MSTRG.11147.1.p1 (mRNA) -

Overview
NameMSTRG.11147.1.p1
Unique NameMSTRG.11147.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:248478..252225+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11147.1.p1 ID=MSTRG.11147.1.p1|Name=MSTRG.11147.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3748bp|location=Sequence derived from alignment at sc0000080_pilon:248478..252225+ (Clytia hemisphaerica_ch_hm2_pilon)
GGTTATGACTTTTGTTTGCTTAAAGATCTTCCAACCTACTATCAAGTTCT
GAGTAAGTACACGTTTCCTTtataaatccaaaaattttgaagccttcgga
tgttcttaactttttgaggtttaagcctaaaaatgtttgtaatatgtttt
tactgtattttcgccatttttatagtatttttgtcaattttcctaagaaa
ttatgtgttttaaagtctgtgaagccttaaaatgttcttagcttattctt
aacattttggccatcgaagccttatgttcttataaagtttgttcttatta
aaaaaaacgtgtattcttagTATTTCTAGATCATTCAAGGTTTGATTCGA
CATCTATTATTTgctatacgttttttataagaacaaaaaacacaaaaaca
taagccttcgatggctaaaatattaagaatgtaAGAACTATTCGAGACTT
TGAATTTAAGAACTCTaaaaaaaacgatttcttaggaaattgtacAAAAT
ACTCTAAAACAGATATTTGAGAataatttcaagaacattttacggCGCTT
AAAactaagaataagttaagaatatcagaaggcttcaaaattttttgatg
ttattacacgtttttttttataaggaaccttaactttgctctgagcctgg
agttccttatttttacagagaatttcagcctcaaagttccttatcgagtt
ccttatttacatagctgctaagtttggataaccatctcttactgttcctt
aaaacttgttttcttattctcagcctgagcagttcctaaacaattcctta
ttttttggaccatcttgagcctcgagttccttataaacgtgttccttata
taaaaaaaacgtgtatataaaaGGAACGTGTAGACGACAAGCAGAAGCAT
GGCTTGTAAAAATATACACTGTCAAGTACTGTCAaagcgaatcgcaaaaa
atagTGATTTTACACATTTGATATCCATGTAGAAATGCAAGTTCTTCATA
GAGAATACAGAATATGCACgccttttcttttaaaagaataacTTCCATAA
GAATATCAAggtgagatttcagagttagaacaataggcctattgtttaga
acaatagaaaaataagaataatgctcaccctcagccaaaaattactattc
ttataaaaagaaaagcgtgtattctATACTGACcgaagactgcctgaaac
ggcacaaaactccgagtatcggaaaaaaatttgtctttATTCTTGGCTGA
TATACCACTCTACCGATGGTATAGAACACTTTCTTGAATATATTCTATAC
ATTCTTTGAACCTAAAAGTTCCCCTATTACTCTCACTCATCACCTTCATA
GATGAATTGTATGAAGAAGGCGATGTTCTCGAAAACACTTGCTACCATAC
ATGTCCGAATGAATGCGTCCGAAAGTCGTACACCGTCCGAAAATCTACAT
ACCGAATCGGAAGTCAATCTGTATatgaagaaatgaagaaaacaatACCA
AAGTTCAATAACAGAAGTATCAACgagattgaaaaatatatcaggTCAGG
TAGATAATAATCAtgtcggcgatccaaaaaatatcagcaatctgattggt
taaaaagagtataATACATCtcgtattttacatgtacaaaatataaattg
acgagaAGATGTTGTTGCATGTAGAGAtatagcagcaatctaacgccatt
ttgctacaaaagtgccctgcgcttttataacacaaaaagtgcatttttgg
gtcaccgataaaccagtcatcagacatttgctcggaaaatatggaaatat
tttacttgttccggattttccgtatatttatTTCCTTGGAGACAGGATAA
GGGGAAGGCTGGAGATTGTTATGTACTTGAACAAAAACCCTAATCTATTA
TTCTAGTCAGATTTAATCTTTCCTGACTAAATTAGCTGCTACATCCTGTA
GCGTGTGATACTACTCCTGTAGCATGTGACAGTACTCTCTGGTAAAGAGT
tgttaattcttttttattctttttctagTGATAATATCTTGAAAATCCAT
GTTTCGTTTTTCGACAACACGGTTGAGACAGAGGAAATGCAACCAGCCGT
CTCTTGGAATTCTCTCATAGGTAAatttataccttatcggccaaaactta
gtcggccttaattttagttggcccaaatttttagctggccctaattttag
tcaccAagccaaaatttagtcacttttgGCCGATAATGTAATCAATTTTC
TTCGCTACGAATATTGTGTAGTTTACCTTTCAACAAATCAAATGATTATT
TCAAAGAGACCTCTGTGTTACAGACCCAGTGGGACCCCAACATCACTGAA
AATTCtagccaaaatttcgtccccatcCCCATTGAGGAAAATACCCCACA
GTTTCAGACCCACTGGGAAGTTGACTTTGTTTTTACGCCCATTTGAGATT
CAATGAAAAAACTGCACTGAAAACCATCCCCAGTAGACTTTTTGACCTGG
AATCAATAGGATTTCTTTCTCTATTGAGATATAacaatacacccccttct
cacaggccCACTAAGAAcctcttcccactggaaaaattgcccaaaatGTG
TTCGTTCTCACCTTTTATTGCGTCACACCCTGGTACCCTTAGACTTCTTT
CGGGTAATATTATGGTGCGAATAGTGGTTTACTTAATTGTATATTGGTCA
TTCGCATTTAGgaacacctccttctcacagacccggcaggattttttcag
cccAAACTCGATTGGGATTGATATTAGCCAGAagattcagtggggataga
taaaaaagcacaatattttgcagtgaggattcgctttctaattattttca
gcagggacaaaaattggggttcaattttccactggggacaatattttggc
caatttttccagtgggtctgtgagaagtgggtgtggttttgagttttgtt
taagagggttttaggtttaaaactaaTAAAGATATTGAAATGAATATAAA
ACATtcatgaaaattatttaaacgattttaaaatgtcaaaatgtaGACAA
GCTTGGCTACTATAATGGGCCATTTCTCTAATGTTCCcttatggaatttt
tttcaaaatctttctttcagCGACCATGGGTGGAGCTATCGGGCTTGGTC
TCGGATTCAGTTTCATCACCGGATTCGAATttctattcttcttttttgac
gtcattaAATTGGCATGGCAACGACGTAAACAAAAACAAGTACTTGGTAT
GTAAATGGACAATGCACAAAACACAACACAGGTGTTTATTTGGTATTTGT
GAGTCAATATATAAAGGTTGTATCGAGTATATAAAACACGAAAAAGCTAA
GAATTGGCAATCGACAGGGACTGGAACTTGAAAAAGTTACCATCTTAAAC
TTTGATGGTAATAGTTTAAAAGtgcacaaaagaaaaaaaaaatccatcaa
gaAAAGGGGATTTTTCATCCATCATtgacatttttctattttgcagTTAG
GTCATTTTTGGTTTAACCTGACGATGGTTTCATTACGGACAAGACCTTCG
TAAAAATTATATCTTCGTGAtgaatttcaatgaattatAATTAAAAGTAC
CCGCGTGAGAACTTTATATTTAATCATatcgtaaaataaaaagtagaaaT
GAAATATTCATTATATTAAAATGGAAactcagaattttttttttgtgcta
GCGTGTGATAAATGAGGTCACTGTCTGAAATTTcgatgattaaaaaaa

Coding sequence (CDS) from alignment at sc0000080_pilon:248478..252225+

>MSTRG.11147.1.p1 ID=MSTRG.11147.1.p1|Name=MSTRG.11147.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0000080_pilon:248478..252225+ (Clytia hemisphaerica_ch_hm2_pilon)
GGTTATGACTTTTGTTTGCTTAAAGATCTTCCAACCTACTATCAAGTTCT
GAATGAATTGTATGAAGAAGGCGATGTTCTCGAAAACACTTGCTACCATA
CATGTCCGAATGAATGCGTCCGAAAGTCGTACACCGTCCGAAAATCTACA
TACCGAATCGGAAGTCAATCTGTATatgaagaaatgaagaaaacaatACC
AAAGTTCAATAACAGAAGTATCAACgagattgaaaaatatatcagTGATA
ATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTGAGACAGAG
GAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGCGACCATGGGTGG
AGCTATCGGGCTTGGTCTCGGATTCAGTTTCATCACCGGATTCGAATttc
tattcttcttttttgacgtcattaAATTGGCATGGCAACGACGTAAACAA
AAACAAGTACTTGGTATGTAAGGTTATGACTTTTGTTTGCTTAAAGATCT
TCCAACCTACTATCAAGTTCTGAATGAATTGTATGAAGAAGGCGATGTTC
TCGAAAACACTTGCTACCATACATGTCCGAATGAATGCGTCCGAAAGTCG
TACACCGTCCGAAAATCTACATACCGAATCGGAAGTCAATCTGTATatga
agaaatgaagaaaacaatACCAAAGTTCAATAACAGAAGTATCAACgaga
ttgaaaaatatatcagTGATAATATCTTGAAAATCCATGTTTCGTTTTTC
GACAACACGGTTGAGACAGAGGAAATGCAACCAGCCGTCTCTTGGAATTC
TCTCATAGCGACCATGGGTGGAGCTATCGGGCTTGGTCTCGGATTCAGTT
TCATCACCGGATTCGAATttctattcttcttttttgacgtcattaAATTG
GCATGGCAACGACGTAAACAAAAACAAGTACTTGGTATGTAAGGTTATGA
CTTTTGTTTGCTTAAAGATCTTCCAACCTACTATCAAGTTCTGAATGAAT
TGTATGAAGAAGGCGATGTTCTCGAAAACACTTGCTACCATACATGTCCG
AATGAATGCGTCCGAAAGTCGTACACCGTCCGAAAATCTACATACCGAAT
CGGAAGTCAATCTGTATatgaagaaatgaagaaaacaatACCAAAGTTCA
ATAACAGAAGTATCAACgagattgaaaaatatatcagTGATAATATCTTG
AAAATCCATGTTTCGTTTTTCGACAACACGGTTGAGACAGAGGAAATGCA
ACCAGCCGTCTCTTGGAATTCTCTCATAGCGACCATGGGTGGAGCTATCG
GGCTTGGTCTCGGATTCAGTTTCATCACCGGATTCGAATttctattcttc
ttttttgacgtcattaAATTGGCATGGCAACGACGTAAACAAAAACAAGT
ACTTGGTATGTAAGGTTATGACTTTTGTTTGCTTAAAGATCTTCCAACCT
ACTATCAAGTTCTGAATGAATTGTATGAAGAAGGCGATGTTCTCGAAAAC
ACTTGCTACCATACATGTCCGAATGAATGCGTCCGAAAGTCGTACACCGT
CCGAAAATCTACATACCGAATCGGAAGTCAATCTGTATatgaagaaatga
agaaaacaatACCAAAGTTCAATAACAGAAGTATCAACgagattgaaaaa
tatatcagTGATAATATCTTGAAAATCCATGTTTCGTTTTTCGACAACAC
GGTTGAGACAGAGGAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAG
CGACCATGGGTGGAGCTATCGGGCTTGGTCTCGGATTCAGTTTCATCACC
GGATTCGAATttctattcttcttttttgacgtcattaAATTGGCATGGCA
ACGACGTAAACAAAAACAAGTACTTGGTATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11147MSTRG.11147Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11147.1.p1MSTRG.11147.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11147.1.p1.exon1MSTRG.11147.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11147.1.p1.exon2MSTRG.11147.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11147.1.p1.exon3MSTRG.11147.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11147.1.p1.exon4MSTRG.11147.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080_pilongenomesc0000080_pilon:248478..252225 +