MSTRG.11090.1.p1 (mRNA) -

Overview
NameMSTRG.11090.1.p1
Unique NameMSTRG.11090.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:720516..721850-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11090.1.p1 ID=MSTRG.11090.1.p1|Name=MSTRG.11090.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1335bp|location=Sequence derived from alignment at sc0000079_pilon:720516..721850- (Clytia hemisphaerica_ch_hm2_pilon)
AGATGAAAGTTCGAGTAATTTCCCACCTGAGAGAAAGTCTAGTGAACCGC
ATGTATTGGACGATGTTGAATGGGAGCGAAGCCTGCAATGGATTCGAGAA
GGACATTGTAAGTTTTAGTGTATAAGGTTTTAATTTCGATACTGGACAAA
TAGTTTCAAGCCAGGTAAGTCATCGTAAGGCCATGTTCCGTTCCGTTCCA
AAACAAAAGAAGCCGTTTTATTGGCTAATTGTAGCGGTTACGACAATTAT
AACCAACAAAACAGAACCATTATGTGTCAGCAGGCCTGAATTATGAAAAT
TCTAGTTTGACATTACATATGATATGACTAATGTTTTAAATTTCTAGATA
CAAATTCAGTTTCTTCAGATTCAGCTTCAGAGACAAGTGACACTACAGAG
ACAGCATCAATATTAGGTAAAAGGAAGCTCTGTTTTTATAATAATTATTA
TCTTTTGATTACCAATTTTTTTCAGTTTGATGTTACTATGTAATGCTATT
ATTAAATTCAAATTTCATAAATTTAGACATTCTTAATTTTTCATACCAAC
TTCAGGATACGAAGATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAG
AATCAGCGTATGATATTCCTCTGGGTAAATAAAGTTTTTTCGTTTGAATT
GTAACTTGGTTATCATTTGCACGATTATCCTAACTCGAACACTTTTAAAA
AATTTATACAATTTAAGTCGTGCGACTGATGAAATCACGAAGCTAGATGG
CAAAATGAAGATTCATCTCCAATCAATTGCATATCAGTAGAGTCAGGCAT
ATGGGAATCTACAATTCAATGTAAATCTCAACAAGTCATAGCCTCTAATG
TCAATATTTTGCAACAAAAAATAATTAAAACGACTACGTTATTTCAGACT
TTCGTGTTCCTTCTTTTTTTATTAGTACCGTTTAAAAACTTGTCAACAAG
AGGAAAACAAACTTTTTCATGGCTAATAGGAACCGAACTTGCGCTAGACA
GAATGAACCAGTGTTGTGATATTGAAACAAGTGCCATTATTCCTTTCACG
AAAATGAAACACAAAGATTCTTTCCGTGATCCTTCTGTGGACTTAGAAAT
CGTAAAAGACCTTGTTTCAGACGCAGTGTATAAAATAATAGAAAATTATC
AATCGATGTGCAAAAACAAAAGAACTGGACCTGTGGAGATTGCCGTAGAA
AAGTCGCTCACGGGATCAGTTGTGATAGATGCCACCAATGGTATCATTTC
AAATGCTCCAAATTGAAAACTGCCAACAACATTGGAAGTGACGAGATTTG
GATTTGCAATGATTGTAAACAAAATCACGAGATCG

Coding sequence (CDS) from alignment at sc0000079_pilon:720516..721850-

>MSTRG.11090.1.p1 ID=MSTRG.11090.1.p1|Name=MSTRG.11090.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2340bp|location=Sequence derived from alignment at sc0000079_pilon:720516..721850- (Clytia hemisphaerica_ch_hm2_pilon)
TACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCATGGCTA
ATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGATATTGA
AACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTCTTTCC
GTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAGACGCA
GTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAAAGAAC
TGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGTTGTGA
TAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATACGAAG
ATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGTATGAT
ATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAGACAAG
TGACACTACAGAGACAGCATCAATATTAGGATGAAAGTTCGAGTAATTTC
CCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTTGAATG
GGAGCGAAGCCTGCAATGGATTCGAGAAGGACATTTACCGTTTAAAAACT
TGTCAACAAGAGGAAAACAAACTTTTTCATGGCTAATAGGAACCGAACTT
GCGCTAGACAGAATGAACCAGTGTTGTGATATTGAAACAAGTGCCATTAT
TCCTTTCACGAAAATGAAACACAAAGATTCTTTCCGTGATCCTTCTGTGG
ACTTAGAAATCGTAAAAGACCTTGTTTCAGACGCAGTGTATAAAATAATA
GAAAATTATCAATCGATGTGCAAAAACAAAAGAACTGGACCTGTGGAGAT
TGCCGTAGAAAAGTCGCTCACGGGATCAGTTGTGATAGATGCCACCAATG
GTATCATTTCAAATGCTCCAAATTGAGATACGAAGATTCGGAGAAAGACG
AAGAAGAAATAGAAGTACAAGAATCAGCGTATGATATTCCTCTGGATACA
AATTCAGTTTCTTCAGATTCAGCTTCAGAGACAAGTGACACTACAGAGAC
AGCATCAATATTAGGATGAAAGTTCGAGTAATTTCCCACCTGAGAGAAAG
TCTAGTGAACCGCATGTATTGGACGATGTTGAATGGGAGCGAAGCCTGCA
ATGGATTCGAGAAGGACATTTACCGTTTAAAAACTTGTCAACAAGAGGAA
AACAAACTTTTTCATGGCTAATAGGAACCGAACTTGCGCTAGACAGAATG
AACCAGTGTTGTGATATTGAAACAAGTGCCATTATTCCTTTCACGAAAAT
GAAACACAAAGATTCTTTCCGTGATCCTTCTGTGGACTTAGAAATCGTAA
AAGACCTTGTTTCAGACGCAGTGTATAAAATAATAGAAAATTATCAATCG
ATGTGCAAAAACAAAAGAACTGGACCTGTGGAGATTGCCGTAGAAAAGTC
GCTCACGGGATCAGTTGTGATAGATGCCACCAATGGTATCATTTCAAATG
CTCCAAATTGAGATACGAAGATTCGGAGAAAGACGAAGAAGAAATAGAAG
TACAAGAATCAGCGTATGATATTCCTCTGGATACAAATTCAGTTTCTTCA
GATTCAGCTTCAGAGACAAGTGACACTACAGAGACAGCATCAATATTAGG
ATGAAAGTTCGAGTAATTTCCCACCTGAGAGAAAGTCTAGTGAACCGCAT
GTATTGGACGATGTTGAATGGGAGCGAAGCCTGCAATGGATTCGAGAAGG
ACATTTACCGTTTAAAAACTTGTCAACAAGAGGAAAACAAACTTTTTCAT
GGCTAATAGGAACCGAACTTGCGCTAGACAGAATGAACCAGTGTTGTGAT
ATTGAAACAAGTGCCATTATTCCTTTCACGAAAATGAAACACAAAGATTC
TTTCCGTGATCCTTCTGTGGACTTAGAAATCGTAAAAGACCTTGTTTCAG
ACGCAGTGTATAAAATAATAGAAAATTATCAATCGATGTGCAAAAACAAA
AGAACTGGACCTGTGGAGATTGCCGTAGAAAAGTCGCTCACGGGATCAGT
TGTGATAGATGCCACCAATGGTATCATTTCAAATGCTCCAAATTGAGATA
CGAAGATTCGGAGAAAGACGAAGAAGAAATAGAAGTACAAGAATCAGCGT
ATGATATTCCTCTGGATACAAATTCAGTTTCTTCAGATTCAGCTTCAGAG
ACAAGTGACACTACAGAGACAGCATCAATATTAGGATGAAAGTTCGAGTA
ATTTCCCACCTGAGAGAAAGTCTAGTGAACCGCATGTATTGGACGATGTT
GAATGGGAGCGAAGCCTGCAATGGATTCGAGAAGGACATT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11090MSTRG.11090Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11090.1.p1MSTRG.11090.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11090.1.p1.exon4MSTRG.11090.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11090.1.p1.exon3MSTRG.11090.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11090.1.p1.exon2MSTRG.11090.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11090.1.p1.exon1MSTRG.11090.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:720516..721850 -