MSTRG.11143.3.p2 (mRNA) -

Overview
NameMSTRG.11143.3.p2
Unique NameMSTRG.11143.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:158880..161215-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11143.3.p2 ID=MSTRG.11143.3.p2|Name=MSTRG.11143.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2336bp|location=Sequence derived from alignment at sc0000080_pilon:158880..161215- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTATTTCAGAAGTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGAC
AATGCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGT
GAAATCTGCAAATGTAACAGTATGCAACTATATCAATTATTTTAGTTTAA
TATTTGTTAGATTTGTGAAACTTGTAAGCCATTGGCACTCTCTAACACTC
TGCTACTTCATTCAATTCAAATGATCTTCAAAACTTAAATAATGCAAATC
TGACACTTTTTACCGAAAGAAAATCACTTTTCACTAAAACTAAATTTTTC
ATCCTGACAGAATGCCCACAAAGACAATGCAGAATGCGATGCCCAAATGG
ATTTGAACAAGACAAAAATGGTTGCCAAATCTGTCAATGCAAAGGTTAGA
AAAAAGTTTTTAAAAAATATTGTTCAATTTCTATGAGAAAAGCGTTCACA
GTATTTTTTCAGGTTATCTAACGGTAAGAAAGCAACCCAAATTTGATTTA
GGTCCCATAATCTGACTTATGTTTTATATTACATAAACAGGCAACCGAAC
TCTCAATTATATTTTAGAAGTTGCTCCAATGATGGACGAAAAATGCCCAG
AAAGACAATGCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAAC
GGATGTGAAATCTGCAAGTGCAATGGTATACAACTATTAAACACGCCTAA
TTCCAGATAGCAATAGTATTTTGGAGAGAGGCTGAATGACATAATTCAAA
GTCAGGGGAGAATTTCCACGCCTGACAAATAATACTTGATACAGCTCAAA
GCTTCAAACAATTTTGAATTTTGAATTACCATCTAGCCTAAACTAGCTGT
TTGTAAACCCGGGGTCTTCGAAACACAAAAATGAAAAGTGAGAAAAAGTT
GACACCCTGGGTATTCAGTGTACTGTTTCTATATCATTTAATTTATCCAT
GTCAGTGTACCAACCCCTTTCCACAGACCCATTGGGATCCCTTCCCACTG
AAGGGAAAGTCCAAAAAGTCGTCCCGGTGAAAATTATTCTCCAATTTTTA
TCCCCACTGAAAATAATCAATTAAACCAATCCTCACTGCAAAATGTTATG
CTATTTTTTCCATCCCCACTGAAATTTCTGACTTGAAAACAAAAGAATTG
AAAGCCCAAGTCATAAAAAATACGGGAATATCAATCCCAATCGAGTTTCA
ATCTGTTATTTTTATCCCCACTGGCTGAAAAAATCCTACCGGGTCTGTGA
GCAGGGGGTGTAGTGTACTGTTTCTAAGAGGCTATTATTATCAGTGCTTG
GGCAATGTTAATATATCTATATTGCATGTTTTTTAGAATGTCCACAACAA
CAATGTCGTATGTTCTGCAAAAATGGATTCCAAAAGAACGCCAACGGCTG
TGAGATCTGCAAATGCAACGGTAAGGGAACTGTTTAGTTGATTCAACTTG
CCTGTATCACTAACCAAATAAAAGGGAGTAATCGAAAGTGCTAAATCAGG
AATAATGGAATATATCTTGCATGTTGTCCAAGAATAGGACAATCCTAATG
CTGAAAGCTCAGGCGACTCTTATATGAAAGCTTAATCTAAATACTGTAGG
ACAGTTAAACTTTCTCGTTCCCAGGGAAGTTTTCCTATAGCCACTATAGC
GGAAAAAGGCCAACACGCGGGGAATGTAAAAGTGATTTAAATTTGTTAGG
TGTTGTGTATTATCTACGTGTTTGTACGCAGCAAAAAAGCAGGTATACCC
TTAAAAACACCGGAAAGATCTTGGAAATGCCACCAAAAATGTTTCCTCTG
GATTGGAGAGAGTTTAGCTGTCCTACGGTACCTTGGGAGGTGTAACTTGT
TCTCTGCAACAAAATTACTTATAAATATTCTCTACAGAATGCCCACAAAG
ACAATGCAGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATGGTT
GCCAAATCTGCCAATGCAAAGGTTAGAAAAGACATTTGATTTGGTTAAAT
ATTTTCTAAATATTCTGTGGTCTGAATCTAGCCTAGAGTTAAGGAGATCT
TTGTAAGTTAAAAAGCTGAGATTTTCTTTTACTTCCATCTCATTCCCCTC
TAAAATTTACCGTTTCGTTGAGATGATTAAAGGAAAATTCAATCTCTTTT
CTCTTTTTCAGAAGTCGCACCAATGTTTTAAGAAGTGGACGAACTTGCGG
AGTTATATAGATTTTGGCTATAGTTTTTTTATACATTTTAGCAAATTTTG
AGATATGACAAAATATAATAATATTCGAAATAATATTAAAATTTTAATCT
TTATCTTCGAAGAATTAGACTTCTTGTGTATCTTGT

Coding sequence (CDS) from alignment at sc0000080_pilon:158880..161215-

>MSTRG.11143.3.p2 ID=MSTRG.11143.3.p2|Name=MSTRG.11143.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000080_pilon:158880..161215- (Clytia hemisphaerica_ch_hm2_pilon)
AAGTCGCACCAATGTTTTAAAATGCCCACAAAGACAATGCAGAATGCGAT
GTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGCCAATGC
AAAGAATGTCCACAACAACAATGTCGTATGTTCTGCAAAAATGGATTCCA
AAAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACGTTTATTTCAGAA
GTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCGTATGTT
CTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCTGCAAAT
GTAACAAAGTCGCACCAATGTTTTAAAATGCCCACAAAGACAATGCAGAA
TGCGATGTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAAATCTGC
CAATGCAAAGAATGTCCACAACAACAATGTCGTATGTTCTGCAAAAATGG
ATTCCAAAAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACGTTTATT
TCAGAAGTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACAATGCCG
TATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTGAAATCT
GCAAATGTAACAAAGTCGCACCAATGTTTTAAAATGCCCACAAAGACAAT
GCAGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATGGTTGCCAA
ATCTGCCAATGCAAAGAATGTCCACAACAACAATGTCGTATGTTCTGCAA
AAATGGATTCCAAAAGAACGCCAACGGCTGTGAGATCTGCAAATGCAACG
TTTATTTCAGAAGTCGCCCCAATGATGGACGAAAAATGTCCAGAAAGACA
ATGCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACGGATGTG
AAATCTGCAAATGTAACAAAGTCGCACCAATGTTTTAAAATGCCCACAAA
GACAATGCAGAATGCGATGTCCAAATGGATTTGAACAAGACAAAAATGGT
TGCCAAATCTGCCAATGCAAAGAATGTCCACAACAACAATGTCGTATGTT
CTGCAAAAATGGATTCCAAAAGAACGCCAACGGCTGTGAGATCTGCAAAT
GCAACGTTTATTTCAGAAGTCGCCCCAATGATGGACGAAAAATGTCCAGA
AAGACAATGCCGTATGTTCTGCAAGAACGGATTCCAAAAGAACGCCAACG
GATGTGAAATCTGCAAATGTAACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11143MSTRG.11143Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11143.3.p2MSTRG.11143.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11143.3.p2.exon4MSTRG.11143.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.3.p2.exon3MSTRG.11143.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.3.p2.exon2MSTRG.11143.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11143.3.p2.exon1MSTRG.11143.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080_pilongenomesc0000080_pilon:158880..161215 -