaagaaaaataaagaaaatgagcaTCAG
CAACAAGAACCCTTCGATGACTACTTTTTGAACTTGCTACCAGATGAACA
AGTTCCGAACAATGGAGGGTGGAAAGTGACAAAGAAAGAACTTTTGGAAA
AAGCCTCCAATGGAGATTATATGGTGGAGACAATCAATAAACATCGGGAA
ACCTCTGCTGGGATGGAGTATTTGGTCAGATGGGTCGGCTATAAGAATGA
AACTtgggaaaaagctgaaaatattccaGTTGATGACATTGAGTACTATG
GCAAGAGAACTAATTTCAATGGGAGCTAAATGGATGACATAACTTTCATG
AAATGCCGACCTGCTAATGTATCATCAAACGTACCATCAAGTGATGCTAC
AGAAAATGTATCGTCAATTGTGTCGTCAAATGCTTCGTCAAATGAAAGAA
CATCAAACAACCACCAAGTACAGACCTCGGAATTAACATCGATAACATTC
GAGGTGTTGGATGAGACCTCGGAATCTAACTTTAACTTAGCTCCTGACTc
aaacttgaacaaaagacaaagaaaatacaaaacccggaataaaaccgagg
caaagaaaaataaagaaaatgagcaTCAGCAACAAGAACCCTTCGATGAC
TACTTTTTGAACTTGCTACCAGATGAACAAGTTCCGAACAATGGAGGGTG
GAAAGTGACAAAGAAAGAACTTTTGGAAAAAGCCTCCAATGGAGATTATA
TGGTGGAGACAATCAATAAACATCGGGAAACCTCTGCTGGGATGGAGTAT
TTGGTCAGATGGGTCGGCTATAAGAATGAAACTtgggaaaaagctgaaaa
tattccaGTTGATGACATTGAGTACTATGGCAAGAGAACTAATTTCAATG
GGAGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1120MSTRG.1120Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1120.1.p1.exon1MSTRG.1120.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1120.1.p1.exon2MSTRG.1120.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1120.1.p1.exon3MSTRG.1120.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1120.1.p1.exon4MSTRG.1120.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1120.1.p1.exon5MSTRG.1120.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1120.1.p1.exon6MSTRG.1120.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1120.1.p1.exon7MSTRG.1120.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1120.1.p1MSTRG.1120.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:2586397..2591924 +