MSTRG.11116.1.p2 (mRNA) -

Overview
NameMSTRG.11116.1.p2
Unique NameMSTRG.11116.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:1148543..1157234+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11116.1.p2 ID=MSTRG.11116.1.p2|Name=MSTRG.11116.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8692bp|location=Sequence derived from alignment at sc0000079_pilon:1148543..1157234+ (Clytia hemisphaerica_ch_hm2_pilon)
atcagctaaaaattgaactatCAATAAAAATTATCAAGATGAGAACCAAC
TTTATTCTTGGGTTGCTACTGTTTGTTGCAACCATTGCAACGATGTTGAA
TTCTGCAGAATGCAAAAAGGGGAAAGGACCAAAGGGGAAAGACAAAGGAC
CGAAGGGTAGAGATCGAAAAAGTCGGAAGAAATTCAAACTTGAACCAAAG
GTGAGAAAGATTATCTTTTCTTATTACAATAGTCACCctacaaatatttt
tcacaaaacgCAAATGTCCCTGGCTGACATATCTACCATCCAGATGctaa
aaattttcatccaacattctAAAGCTCTGAAACTCGGGAAAGTTTTTCAA
CATTTGGAatgtttagattacggaattttgcaagaccacgtcaaggattt
tgcagcagAAGGGTCCTCGTCTTCGGGGCTTGGCGAGTCgaactgaaata
ttttcaagtttacGCGCAAGGGTATGTGAACCCAACTAGGGCGgtggcac
atcaaaggccgactatcattcctctccgatgggaaattgaccCGCCCTTT
TaaagagctttagcgtgggcagcCGCCAATCCACCATTTGAATATCAGAT
AAGCCATGTTTTTTAAGTAGACCACAATTCGATGCTGGAAATTTGATCAA
TCAAAACCATTCTCTCTCCTCCTCGTTTCCCGCCATGCCAGTACAACTAT
GGCTCGATAAGCAAAGATGGTGCATTTTCTTGCTTTGCCATGGCTTAAGA
ACAACAGAGTCTCTGTCTAGTGCTTTTAAGATAGCTGTGGGCTTGCGAGT
CATCAAAACTCACCAAATAACGTCCAAAACATCAACTTAACATACAATTA
CCTGAAACAACAAATCAGTTTgttatcaaaatcttttttcactttttaga
aATACTTATGGGACATTGGTTATTCATCTGACCCTGAAATCGAAACGGAA
GACCCTATTCTCGATTACCAAGACTTTTTTGGTCTACCGCTGACCGGTCa
acttgatTACGTCACTATGCGGACAATGGAACAACCAAGATGCGGCATGA
CTGATCCGATAGAAAGATTCAAGGATAAGAAATATGGAAAAGGGAAAGGT
CCAAGACGCGGTCGGAAAGGTGATGGTCGTTTTTTAAAGAATAGCTCATT
ACCTCACACCCACATAGACGATGCTATCGTCCGTTTTAGAGGGTCAGTAA
CCGCAGGAAAATATATAAGAGCATAGTCGTGTGACAGTTTGGAACAAAAg
taaacacctccgccactgctgACTCCGCCCGAATTTATTATCActtctcc
taaactattcccttttttagtgatcttgtgtagacgataggatcgtctaa
caCCCAGACAGAGCCACTTGGACCTTAATTCTACTGAGGGACGTTGGTGC
TTTCAAGAGCGCTTTCAGAATCTTAAAAAACAACTAAACGGTTTCGTTAG
AGTTTTACAGTCCTATGTTCCGATGTAAGAAGTTCTACGTCATAATTCAA
CGGTCATTCTATAAAACGTGGATAAAGATTTACCCTATTTTATTAAAAAG
CCTTCAAGGATTTGATTAGCCcgttagttttttttaagattctgatagcg
ctcttAGAGGAAACAAAAGTTTCGCTCTTCAGCGGTGTTTACTATGAAAG
GACAACAAGTATTTTTTGACTTcatgaattttatttAcaaaggaGGCAAA
CCAAAGAAATATCGAATCCACCGCGGAAAACGTTTCCTTCAACAAGGAAC
AAGCTGGTTACCGTTATTTGAAAAGACTGGTGAGGTAAAACCATTAAGCA
GTTCACCAAATAGAAACAGGCCCGGGTGcttgggcaaaaaggggtacggg
gatgtgctgtgggtcagggtaccttttttcaacTCCATGGGTCCAAGGTG
GGGtcgcaaaaataccaaaaatgaaaaatcagtccctcgtagggtgcctt
tttagggaatttacagaaaatgagtcccatttttcaaacttcagTGGCAC
ACCCCCCTTGGTCGGTAAAGGTAGTGCCCCCCTCCAGGTACGCCAAAACA
GCGTCCATCAAACCCTCCATAACATCCATATTGCGTTCATTTGATGGTCG
TTAAAGCAAAAGCTGCTGTGCCCCGGTACTGGATAGAATTTTCAAGATAA
AAGACCCATAAGGGTCTGTCATACTGTTTAATTCCTCGCCCTTGATCAAT
CAGAATGCAAAGTGGtaaatatttatcattttgttgTCTGTCTTTAGAAC
AAGCTGAAATGGACATTATTAAGTACCGGCACACAACTTCTATCACGTGA
AGAAGTTCTTGTAGAGACGAGAAAAGCATTTCAATTTTGGGCTGATGTCa
ccaatttgatttttgaagaagttcCATTGGAAAATGTTGATAAGAAATAT
GCAAAAGATGAGTAAGTTGTTGGTGgttcactgggcgaaataagagattt
ccaatcctggaaatatcttgaaaatatgatatttccatatacatTAGTAA
AGTAAAgtatatttccaaagtttaggaaatatcatattttcaaaatattt
ccagaAGCTAAGTGGGAGATGAACATGTCACTACTAATTATTTCATTAGC
TTTTTATTGTTGGTAATCTCGAAATCATTGCGACTGGACCTGTTCGTGTG
TTGCTCGTCCTTCTTGACACGCCGTGCTCTCCTATGGGCTGACATCGACC
CAATCTGTAAAAACACGTCATTTTGACCTAACTACTTTACTGGAGCTACT
CATCCTCAATTCTAGTGTGGCTGGTTAAAAATATTCGATTTTCGTGATTC
AAAGTATGTATCATAAATCTTTTGTAAATCAATTAACATAACTTGATAAC
TTTCAGCATTGAGATTTTGGTGAGTTTTGGGAATGAAGACCATGGTGATC
CATATCCTTTTGATGGCCAAGGTGGAACTCTCGCGCATGCGTTCTACCCA
TTGTCCAATGACGGATTATCGGGTGACGTCCACTTTGATGACGATGAAGA
TTATACAATCCAATCGGAACAAGGAACCAATTTATTGTGGGTTGCTACAC
ACGAAATCGGTAAAAATCACTAGCCCAATCGGAATAAGATTGTTTGGATC
TTTAACCAACCTACTAACTATCAAACAGTCTTAGTATCAAAtcactattc
ttgatatgcgtaaatcaaaatgacgtcatattttttaacggaagcactca
AAATAAGTCGGattttgacctccgtgtttctatttttagtaacagagagg
ggtcaaatcccggattttttcgggtgtttccgctagaaaaatgacttacg
catatcaagaatactcttagtctacacaatagacagctccaggcttttag
gccttagtCTTAGTCGtatataggcactgctataggctgCCACTAGTAGc
tcccaccgggaattgcttattaataggtttaaacataatagacaactttc
acaaaagatatTTATCAATAGAGtctaaaacacagctgattggcttaggt
ttcgaaactctctattgtatcattaaaacctcagtgcgcatgcgatttat
ccgaagaatttcaatattcaaaacaagagcagtgctcatatcccgaagag
tagaaGTTTTActctcgaaacgaaggaagatatgacgtagcctagaatAC
TCTCAGGTCTTTATTAGGACCCCCTGTTATAACTATTATCAGATGTCAAA
AGCCCTCATTTTTGTATATACAGGTATCCGTTTATTCCAACCACGCCCTC
GCTGAAAGTATGTTTAGGATATAAGAAGGTTAAGCTAGCAATGAAATTAA
gaaatcttcttttttcaggACACTCACTTGGTTTGGAGCATTCCAATGTA
AACGGAGCTTTAATGTATCCAGTGTACACAGGGTATAGACCAGATTTTGC
ACTAAATATAGATGATATTCTGGGTATTCAGTCAATATACGGTATGTTtt
atcatagtataagaaagccgcggctttcttatactatggttttaTAACCC
TTCTTAAATTGTCCGGTTGATTGTTAATTTTCGAGAATAAAGCTAACACA
GCTCACTTCGAGGATAAGATTGTTTGATTGTCCAACgtcttaaattattt
ttttctttaccaTTCCGTAATATAAAGAAATAGTGTTCAAATACCACTCT
AACCCAACTAAAAGTTATTTACAGTTGATAAGAAAAGCTTGATAAAAACA
AGATATCTGTTCGGTAAAATCTTTCAAGAGCAAACTATAATTGATCTAGG
TATCAAAGAAACTCCCACAACAACGACGATCACCCTTCCCACAACATCGA
CGACCACCCTTCCCACAACATCGACGACCACCCTTCCCACAACATCAACA
ACCACCCCTACAACGTCAACGACCGCCcctacaacaacaacgaccgCTAC
TCcgataacaacaacgaccaacCTTCCAACTACGACGACAACTCTTTCAA
CGACAACGACACCTATGCCTCCCATgacaacgactaccactacaactact
tcaactgaccctattacaacaacaactacgacaacaaccactcctcagac
aacaacgacaacgaccacccctCCAAAAACTACGACCACCCCTGACCCAG
TCCCTCCAGTAACAAAACCAAAATGTCCAAGATCACTTCGGCCTCATGCT
TCTTACTACAACAAGAATACACAAACCATAAATTTATTTACAAGAGATAG
AATCATCACTTATCACAATGATGGTCGTTTAACAGAGGGAGCTACATTCT
CACCACAAGAGAAGAGAAACTTCATTAGCCACCGCATGGCTTCCACACAA
ATTCAATATAAAGGAGAAACTGTGGAATTGCGATTTGTTGGCAGGAGGTG
AGGCACCATCGCTGAAAATAGCAAATACACCCGGATTTAAAACACGGTGG
GACCCCCTACCGAATCCTTCCCCTCTGAGAAGATTACCTAGAATCTCACC
CCACAGGAAAACTACCCTGAGCTCTTATCACAttgaattaattttgaaaa
tactaGGGTTTTAGAATTTCAATTCCCATTGGAACAAGACTTCCTTCAGT
CAATATCGTgatcgtgcaaagttagataataagagaaAAAGGAGAAGATC
GTGCAATTCTTTGTTCCCGTTATTTCAAACAACTTTCAAGAAACAGTGCG
AATACACCCTTCCGAAACGTTTCAAGAGGGTCTCTGAGATAGAGGTGTTA
AAATCAGAGAACCCTCTGACATACCCTTTAAAATTCTTATATTTTATTAT
CTATCTATTAGTCCCCCGAGGAATATGCAAATGATAAAACTCCCTTCGTT
ACAGATTACAGTAAAAGATAATGCTTGGGGatacgagaagtttttttcgt
gttggtgcaatgcaacatgctccatctcaccaacacaagaaaaaaagtgt
gtgtaccatggtttctttttttgttttatgggacaaaaattgagagaaat
acccaaaagacacgctgattttgtccctgggacaaaaatgagatttcact
tttattggtagaaagaaaaatggagtAGAGACATGAGAAAGCGTTCCAGG
TTGGTGGGAtgaagcatgttgcattgcaccaacgcgaaaaaaacttcttg
tgtccccaagcctATACAGTTCTAAATACATGGTTTGTAAtccataaatt
ttcttttttttcgacaGTTACTTCATCATCAAAGATTCAGAAAAACCAGT
AGGCCCTTTCACCTACCATGCAATGAAGAAGCCTAAAGGACATAAAGGGC
CCAAGCGGCGTAAAGGGTCCAAGGGCCACaaaaagaacagtcgaaaagga
aagaaagagaaaaaaaagccTGATTCTAGGCTAAGCAATCCATTGAATAT
TGTTTTACCAAGAAACCATATTGTAACGGCTGCAACTGTTTGGAAAGGTG
GAAAGCTGTATCTGTTTGCTACATCGAGGTAAACAATTTGATTCTATTAT
TCCATTAACTGTTTGACTTCAGAACAATGTTTCCAACATTGTCAGCTGCG
GGAAAACCACAGGTAGACTAGTGACCTGGGAAATCATACACTGGTTTAAC
TTACTAAATGTGGTTCTTATACTACTACTTTTGCAGAGGTTCAAACTAAT
TCAAAGGAAAATTGATACGAGAAAGCCATTCTCTGATTTAACCTGAAATT
TAAGAAAGACCGAATTTACAAgctcaaatttaataaaattcttTTATCTA
TGTTTTAAATTCATCCTGTAGGTATTACACACACGATTTGAGGAAAGGAA
AAACACACAAGAAAAGTCACACCTTAAAACATTTGGTCAAGCGATATCGA
TTGAAAAGCATTAATGCAGCTTTCTGGAATGAGAAGAAGGGACATTTGGT
TCTTTTCTCCAGATCATCAAACTATTTTTACATCCTCCATGaccggtaag
attttttttcccaATATTCATCATTTCACTTCGTGCAGAATAATTATACA
ACACCCAACCCCTcggattttaaaattcttatttacctttatgaaaaact
tttttttctcagttttttaCTCTCTGAGCAAATttgtatgattgaaaatt
tacccttaaagcttttttcacatacacgtaaaattttaccttAGACCTTA
CGTAAAATTGTTCGTCTACATCGTTCGTCTTACGTAATCGTTCGTCTACA
TAATGTCGGTGActttcccaaaagacagccttacgaatgattttccgtaa
ggtctaaagtaaaattttacgagcatgtgaaaaaagcttaaaagcCGCAC
AGTACGTAGCCTCTCTATTCTCTATTCCAACAcgtgatttttttatcatt
ctgtccacggtgtcgaggaaaaagccgtggtcgtctggtactgACAACAC
GGTACACGTGCTGTGGCACGCACCTTGGATGAGCGTTCCCTTTCTCGGGA
GTCATAATAATCAAGCTTTTTGTGTGAAATGATGTCAGGTCGTAATTAAT
ACAAGTGCCCTAAAGTATTAATTGGGTTAATTgtttcaagtctaaaaaag
agCGAATAATAGAGACATAGCTTAACATCGGTCATGTtatacacccctgc
ctcacattCCCTGTAGAGGTAGAAATTTCTTTTGATCTTTTGTCCATACA
TTATAGACTGCTAATTTCtcccattgaatttcaaatggataaagaattca
attttctagttgggctgaaattgtagggtaatTTTTCCATCGGGGACGAA
ATTTAACGAAATTTTCCGGTGGGTAGTGGATccaaccgggtctgtgagac
ggGTGTTATTATGAATCATTGGTTGAAATGTCAGCACTATGAAGTTCTGT
GGATttgtttcatttcttttgtaaatatttttcagccCAAAGAAGAGACA
GAAGAGGGTTGAACGAAAACCACTTCATAAAGAATTGCGTAAAATACCAG
AAAACAAACGATATTGTCGATTATAAAAAGTTCAGGTGAAGAGAAGAGGT
GATATCAGAATTTTCATGAGAACTAAAATCGATGGAACTAACTAAATCAT
AATGAAAAGTAGTCtctaaaacagaaaaagaaaataacatttcaCAACGT
CAAGtttaattttgtaatatttaatttttacaatacaaaaatatacaatg
ctatataatataatacattatCTTTGGAAAAGACctaattgatttgtttt
tgataattttatacattatacacgtttttttttttattagaacatctaaa
atttggctgagcctggatgtgcttatttttttagcaattttcagcctaaa
atgttcttaaatacgTTCTTAATtgttcagactactctaaattgataata
tcatgcaaaataaagagcacttaaaattggtacaatttggacaatatttg
actttcgagtttagaaaatccatgcctaagttgggttaaaactgcttgaa
aagagaaaaaaattgtagtttcttgtcatttttttccaaactgaggctgg
gcatgttcttacgatgttcttaattttttgacgaatttcagcctcaatgt
tcttataaactgggttctaataaaaaaaaaaacgtgtaattttccATGTT
ATCCATTCACCCAAAAAATGTTATGTTTTGTATGTCTCAAAATTCTGAGT
TAATTATTTAGCTTCAGTTTTACAAAAGATAACATCGGTACCACTTCTGT
AACTAGAGCTTTTAGAATGACTTGATTGAGATCAGTGGAGTCTACCGGAT
GGTCTAATCCAAAACGCTTTCAACGAAGTCCAATGGTTTTTCTCGTATTG
ATAGCTTTGCCACCACATGAACTATTTAATGCCGTCTTCTTGGTCATTCC
CAGGGCGGACTTGATCTTTGAAGATGTTGAAGTTGTTGTTTTAAAGGAGT
TGCTTGAAGATTTGTTTGTCGATGATTGTACTGCATTACTGGAAACGCTG
GCGAACGAAGATGCAAAACCATTCCATCCTGAAGACATTTTGGATGATCT
TGCTTATTCCAAAAGGTATATTCCAAAACTATATAAGCTGCTGATAAACG
CCTGTTTAAGAACTTCCAAGGATGCAGCCTCACAATGATACAGTTGTTAG
TTTATTTTCTTCTACTGTATAGAAAGCacttttaaaattgaaactCTTCt
ttttttGTATGATCTCTCTTCGTTGAGTTCCCGTCGAGTTGCAAGAAGCA
AATGATATGAAAGCGGTTGTAAAAGCTCTCATTTATATAGGG

Coding sequence (CDS) from alignment at sc0000079_pilon:1148543..1157234+

>MSTRG.11116.1.p2 ID=MSTRG.11116.1.p2|Name=MSTRG.11116.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000079_pilon:1148543..1157234+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTTTTCTCGTATTGATAGCTTTGCCACCACATGAACTATTTAATGC
CGTCTTCTTGGTCATTCCCAGGGCGGACTTGATCTTTGAAGATGTTGAAG
TTGTTGTTTTAAAGGAGTTGCTTGAAGATTTGTTTGTCGATGATTGTACT
GCATTACTGGAAACGCTGGCGAACGAAGATGCAAAACCATTCCATCCTGA
AGACATTTTGGATGATCTTGCTTATTCCAAAAGGTATATTCCAAAACTAT
ATAAGCTGCTGATAAACGCCTGTTTAAGAACTTCCAAGGATGCAGCCTCA
CAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11116MSTRG.11116Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11116.1.p2.exon1MSTRG.11116.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon2MSTRG.11116.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon3MSTRG.11116.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon4MSTRG.11116.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon5MSTRG.11116.1.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon6MSTRG.11116.1.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon7MSTRG.11116.1.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon8MSTRG.11116.1.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon9MSTRG.11116.1.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11116.1.p2.exon10MSTRG.11116.1.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11116.1.p2MSTRG.11116.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:1148543..1157234 +