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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000080_pilon:640328..644275+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11175.4.p1 ID=MSTRG.11175.4.p1|Name=MSTRG.11175.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3948bp|location=Sequence derived from alignment at sc0000080_pilon:640328..644275+ (Clytia hemisphaerica_ch_hm2_pilon)
ATAAAACTCAAGATAAAACCGCAAATAGTTTTGAACGTGAGATCATATAT
GAACAcgtgggttaagcaaaatgttATGTAAAGGCGTGTTTGTTTGCACC
AATACAGCCATAGCCATAAAGGGATACTTTGGATAACTAGCTAGCACACT
GgaagtttcaagaaaattgtATATAACATTATGAAGATTAGTTTCTATCT
AATCCTCCTGGTTTTTGGAACCACGTCTTGTTTTGATTTATCAGCTGAAG
GTAAAGTAGCTTTTATTCAAAATCTCTCTGACGTTCAGAGTAAGTTTCtt
tcaggcccggcggaagcggagAGGCTgaggagacttcagcctccccactt
tttttgcaaatatataatttttttatttaaagttttttttatttagtaat
TAGCTAAGGCTAGGGTTTTATATGCAGTACTCCTATAAATTTGATTCAAT
TTTAGCCAATCTATCTAGGgcccatttttaaaaattctcttCCCCGTTGT
TGGTGCCAACCGGCAGCGCTCCCTAAAACACTAATTTTCagtctcttcac
tttcaaatTCGTTCGGCCGGGCCTGTCTTTATAAGTAAatccatttgaaa
aatttaagatAACTCATTTGTTACTTTTGCAACATTAAAATTCCCCTCGA
CCACTGAGGTTCCACCCCAGTAAATGAAAGCTCTAAATTATTTTTGGCAA
TTGAATAACAGCATCAAAATCGAGGACAATTTCCCCGAGAGCATTTCCTC
TTAGAAAATTCCTTTCTCAGTTAAGAAACTTACTTCCATTTAACTAATCT
ATTTTAGATGGAAGGCTGGTATGTGGCCCTAATATGATGAAGATAAGTCT
CAATGTCGACAAATTCAACCAACATAATCGACCATATAGAGCTTACTTCG
AAGGTTATGATAAACATCCAATCTGTTCTGTGAAACACGGAAACACTGGT
GATCCATTGGAGCTGAATTCTAAATTCAATGAATGTGGCGTTCAATTGAT
ACAACACCAAGGGCAGATTATCTATACTCAAATCGTTTTGGTGATTTATG
GTTATAACCCGAAATCGAGTTTGGTTTATCGTGAAGAAGCTATTCGGTTT
AAAGTGGAATGCGTTCTCCAAACGGATTTGTCAGTTGGATTAGCTGATCC
TGGATATCTTAATGTGTCGAAAGCAGAAGTAGATGGCCGTATGaataaat
tttatatgatttttttaatcccTTGATTATCTTGAGGCTTGAGAGCTTTA
AATGGGTTAACATAATTGTtcccaaaaagaaaaacaaccctgtgtcacag
actcgTTGAAAAATGTGCCCAAAATTCCCAGTGGAAAAAATATACTCTTC
GATTtaagccccactgggaaattgagaGAATCATCATTTGAGCTGAGAAA
CAATAAAATTgagattttaaaactttcaccGGGGCtgggagacaggggtg
tagaaaACTTTCGATTGAGTTACAGGGATCAAAATGTATTATTGGTcaat
ttcttatttaaaaagtcTATGACCAAGCAAAGGTGCCTGTCCCTTTCCAT
TTTAACAGTCTATTTGAGACATCATATGCCTGAGAGGGTGTGGTTTAGTT
TACACtacttttaaaaacatcatcaaatactctgaaaatatttacatcga
ttttcatttatagtcaAAGAAGAAATCAGAGCAGATGCAGAATTCGACAT
CAAATTGGTCAGAACCACCGACGGTTCTTTCAACTCTGAAGATTCATCCT
CACAAATGCGATTGGGAGATCAAATGTATTTCAAACTTGAATTGAACACC
ATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTATGCAAGCAGTAC
GAAAGATTCAAGCGAAAGATATTTGTTGATCGAGGATGGAGGGTAAGATA
CATACAAAACATTATTTCAATGCTTTCCTCTCTCTTGGACGAATACATAA
AGATTTTTATCCACGCTTcattagattttgagaaactgtttttacgatca
ataatcacttttaacaaaaggaATCTAAATAGACGATAGAGCAGCCAAAG
TACGATCTTATTTCATCTGATAGCAGTTCACTGAATAAAGCCTCTGTAGT
TTGTATCAATCTATAATTGACAAAATATGACCCGCAAAGTTTGCTTTGGT
GAAAGAAATGCGAAAGTTTCCGAAgggcaaatcactaaaataaatctcgt
acacaattttataaatcaaaaataaatcataaataaaaaataaaccaaaa
gtaaatcataaatcaaaaataaatcagaaataaatcaataaatcaaaatt
aatcaaaaataaatcatgaataaatgaaaaatcgttcgaaaaaaaattca
ttttttagttttttttaattttttgacaatGATTTTGATTATCAGTTCGT
TATactataatttgaaaaaaattttccataaaattactcctattcataaa
ttagagataaatcaaaaataattcaaaaataaatcataaataaaccataa
atcaaaaataaatcaaaaataaatcagaaataaaaaataaatcagaaata
aatcataacataattcaaaaataaatagaaaatcaaaaataaataaaaaa
taaatcacaaatcaaaaataaatcaaaaataaattataaataaaaaataa
atcataaatctcgccgtacaccatttttcgagtgatttgcgCCTCGAAAG
TTTCAACCACCTCTTTTTGTACGTACAATGTACTTAACGCTAAAAGAGTG
ATCGTGGGCGAAATATTGAAGGGGTTAATAGGGATAGAAAATCTCTTACT
TTTAACCTTTTCTAGtgataatttttgatattcatgacgtaatcttttat
acggaagcacacaaaaAACATCGGGCGTTCGCCACcagtttcattgttta
aattcaaaactggtgACAAACGCCATGTTGTTTTTCGGGtgttccgtata
aaagattacgtcatgaatatcaagaatagaaTTCAGTTTAGTTGTCCAAA
GAAGATGAAATTTCAGGTATTTTTTATGCAACATTTCGATCAACTATTAC
AGGATGTTAAATAggatttatttgatttttgacgCGAAAAAATTAGGCAA
AAAGCAACCTAAGTCCCTTCGTactatcagctttttgatgaattgggctt
ttccagaaaaaaaaattatccccactgttgaggatattgatttttcaaag
tatcgaatcctactttattagtaaataCCCCCtagatatccactcttaaa
aataagctcaaccccctggatatcctctcttagaagtatgcttacccctg
gatatcgtattttttacttgaaaagacactttacccttGGATATccactc
ccttgtagatatttaaccctcTGGGTATCCACTTTTGAATAAAACTGGCA
GGAGGgagcacggactatttctggaaaagccctttACCAATTGCGCTATA
TAATTCTCTAGCGTTCATAAGTAACGTCTGGAACACAGGAGTGCGGTTTT
TGAAGCATCTATCTTTATAAAAGCTGTTTTATATTTCAGGTGCCCAAACA
TGGCCGATGGAACGATCAGCATTCCCTATGAAAACGATCAAAAGCTATTC
AAATGGGAAAATGAAGCTTTCCGATTTTTCGGCGATTCTGACGCCGTTTA
CATAACGTGTAACGTGAATGTTTGTAACAGTAATGACTATGGAGATGATT
GCTTGAGATGTAACTCGATCAAAAGACGACGACGCCGACGTCGTGCCGTG
TTTCATTTCAACGAAGAGAAAATAAACACTAAACAGCAAAGAGTGATTGT
ATCAACTCAAGTTTACAAattaatttgatgaaaatttgtagttgatgatt
tttttttgatttttcaagtatAAAAGTTAATTGTGTGATTATCTAAAAGA
TTTCTTGGTGTTCTTATCTATATGATAATAGCCGTAAGGTAAGTGGCC Coding sequence (CDS) from alignment at sc0000080_pilon:640328..644275+ >MSTRG.11175.4.p1 ID=MSTRG.11175.4.p1|Name=MSTRG.11175.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3876bp|location=Sequence derived from alignment at sc0000080_pilon:640328..644275+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGATTAGTTTCTATCTAATCCTCCTGGTTTTTGGAACCACGTCTTG
TTTTGATTTATCAGCTGAAGATGGAAGGCTGGTATGTGGCCCTAATATGA
TGAAGATAAGTCTCAATGTCGACAAATTCAACCAACATAATCGACCATAT
AGAGCTTACTTCGAAGGTTATGATAAACATCCAATCTGTTCTGTGAAACA
CGGAAACACTGGTGATCCATTGGAGCTGAATTCTAAATTCAATGAATGTG
GCGTTCAATTGATACAACACCAAGGGCAGATTATCTATACTCAAATCGTT
TTGGTGATTTATGGTTATAACCCGAAATCGAGTTTGGTTTATCGTGAAGA
AGCTATTCGGTTTAAAGTGGAATGCGTTCTCCAAACGGATTTGTCAGTTG
GATTAGCTGATCCTGGATATCTTAATGTGTCGAAAGCAGAAGTAGATGGC
CtcaAAGAAGAAATCAGAGCAGATGCAGAATTCGACATCAAATTGGTCAG
AACCACCGACGGTTCTTTCAACTCTGAAGATTCATCCTCACAAATGCGAT
TGGGAGATCAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGAC
TTGAAAATCTCACCACAAACTTGTTATGCAAGCAGTACGAAAGATTCAAG
CGAAAGATATTTGTTGATCGAGGATGGAGGGTGCCCAAACATGGCCGATG
GAACGATCAGCATTCCCTATGAAAACGATCAAAAGCTATTCAAATGGGAA
AATGAAGCTTTCCGATTTTTCGGCGATTCTGACGCCGTTTACATAACGTG
TAACGTGAATGTTTGTAACAGTAATGACTATGGAGATGATTGCTTGAGAT
GTAACTCGATCAAAAGACGACGACGCCGACGTCGTGCCGTGTTTCATTTC
AACGAAGAGAAAATAAACACTAAACAGCAAAGAGTGATTGTATCAACTCA
AGTTTACAAattaatttgaATGAAGATTAGTTTCTATCTAATCCTCCTGG
TTTTTGGAACCACGTCTTGTTTTGATTTATCAGCTGAAGATGGAAGGCTG
GTATGTGGCCCTAATATGATGAAGATAAGTCTCAATGTCGACAAATTCAA
CCAACATAATCGACCATATAGAGCTTACTTCGAAGGTTATGATAAACATC
CAATCTGTTCTGTGAAACACGGAAACACTGGTGATCCATTGGAGCTGAAT
TCTAAATTCAATGAATGTGGCGTTCAATTGATACAACACCAAGGGCAGAT
TATCTATACTCAAATCGTTTTGGTGATTTATGGTTATAACCCGAAATCGA
GTTTGGTTTATCGTGAAGAAGCTATTCGGTTTAAAGTGGAATGCGTTCTC
CAAACGGATTTGTCAGTTGGATTAGCTGATCCTGGATATCTTAATGTGTC
GAAAGCAGAAGTAGATGGCCtcaAAGAAGAAATCAGAGCAGATGCAGAAT
TCGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAACTCTGAAGAT
TCATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACTTGAATT
GAACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTTATGCAA
GCAGTACGAAAGATTCAAGCGAAAGATATTTGTTGATCGAGGATGGAGGG
TGCCCAAACATGGCCGATGGAACGATCAGCATTCCCTATGAAAACGATCA
AAAGCTATTCAAATGGGAAAATGAAGCTTTCCGATTTTTCGGCGATTCTG
ACGCCGTTTACATAACGTGTAACGTGAATGTTTGTAACAGTAATGACTAT
GGAGATGATTGCTTGAGATGTAACTCGATCAAAAGACGACGACGCCGACG
TCGTGCCGTGTTTCATTTCAACGAAGAGAAAATAAACACTAAACAGCAAA
GAGTGATTGTATCAACTCAAGTTTACAAattaatttgaATGAAGATTAGT
TTCTATCTAATCCTCCTGGTTTTTGGAACCACGTCTTGTTTTGATTTATC
AGCTGAAGATGGAAGGCTGGTATGTGGCCCTAATATGATGAAGATAAGTC
TCAATGTCGACAAATTCAACCAACATAATCGACCATATAGAGCTTACTTC
GAAGGTTATGATAAACATCCAATCTGTTCTGTGAAACACGGAAACACTGG
TGATCCATTGGAGCTGAATTCTAAATTCAATGAATGTGGCGTTCAATTGA
TACAACACCAAGGGCAGATTATCTATACTCAAATCGTTTTGGTGATTTAT
GGTTATAACCCGAAATCGAGTTTGGTTTATCGTGAAGAAGCTATTCGGTT
TAAAGTGGAATGCGTTCTCCAAACGGATTTGTCAGTTGGATTAGCTGATC
CTGGATATCTTAATGTGTCGAAAGCAGAAGTAGATGGCCtcaAAGAAGAA
ATCAGAGCAGATGCAGAATTCGACATCAAATTGGTCAGAACCACCGACGG
TTCTTTCAACTCTGAAGATTCATCCTCACAAATGCGATTGGGAGATCAAA
TGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAATCTCA
CCACAAACTTGTTATGCAAGCAGTACGAAAGATTCAAGCGAAAGATATTT
GTTGATCGAGGATGGAGGGTGCCCAAACATGGCCGATGGAACGATCAGCA
TTCCCTATGAAAACGATCAAAAGCTATTCAAATGGGAAAATGAAGCTTTC
CGATTTTTCGGCGATTCTGACGCCGTTTACATAACGTGTAACGTGAATGT
TTGTAACAGTAATGACTATGGAGATGATTGCTTGAGATGTAACTCGATCA
AAAGACGACGACGCCGACGTCGTGCCGTGTTTCATTTCAACGAAGAGAAA
ATAAACACTAAACAGCAAAGAGTGATTGTATCAACTCAAGTTTACAAatt
aatttgaATGAAGATTAGTTTCTATCTAATCCTCCTGGTTTTTGGAACCA
CGTCTTGTTTTGATTTATCAGCTGAAGATGGAAGGCTGGTATGTGGCCCT
AATATGATGAAGATAAGTCTCAATGTCGACAAATTCAACCAACATAATCG
ACCATATAGAGCTTACTTCGAAGGTTATGATAAACATCCAATCTGTTCTG
TGAAACACGGAAACACTGGTGATCCATTGGAGCTGAATTCTAAATTCAAT
GAATGTGGCGTTCAATTGATACAACACCAAGGGCAGATTATCTATACTCA
AATCGTTTTGGTGATTTATGGTTATAACCCGAAATCGAGTTTGGTTTATC
GTGAAGAAGCTATTCGGTTTAAAGTGGAATGCGTTCTCCAAACGGATTTG
TCAGTTGGATTAGCTGATCCTGGATATCTTAATGTGTCGAAAGCAGAAGT
AGATGGCCtcaAAGAAGAAATCAGAGCAGATGCAGAATTCGACATCAAAT
TGGTCAGAACCACCGACGGTTCTTTCAACTCTGAAGATTCATCCTCACAA
ATGCGATTGGGAGATCAAATGTATTTCAAACTTGAATTGAACACCATCCG
TGATGACTTGAAAATCTCACCACAAACTTGTTATGCAAGCAGTACGAAAG
ATTCAAGCGAAAGATATTTGTTGATCGAGGATGGAGGGTGCCCAAACATG
GCCGATGGAACGATCAGCATTCCCTATGAAAACGATCAAAAGCTATTCAA
ATGGGAAAATGAAGCTTTCCGATTTTTCGGCGATTCTGACGCCGTTTACA
TAACGTGTAACGTGAATGTTTGTAACAGTAATGACTATGGAGATGATTGC
TTGAGATGTAACTCGATCAAAAGACGACGACGCCGACGTCGTGCCGTGTT
TCATTTCAACGAAGAGAAAATAAACACTAAACAGCAAAGAGTGATTGTAT
CAACTCAAGTTTACAAattaatttga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080_pilon | genome | sc0000080_pilon:640328..644275 + |
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