MSTRG.11100.1.p1 (mRNA) -

Overview
NameMSTRG.11100.1.p1
Unique NameMSTRG.11100.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:869070..870428+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11100.1.p1 ID=MSTRG.11100.1.p1|Name=MSTRG.11100.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1359bp|location=Sequence derived from alignment at sc0000079_pilon:869070..870428+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGATTTACAAGGTCAAGAACATGTATTCAGAAGAAGAACGTTACATATT
CTTTTTTGCCGATGTACCTCATCTCATCAAGACAGCACGAAACTGCCTTT
GGTCATCAGGCTCTGATTTTTCTCCAAGATTCATGTGGAACAATGGTAAT
TTAAGTTTTTATGTCATTAAGTTATTGGGGGATTTTTGCAACATCACATG
GTGCAAAGTTATACGGGGATTCTTTTTGGAAAAAGGAAAGGTATTCAATA
AGGGATGGGTAAATTTTAAAAGGGAGGGGGTACAGATCTCTCTGCACACT
ATGAGGCTAACCTGGGTAAACCTGGATTTTTTCTTGCCAAGTGAACTAAC
AATCTAATCTAGTTGCTTGGTCTTTGCAAACCAACTTGGACAGTAGGAAT
TGTCCtttagaaattgaaaaactAAAAGTGTTAGTTATCCCTTACTCTTG
ATCTTTCCCTGATCaaattgatggttctggaaTACTGGCATAGTCAAACA
TTTGCTTTGGTACGTTTATATTTTTACCTCTTTTAACTTTTCTTTCAGGT
TCTTACTTGCTTTGGCAGCACATTAAAACTATGTTTTATGAAGACATGGA
CAATGGATTGAAGTTAATGCCAAAACTTACCACAGACCACATTCTTCTCA
ACTCCTACTCTAAAATGAGAGTTTACTTAGCTGCTGAAATTCTCAGTAAT
ACAGTTGGAAACATGTTGTTGAAATTCGGTCCAGAAGAGGCTAAAGGAAC
TGCTGGATTCTGCTTACAAATGGATCagttttttgattgttttaacgTGC
GAAATACCAAAGAACACAAAAAGACTGGAAAACCTTTTTTAGCTCCATAT
ACCACAGTTGATCCTAAAAAGGATGAACGGTTTAGCTTTCttgacaaatt
tttgaaatatctagATGATTGGAAAAAGAGTACAATGGAACGCCCTGGGG
AATTTTCCCAAACCAACCGAAACAATATGTTTTTATCTTTACCAACATAT
AATGGTATCAAAATTAGCATCAGTTCCCTCAAAGAAATCATACCATTTTT
ACTTGACCAATGTGGATTTGACTATGTTCTAACAGAAAAGTTTTGCCAGG
ATGACATTGAAAATTACTTTGGGAAACAGAGGGCAATTGGTCGTTTTAAG
GACAATCCAACTGCAAAAGATTCTATCTACaatgacaatataataaaatc
aCAGTTTGACACACGACCGATTGCTGGTAATGTTAGAAAGGCTGAGTTTG
ATCCCAAAGATATACCAGACACTCCAATCAAAAAACGTAAATGTTAAAAA
TGCTGTATGTAGTACAGTATCGAAGATAAGAGATATTTAATTAAGACTTT
GGTTATAGA

Coding sequence (CDS) from alignment at sc0000079_pilon:869070..870428+

>MSTRG.11100.1.p1 ID=MSTRG.11100.1.p1|Name=MSTRG.11100.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000079_pilon:869070..870428+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGATTTACAAGGTCAAGAACATGTATTCAGAAGAAGAACGTTACATATT
CTTTTTTGCCGATGTACCTCATCTCATCAAGACAGCACGAAACTGCCTTT
GGTCATCAGGCTCTGATTTTTCTCCAAGATTCATGTGGAACAATGGTTCT
TACTTGCTTTGGCAGCACATTAAAACTATGTTTTATGAAGACATGGACAA
TGGATTGAAGTTAATGCCAAAACTTACCACAGACCACATTCTTCTCAACT
CCTACTCTAAAATGAGAGTTTACTTAGCTGCTGAAATTCTCAGTAATACA
GTTGGAAACATGTTGTTGAAATTCGGTCCAGAAGAGGCTAAAGGAACTGC
TGGATTCTGCTTACAAATGGATCagttttttgattgttttaacgTGCGAA
ATACCAAAGAACACAAAAAGACTGGAAAACCTTTTTTAGCTCCATATACC
ACAGTTGATCCTAAAAAGGATGAACGGTTTAGCTTTCttgacaaattttt
gaaatatctagATGATTGGAAAAAGAGTACAATGGAACGCCCTGGGGAAT
TTTCCCAAACCAACCGAAACAATATGTTTTTATCTTTACCAACATATAAT
GGTATCAAAATTAGCATCAGTTCCCTCAAAGAAATCATACCATTTTTACT
TGACCAATGTGGATTTGACTATGTTCTAACAGAAAAGTTTTGCCAGGATG
ACATTGAAAATTACTTTGGGAAACAGAGGGCAATTGGTCGTTTTAAGGAC
AATCCAACTGCAAAAGATTCTATCTACaatgacaatataataaaatcaCA
GTTTGACACACGACCGATTGCTGGTAATGTTAGAAAGGCTGAGTTTGATC
CCAAAGATATACCAGACACTCCAATCAAAAAACGTAAATGTTAATTGATT
TACAAGGTCAAGAACATGTATTCAGAAGAAGAACGTTACATATTCTTTTT
TGCCGATGTACCTCATCTCATCAAGACAGCACGAAACTGCCTTTGGTCAT
CAGGCTCTGATTTTTCTCCAAGATTCATGTGGAACAATGGTTCTTACTTG
CTTTGGCAGCACATTAAAACTATGTTTTATGAAGACATGGACAATGGATT
GAAGTTAATGCCAAAACTTACCACAGACCACATTCTTCTCAACTCCTACT
CTAAAATGAGAGTTTACTTAGCTGCTGAAATTCTCAGTAATACAGTTGGA
AACATGTTGTTGAAATTCGGTCCAGAAGAGGCTAAAGGAACTGCTGGATT
CTGCTTACAAATGGATCagttttttgattgttttaacgTGCGAAATACCA
AAGAACACAAAAAGACTGGAAAACCTTTTTTAGCTCCATATACCACAGTT
GATCCTAAAAAGGATGAACGGTTTAGCTTTCttgacaaatttttgaaata
tctagATGATTGGAAAAAGAGTACAATGGAACGCCCTGGGGAATTTTCCC
AAACCAACCGAAACAATATGTTTTTATCTTTACCAACATATAATGGTATC
AAAATTAGCATCAGTTCCCTCAAAGAAATCATACCATTTTTACTTGACCA
ATGTGGATTTGACTATGTTCTAACAGAAAAGTTTTGCCAGGATGACATTG
AAAATTACTTTGGGAAACAGAGGGCAATTGGTCGTTTTAAGGACAATCCA
ACTGCAAAAGATTCTATCTACaatgacaatataataaaatcaCAGTTTGA
CACACGACCGATTGCTGGTAATGTTAGAAAGGCTGAGTTTGATCCCAAAG
ATATACCAGACACTCCAATCAAAAAACGTAAATGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11100MSTRG.11100Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11100.1.p1.exon1MSTRG.11100.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11100.1.p1.exon2MSTRG.11100.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11100.1.p1MSTRG.11100.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:869070..870428 +