MSTRG.11164.1.p1 (mRNA) -

Overview
NameMSTRG.11164.1.p1
Unique NameMSTRG.11164.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:537007..542666-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11164.1.p1 ID=MSTRG.11164.1.p1|Name=MSTRG.11164.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5660bp|location=Sequence derived from alignment at sc0000080_pilon:537007..542666- (Clytia hemisphaerica_ch_hm2_pilon)
AAAATAATCAAAGAAAATAAAATTCATCGTCGATATTTTTTCGCGATATT
TAGATGCATTGAACAGGTTTTTCACATAGAACAAACATAATGGTCCATCA
AGGTTTTTACATAGAACAAACACAAAAATGATTGATTGTGGAGTAATGAA
TAACATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGAAA
CACAAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGGTGAA
ATACTTCGTTTATCTAACTCAAAATTTATAAGATTTATTTTTAATGACTT
ATACATTTACACCCCCTTCTCACAGACTCGTTAGTAATTTTTCAGCCAAC
AGGGATAAAAATAACGTACTGAAACTCAATGTGGATTGATATTCACATAG
TTTTTTGGCTGGGGATTTCAATTCTTTTGTTTTCAAGCCATAAAATGCCA
TAAAATTCAGAGGGGATGGGAAAAATGGTAAATATTTCACAGTGAGGATT
GATTTGTTTGATTATTTTCAGCGGGGACAAAAATTGGAGGATAATTTCTC
ACCGGGGACGATATTTTGGCCAATTTTTCCAGTGGGAAGGGGTCCCAGTG
GGTCGATGAAGAGGGGGTGTACATTTATGCTGTCTCCAGTTGCGTTAGTT
GACAAGTCTGAAAAACCATAGTCCTTATAAAAATCCACGGTTTGGGAATC
CTTTTCCAACCCCTTTTCACAGACCCGTCAGGATTTTTCAGCCAGTGTGG
GTGAAATTAACGGATTCAAACGCAATTGAGATTGATGTTCCTATGTTTTT
TTTTTATGGCTGGAGGTTTGAGTTCCATTTTCGTTGTCTTCAAGGCATAT
AATTCAGTGGAGATGGAATAAAGCACAATATTTTTTAGTGAGGGTTTGTT
TATTTGATAATTACTAGTGGCAACGAAAATTGGGGTATAATTTTCCACTG
GGAACGGTATTTTGGCTAATCTTTCCAGTCAGAGGGGGTCCCACCGGTTC
TGTGAGAAGTAGGTGTATCTTATCATTGGATTGCTTATAAAATGGTTTGT
TTTGATCACTTTCATCATGTGAACAATCCAAAGAAGAGTAGTTAGAGGGA
CATAAAAGTAGTGACGAAATTTGTAAACAAACTGTATGCAGCGGGAATAA
AATCAAAATAAATGTCAAAATTAAAAAAAAAAAATATGGCTGATTTTGAT
TGTTTCAATTGTTTTACAAGTTTGTTTTGGACACGCGATTTTAATTGTTC
TCTTTAATGACACGTGGTTCGCGCTATGTTTTTTACTACTTTTACGTCCC
TTTAACCATGGAGGTAAAGAAACAGGAGAAGTATGCTATTGTAACCAAGC
TCGCCCTACGATTAAAAAAATTACGATGTATGCATGCTCATAATCTCATA
TTACGTGCATTTTTAATGAGCTCTTTTATTCATAAGTGAAATCTTATTGG
CTCGTTTAAGCTTTAGAAATTAGATGAGACGAGATTCATTGTTTCTGACA
TTAGTGTAAGAAAATATTTGGACTAAAGGCCTGTAAACTTGGCAATCCTT
CATCAAATGATAAGATTTTTTAATCAATGTTTTCTTTAAGGTGAAATTTA
TTGCTTGATACTTTCCTCCAAAATTCTCCAGCGACTTTATGTCTACAAAT
TGAGTCTGAAATCGTGTGTGCTTATAAAGAAATTTTCATTTTCTGGCTTG
AGAAAATATCTTTTCAAAACAAAATTGAACGGATAACAAAATGGAACATA
AACTTGTTTCATGGACAAAGTTTTATCAAAATTTTCGTATATTAAAAGGC
TAGAATCTTCAATACTGATTATTAGAATGTTCAGAGCAAACTTGAGTTCT
ACTAAAAAGTCTTATTTCATCGGGCGAGCTTAGAATTTCTTTTGATACAT
TTTATAAAAGAAATCAAAAGACTTTAACGACCAATTACCGAGACATTCAA
CTCCTGTTTTTCTTTATACCTCCATGCTTTAACAAACTGTTCAAATCAAT
CTTTTAACTATTGTTTTACACAAAGAAAAAGTCAACAAAATATTATAAGA
ATCGGCTTCCAGACCAAGGTTCTTCATACAGACTATAGAAAAACTTACTT
ACAAAGACCTAAAAGGGCATTTTTAACTTTCTCGTGAAAAACTGAAAACT
GTGTTCTACAAAACATCAGTGCTAGGGAAGAAAACCATAGATAGCGTACT
TTCAACACAAAAAGTTTCAGCCTCAAATTCTTCCTAAATTTTTTTAAGAT
AGAGGGTATATTTTCTTGTAGGTTTAAAAGGGTATCCCTGGTAAAAGTGT
TATTCTTTTTCAGTTGAGTATGGCTATGTTAAAATGGTATCACACGACAA
TCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAAACTTCCC
AAGAATGCATTCGAGCTTGTCTCAACTTTACAGATTGTTGGAGCATCAAT
TTGAAGGAACAGCCAAATAATGAGATTTACGAATGTCATATTTTGGATAC
TGATCGATTTCGAAACGCGTCAAATTTTGTCTCTTCCTCTACAGGAAATT
CTCATTTTTCACTTGATGTGAGTAAATAATAAATTATCAAATTCGTCCCC
AGTTTCTTAAATTACTTATATAGTCTTTTTGATTGTCTTAACCTCCATCA
GTTCAGTAAAATAAAAAAGTAAAAGAATTTTATAATTTGTGACAGGGGAT
GACTCAAAGTAAATCACCTTTTATAGAAGAACCGAAATTCCACCGGGGTA
ATAACAAAGATTTTTATCGAATTTTTTTGGAAGTTTTGACTACTTTATGC
AAATATGTCGACATTTCCTAACTTGATGGGAACAGACAGTCAGTCATCTT
CTTCGTGAAAACTCTCTCCATGTCATTTTTTATAGCATGATTGTGAATGG
GAGGAGACATGCATCAACCCAAACAAAAAATGTATTCCAAACTACTCTGA
TGGTTCTTATGAATGTGTTTGCGAGCCTATTGGTAAATACGATATTCATT
GCACAAGTAAGTATTTTCAATAAGATAAAATGATTTAAGAGTATAAGACT
CCGAAACTCAAAATTGTTTTGACAATTCTAAGATGAACAGCAAGATTCAG
TAAAGAACAAATTCATTTCAATTTTTGAGAGAAGCACTCTCCCATTTTAC
TTTTACAGGATTAGTTTTGTGTGCTTTGACTCTAGATGATGTACCAGTTG
TCATGGATACATCGGAAACGGGGAGATTGGAAGACTTCAGCCTCCCCACT
TTTAAGCAAATGAGATTTTTTCCTCAAATTCCTAGCAAGTTTTATCTTAT
TTTGAGCCTCCAGCCTCCCCACTTTTACGGTTGTTCCGCCGGGCCTGTAT
AGGATAGGCTTTCCATAACAAATGGTATAAGATCTTACCAATACAAGGAA
ACCATAATTCTCTGAAATCAATCTGTGGAGACAAACTCTAAGAATTCTAT
CGCGAATGTCTCAATCACAATAATATCCAAAGAATCGAAGGTGAAGAGCA
CATTGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATT
GTCCAGGGGTAGTGAAAAAATACCAAACAATTGCAATGTCCAGGGGGTAA
ATTCCAATGTCCAGGGGTAATTTTTTGTGTCCACGGGGTTGATTTGATGT
TTGTCCAGGGGTATAAACCGTGTCCAGGGGGTTAAAAATCAAAATGTCCA
GGGGTAATTCATGAAAAAAATAATATATCCTCCACCCCCCATGAACGAAT
TTTTTCTGGAAGAGCCCATTTCATCATGTATTAAAGTCCAAATAGATTAT
AAAATTTTCGATTTACAGTTATTTAATGGATTTCCAAGTATATAATGTGT
ATATTATGGCCTGAGATTACTTGATTTCACTGAATCTTTCCTATGTTCCC
TATTCGTGATTTGATTGGTACGGTTTTTATCCAAGATCCTGCATGATTGC
TATGGTTACTTTTGTTGTGCGTTGAGTGAAATGGGTTTGATTGAAGGGTT
TCAAGGAAATAGAGTCATAACAGGTTTACCTTTCGCCGTCCAACATCTTC
CCTGTGTATCCCAGGCTTTATTTACGTCACTGATGGAAATAGAGGAAAAG
AAGCTCGGGGATGTCATACAAAGACTATTTTACTCGGTTTTCACAGCTCA
TAATCCAACCCTTACTCCGTGTATCTCAGGCTTTATTTATATTCCTGATA
GATGCTAGAGCATGCGTATATTATCTGACACTATCAGTAAACATCAATAA
GCCGATAACTACGCAGTTTGTTCACGATCACCAATATATATTTCTTTTCA
GACAGAAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATC
GGATTCTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGT
GTGATAATTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAA
ATGTGGCTGAGAATTGATTTGGGTGGAATGAAACAAATTAAATTTATTGA
TATTTTCGATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTA
CAGATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGC
AGTACTATAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGT
TTGTAACAAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCA
ATGGATGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACA
AAATAAACTTTTACTATATCATACAGGATTTTTTGCAAAATAGTATACTG
AAAAAAGTAAGGCAATTTTTAGAAAGAGAAAAATATCAAGTCATAAATGC
ACAAAGGTATGACTTTTCAACACTGGAGACCAATTAAGTTCTCCTAAAAT
AAGTTAACTCAAAACTTTTGTTGATTTAAAAGATTAAAAAGTTTAAAAGA
TAAAATCAATTTAAGAAAAAGTTTTCTTCGCTTTATACTGCTTAAAAAAA
TACATTCAATTAGCCTTTCATTAACGAGAAATTTGACTGACAAGCTGCAT
AGGTTTGACCATAAAAATGGGAAATTTCATCAAAGTGACAAAAAAGAGAG
CTGTCAATCAAAACTTAATAACTTATTTTTGATTTCAAAATTTTTATCTC
GAGTTTTTTTTAATCTGCAATCTGGAAGCCTCATATTTCTAAAACAAAAC
ACTGCTTTCGGAATGAAATTTTCGACATTGAATACTGAATAAATGTGCCT
TCAAATAATTCAAAATTCAAGTTTTAACAAGTGTTGAAGTTTTTTCGTAA
GCCTAGTTTACTTTTTTGAGTATATACTTTTTTGTGAAACACCCTGTATT
ACTTGCTAATCTCCGAGAAGATCCAGATAACGTTACACACGGCACACAAC
GTTGTTTCAACGTTAATCTAACCTTAAATGGACGTTGTGGACGTTAGATA
AACGTTGAAACAACGTTGTGGGCCAGTTGGGAACGTTACACACGACACGT
AATAGCCAAATTCCATAGAATTTGCGATTTTCTATTCAATTTAACGGGGA
AAATAATTTGAAAATTTAAAGATTTACCTTGGAGAAAAACATGTAAAAAT
CTGAATTTTCTTAAACCAGGCTATTTAGAGCAATTCGAATACTTGGAAAT
GTTTTCAAAA

Coding sequence (CDS) from alignment at sc0000080_pilon:537007..542666-

>MSTRG.11164.1.p1 ID=MSTRG.11164.1.p1|Name=MSTRG.11164.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3792bp|location=Sequence derived from alignment at sc0000080_pilon:537007..542666- (Clytia hemisphaerica_ch_hm2_pilon)
ACAGAAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATCG
GATTCTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTG
TGATAATTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAAA
TGTGGCTGAGAATTGATTTGGGTGGAATGAAACAAATTAAATTTATTGAT
ATTTTCGATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTAC
AGATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCA
GTACTATAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGTT
TGTAACAAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCAA
TGGATGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAA
AATAACATGATTGTGAATGGGAGGAGACATGCATCAACCCAAACAAAAAA
TGTATTCCAAACTACTCTGATGGTTCTTATGAATGTGTTTGCGAGCCTAT
TGGTAAATACGATATTCATTGCACAATTGAGTATGGCTATGTTAAAATGG
TATCACACGACAATCACATTCTCAATGTGACAGCAATCAACATATCATAC
CACAAAACTTCCCAAGAATGCATTCGAGCTTGTCTCAACTTTACAGATTG
TTGGAGCATCAATTTGAAGGAACAGCCAAATAATGAGATTTACGAATGTC
ATATTTTGGATACTGATCGATTTCGAAACGCGTCAAATTTTGTCTCTTCC
TCTACAGGAAATTCTCATTTTTCACTTGATATGATTGATTGTGGAGTAAT
GAATAACATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCG
AAACACAAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGAC
AGAAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATCGGA
TTCTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTGTG
ATAATTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAAATG
TGGCTGAGAATTGATTTGGGTGGAATGAAACAAATTAAATTTATTGATAT
TTTCGATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTACAG
ATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCAGT
ACTATAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGTTTG
TAACAAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCAATG
GATGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAAA
TAACATGATTGTGAATGGGAGGAGACATGCATCAACCCAAACAAAAAATG
TATTCCAAACTACTCTGATGGTTCTTATGAATGTGTTTGCGAGCCTATTG
GTAAATACGATATTCATTGCACAATTGAGTATGGCTATGTTAAAATGGTA
TCACACGACAATCACATTCTCAATGTGACAGCAATCAACATATCATACCA
CAAAACTTCCCAAGAATGCATTCGAGCTTGTCTCAACTTTACAGATTGTT
GGAGCATCAATTTGAAGGAACAGCCAAATAATGAGATTTACGAATGTCAT
ATTTTGGATACTGATCGATTTCGAAACGCGTCAAATTTTGTCTCTTCCTC
TACAGGAAATTCTCATTTTTCACTTGATATGATTGATTGTGGAGTAATGA
ATAACATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGAA
ACACAAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGACAG
AAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATCGGATT
CTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTGTGAT
AATTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAAATGTG
GCTGAGAATTGATTTGGGTGGAATGAAACAAATTAAATTTATTGATATTT
TCGATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTACAGAT
ATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCAGTAC
TATAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGTTTGTA
ACAAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCAATGGA
TGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAAATA
ACATGATTGTGAATGGGAGGAGACATGCATCAACCCAAACAAAAAATGTA
TTCCAAACTACTCTGATGGTTCTTATGAATGTGTTTGCGAGCCTATTGGT
AAATACGATATTCATTGCACAATTGAGTATGGCTATGTTAAAATGGTATC
ACACGACAATCACATTCTCAATGTGACAGCAATCAACATATCATACCACA
AAACTTCCCAAGAATGCATTCGAGCTTGTCTCAACTTTACAGATTGTTGG
AGCATCAATTTGAAGGAACAGCCAAATAATGAGATTTACGAATGTCATAT
TTTGGATACTGATCGATTTCGAAACGCGTCAAATTTTGTCTCTTCCTCTA
CAGGAAATTCTCATTTTTCACTTGATATGATTGATTGTGGAGTAATGAAT
AACATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGAAAC
ACAAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGACAGAA
ACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATCGGATTCT
GGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTGTGATAA
TTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAAATGTGGC
TGAGAATTGATTTGGGTGGAATGAAACAAATTAAATTTATTGATATTTTC
GATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTACAGATAT
TATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCAGTACTA
TAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGTTTGTAAC
AAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCAATGGATG
GCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAAATAAC
ATGATTGTGAATGGGAGGAGACATGCATCAACCCAAACAAAAAATGTATT
CCAAACTACTCTGATGGTTCTTATGAATGTGTTTGCGAGCCTATTGGTAA
ATACGATATTCATTGCACAATTGAGTATGGCTATGTTAAAATGGTATCAC
ACGACAATCACATTCTCAATGTGACAGCAATCAACATATCATACCACAAA
ACTTCCCAAGAATGCATTCGAGCTTGTCTCAACTTTACAGATTGTTGGAG
CATCAATTTGAAGGAACAGCCAAATAATGAGATTTACGAATGTCATATTT
TGGATACTGATCGATTTCGAAACGCGTCAAATTTTGTCTCTTCCTCTACA
GGAAATTCTCATTTTTCACTTGATATGATTGATTGTGGAGTAATGAATAA
CATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGAAACAC
AAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11164MSTRG.11164Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11164.1.p1MSTRG.11164.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11164.1.p1.exon4MSTRG.11164.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11164.1.p1.exon3MSTRG.11164.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11164.1.p1.exon2MSTRG.11164.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11164.1.p1.exon1MSTRG.11164.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080_pilongenomesc0000080_pilon:537007..542666 -