MSTRG.11143.4.p1 (mRNA) -

Overview
NameMSTRG.11143.4.p1
Unique NameMSTRG.11143.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:158880..163787-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11143.4.p1 ID=MSTRG.11143.4.p1|Name=MSTRG.11143.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4908bp|location=Sequence derived from alignment at sc0000080_pilon:158880..163787- (Clytia hemisphaerica_ch_hm2_pilon)
CTCAAATATTCGATTAGAAATCCCCCTGATGTGTTTTATCTCACACGTGT
TTACACAAGCAGTCTGGGTACTAGCTACTTAACACGTTATATATACAGAG
GATTTGCAAGACAGACATTCACATTGTTGTTGGTATTTGTCGTCGTAGCA
TCTCATATTTTCGCAGAGCTCTTTATTCATCATGAATAAGTTTATAATCA
TCGCTTTGGTAAGTTGACTTTGAATATGGCATAGGGGATAGAGGATATAA
CATTTTTTGGAAATTTACCCCGCGGACAAGCATTCCTAGACATTAGCCTC
AAACAGAGCAAAATTACCCCAAACAGAGCAAGTTCACCCACCGCAAGTGA
ACTTTCAAAATCTGCAGCAAGTTTGATGAAATATTTGAGATAAAAATCTC
ATTTGCTCAAAAGTGGGGAGGCTCAAGTCTCTCCAGTCTCCCCGCTTCCT
TCCACCGGGCCTGAGAATGATCTAAAATTGGATCTTCATTTTTTTTTAGA
GTTTTATCCTTTCATTAAATGCAACTTTTCTTTTTATAATCAGGTTGGTT
TGGCCTGTTTGGCTTTGTCAGAGGCTAGCAGTAAGTAGAATTGAAAATTT
GATTTCATGTCGCTTACAAACACCCCTTTAGTGTAGTGGCTTGGCTTGAA
AAAATTCATTTTTTCATTTTTTATATTTTCATCTTAATTGCCATCATAAA
ATACAACTTTGGGCCAAATATATTTTGAATTTCCGGTTATGACATCATCA
CTAAAATGGCCTAAAAAAGAGTATTCCACCGATGAAAATTTAGGGGAATT
TTTTTATGTGGTTAAAGGATACTATAAGGAGGTGCAAAATTTTAAGCCGG
GTTATTTTGAATTTCCTACAAAGAGTGCTTTTTTAGCTGGCACGACCATA
CTACCTTTATGAGTGACCAAAAGAATTTTGATTCCCCAGGTTGTCTATGC
ATGAAAGGTTAGGATGTGTGCCGCCCTTAAAAATACCTTTTTGGACCTGG
AAGTCGTTGCAAGGATTGAAAGTTTCAAGTTTTTAATTTTTGAAAGATTG
AAATTTTGTTAAATTAGTCCCAACAACAGTCGTAAAAATTCACAAAATTT
TGCAACATTATTTTTCATAAAAACACGCTATACATTATTTTTCAGAATGT
AGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTCCAAAGAGATGC
AAATGGTTGTGAAGTCTGCAAATGCAATCGTAAGATCATTGATTTCAAAC
TCCGAATAGGCAAGACCCGAGACTCTTGGATGGGAAATGAATCCACTTAT
TTCTCATCCAAAATGCGTGACCCCGTGATTTTTACATAAACGCCAGAAAA
GTTTTCACGCACCTGCCCACGTGAGTACGTTCGAAAAGGTTTATTGAGGG
GCATTACGCTAAGGTTTGTAACAACATCTGCATGGATACGAGCGCTTACT
AAACTTGCCTTTATTTATAGAATGTCCACAACAGCAATGCCGTATGTTCT
GCAAGAACGGGTTCAAAAAAGATGTCAATGGATGTGAGATCTGCAAATGC
AACGGTAAGGGAATAACTATTTAGAATTGATATTTATTTAATGGATGCAC
ATCCTGTTTTATGGGAAATACGAACTTTAATATACCTGAGCTTTGATTGG
ATTTAATTTCGCGAGCCAAAAAATCACGAAATTTTCTGGATTTATTTTGA
CGAATTGGCGTTTTCAAATATTTCACGTTGTATTTTTGTAAAAACGCAAA
TAATTTTATCTGATTTAAAGTATGTCTCAGTAAAAGATTTCAGCCTATGC
TGAACTAAATGTCATCACTGTAATACTTATGTAAACAGCGTTAGTGCGTT
GATTCGGTAAGCGGCAAATTGTCATCTTCTTCTCATTCTTCGTTCTAGAA
TGTCCAATGCAAAGGTGTCGTATGAGATGTGAATATGGCTTCAAGAAGGA
TGAAGAAGGCTGTGAAATCTGTGAATGCAATGGTACTAAAAAGATCGATT
TTTTAACAATTGTACCTAACTTCTGTATTTCTGCATATGATTTTTATGTG
ATCTTAATAGTTCCAGGGAGGGGAGAGAAAAAAAATATTTTGGGTTCCAA
ATGTCCTCTTATGCAGTTTTACAGCGTAGGAAAAATTGAATTTATAATGT
TTTTAAGGGAGGTATCTTATTCTTAAGTAACTGGTGGAATGGTCGGTGGT
GACTAACATATCCCTTCAACAATATTGCAAATAAAGGAAAGGATTCACAG
TTCATGTCCTAAATATCAATTTCTTTTTGTATTTCACAGAATGCCCACAA
AGACAATGCAGAATGCGATGCCCAAATGGATTTGAGCAGACAAATTCTTT
TGATGCAAAATTGCATTAAGGATGGATCAGTTCATAAATATCAATTTGAT
TTCATTTGAAATATTCAAGGAGATCTGACAAATGCAAAAAAATGGCAAGG
TCAGAAAAATAAGAAAATGGCCCTTCATGGTGTTAAAAATATGTTAAAAA
TATTTCATAAACAAATTCAAAACTTTGCAAAATCAAAAGATTTCTGAATT
CAAGATAACTGTTTTTCTCCAATTTTATTTCAGAAGTCGCCCCAATGATG
GACGAAAAATGTCCAGAAAGACAATGCCGTATGTTCTGCAAGAACGGATT
CCAAAAGAACGCCAACGGATGTGAAATCTGCAAATGTAACAGTATGCAAC
TATATCAATTATTTTAGTTTAATATTTGTTAGATTTGTGAAACTTGTAAG
CCATTGGCACTCTCTAACACTCTGCTACTTCATTCAATTCAAATGATCTT
CAAAACTTAAATAATGCAAATCTGACACTTTTTACCGAAAGAAAATCACT
TTTCACTAAAACTAAATTTTTCATCCTGACAGAATGCCCACAAAGACAAT
GCAGAATGCGATGCCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAA
ATCTGTCAATGCAAAGGTTAGAAAAAAGTTTTTAAAAAATATTGTTCAAT
TTCTATGAGAAAAGCGTTCACAGTATTTTTTCAGGTTATCTAACGGTAAG
AAAGCAACCCAAATTTGATTTAGGTCCCATAATCTGACTTATGTTTTATA
TTACATAAACAGGCAACCGAACTCTCAATTATATTTTAGAAGTTGCTCCA
ATGATGGACGAAAAATGCCCAGAAAGACAATGCCGTATGTTCTGCAAGAA
CGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAGTGCAATGGTA
TACAACTATTAAACACGCCTAATTCCAGATAGCAATAGTATTTTGGAGAG
AGGCTGAATGACATAATTCAAAGTCAGGGGAGAATTTCCACGCCTGACAA
ATAATACTTGATACAGCTCAAAGCTTCAAACAATTTTGAATTTTGAATTA
CCATCTAGCCTAAACTAGCTGTTTGTAAACCCGGGGTCTTCGAAACACAA
AAATGAAAAGTGAGAAAAAGTTGACACCCTGGGTATTCAGTGTACTGTTT
CTATATCATTTAATTTATCCATGTCAGTGTACCAACCCCTTTCCACAGAC
CCATTGGGATCCCTTCCCACTGAAGGGAAAGTCCAAAAAGTCGTCCCGGT
GAAAATTATTCTCCAATTTTTATCCCCACTGAAAATAATCAATTAAACCA
ATCCTCACTGCAAAATGTTATGCTATTTTTTCCATCCCCACTGAAATTTC
TGACTTGAAAACAAAAGAATTGAAAGCCCAAGTCATAAAAAATACGGGAA
TATCAATCCCAATCGAGTTTCAATCTGTTATTTTTATCCCCACTGGCTGA
AAAAATCCTACCGGGTCTGTGAGCAGGGGGTGTAGTGTACTGTTTCTAAG
AGGCTATTATTATCAGTGCTTGGGCAATGTTAATATATCTATATTGCATG
TTTTTTAGAATGTCCACAACAACAATGTCGTATGTTCTGCAAAAATGGAT
TCCAAAAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACGGTAAGGGA
ACTGTTTAGTTGATTCAACTTGCCTGTATCACTAACCAAATAAAAGGGAG
TAATCGAAAGTGCTAAATCAGGAATAATGGAATATATCTTGCATGTTGTC
CAAGAATAGGACAATCCTAATGCTGAAAGCTCAGGCGACTCTTATATGAA
AGCTTAATCTAAATACTGTAGGACAGTTAAACTTTCTCGTTCCCAGGGAA
GTTTTCCTATAGCCACTATAGCGGAAAAAGGCCAACACGCGGGGAATGTA
AAAGTGATTTAAATTTGTTAGGTGTTGTGTATTATCTACGTGTTTGTACG
CAGCAAAAAAGCAGGTATACCCTTAAAAACACCGGAAAGATCTTGGAAAT
GCCACCAAAAATGTTTCCTCTGGATTGGAGAGAGTTTAGCTGTCCTACGG
TACCTTGGGAGGTGTAACTTGTTCTCTGCAACAAAATTACTTATAAATAT
TCTCTACAGAATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGGA
TTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGCAAAGGTTAGAA
AAGACATTTGATTTGGTTAAATATTTTCTAAATATTCTGTGGTCTGAATC
TAGCCTAGAGTTAAGGAGATCTTTGTAAGTTAAAAAGCTGAGATTTTCTT
TTACTTCCATCTCATTCCCCTCTAAAATTTACCGTTTCGTTGAGATGATT
AAAGGAAAATTCAATCTCTTTTCTCTTTTTCAGAAGTCGCACCAATGTTT
TAAGAAGTGGACGAACTTGCGGAGTTATATAGATTTTGGCTATAGTTTTT
TTATACATTTTAGCAAATTTTGAGATATGACAAAATATAATAATATTCGA
AATAATATTAAAATTTTAATCTTTATCTTCGAAGAATTAGACTTCTTGTG
TATCTTGT

Coding sequence (CDS) from alignment at sc0000080_pilon:158880..163787-

>MSTRG.11143.4.p1 ID=MSTRG.11143.4.p1|Name=MSTRG.11143.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0000080_pilon:158880..163787- (Clytia hemisphaerica_ch_hm2_pilon)
AAGTCGCACCAATGTTTTAAAATGCCCACAAAGACAATGCAGAATGCGAT
GTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGC
AAAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAATATGGCTTCAA
GAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGAATGTCCACAAC
AGCAATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGA
TGTGAGATCTGCAAATGCAACGAATGTAGTCCAGTTATGTGCAAAATGTT
TTGCAAAAATGGATTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAAT
GCAATCGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAATGAATA
AGTTTATAATCATCGCTTTGAAGTCGCACCAATGTTTTAAAATGCCCACA
AAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATG
GTTGCCAAATCTGCCAATGCAAAGAATGTCCAATGCAAAGGTGTCGTATG
AGATGTGAATATGGCTTCAAGAAGGATGAAGAAGGCTGTGAAATCTGTGA
ATGCAATGAATGTCCACAACAGCAATGCCGTATGTTCTGCAAGAACGGGT
TCAAAAAAGATGTCAATGGATGTGAGATCTGCAAATGCAACGAATGTAGT
CCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTCCAAAGAGATGCAAA
TGGTTGTGAAGTCTGCAAATGCAATCGTTGGTTTGGCCTGTTTGGCTTTG
TCAGAGGCTAGCAATGAATAAGTTTATAATCATCGCTTTGAAGTCGCACC
AATGTTTTAAAATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGG
ATTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGCAAAGAATGTC
CAATGCAAAGGTGTCGTATGAGATGTGAATATGGCTTCAAGAAGGATGAA
GAAGGCTGTGAAATCTGTGAATGCAATGAATGTCCACAACAGCAATGCCG
TATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGATGTGAGATCT
GCAAATGCAACGAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAAT
GGATTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCGTTG
GTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAATGAATAAGTTTATAAT
CATCGCTTTGAAGTCGCACCAATGTTTTAAAATGCCCACAAAGACAATGC
AGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAAT
CTGCCAATGCAAAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAAT
ATGGCTTCAAGAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGAA
TGTCCACAACAGCAATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGA
TGTCAATGGATGTGAGATCTGCAAATGCAACGAATGTAGTCCAGTTATGT
GCAAAATGTTTTGCAAAAATGGATTCCAAAGAGATGCAAATGGTTGTGAA
GTCTGCAAATGCAATCGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTA
GCAATGAATAAGTTTATAATCATCGCTTTGAAGTCGCACCAATGTTTTAA
AATGCCCACAAAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACAA
GACAAAAATGGTTGCCAAATCTGCCAATGCAAAGAATGTCCAATGCAAAG
GTGTCGTATGAGATGTGAATATGGCTTCAAGAAGGATGAAGAAGGCTGTG
AAATCTGTGAATGCAATGAATGTCCACAACAGCAATGCCGTATGTTCTGC
AAGAACGGGTTCAAAAAAGATGTCAATGGATGTGAGATCTGCAAATGCAA
CGAATGTAGTCCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTCCAAA
GAGATGCAAATGGTTGTGAAGTCTGCAAATGCAATCGTTGGTTTGGCCTG
TTTGGCTTTGTCAGAGGCTAGCAATGAATAAGTTTATAATCATCGCTTTG
AAGTCGCACCAATGTTTTAAAATGCCCACAAAGACAATGCAGAATGCGAT
GTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGC
AAAGAATGTCCAATGCAAAGGTGTCGTATGAGATGTGAATATGGCTTCAA
GAAGGATGAAGAAGGCTGTGAAATCTGTGAATGCAATGAATGTCCACAAC
AGCAATGCCGTATGTTCTGCAAGAACGGGTTCAAAAAAGATGTCAATGGA
TGTGAGATCTGCAAATGCAACGAATGTAGTCCAGTTATGTGCAAAATGTT
TTGCAAAAATGGATTCCAAAGAGATGCAAATGGTTGTGAAGTCTGCAAAT
GCAATCGTTGGTTTGGCCTGTTTGGCTTTGTCAGAGGCTAGCAATGAATA
AGTTTATAATCATCGCTTTGAAGTCGCACCAATGTTTTAAAATGCCCACA
AAGACAATGCAGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATG
GTTGCCAAATCTGCCAATGCAAAGAATGTCCAATGCAAAGGTGTCGTATG
AGATGTGAATATGGCTTCAAGAAGGATGAAGAAGGCTGTGAAATCTGTGA
ATGCAATGAATGTCCACAACAGCAATGCCGTATGTTCTGCAAGAACGGGT
TCAAAAAAGATGTCAATGGATGTGAGATCTGCAAATGCAACGAATGTAGT
CCAGTTATGTGCAAAATGTTTTGCAAAAATGGATTCCAAAGAGATGCAAA
TGGTTGTGAAGTCTGCAAATGCAATCGTTGGTTTGGCCTGTTTGGCTTTG
TCAGAGGCTAGCAATGAATAAGTTTATAATCATCGCTTTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11143MSTRG.11143Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11143.4.p1MSTRG.11143.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11143.4.p1.exon7MSTRG.11143.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.4.p1.exon6MSTRG.11143.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.4.p1.exon5MSTRG.11143.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.4.p1.exon4MSTRG.11143.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.4.p1.exon3MSTRG.11143.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.4.p1.exon2MSTRG.11143.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.4.p1.exon1MSTRG.11143.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080_pilongenomesc0000080_pilon:158880..163787 -