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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000079_pilon:498040..505569+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11077.1.p1 ID=MSTRG.11077.1.p1|Name=MSTRG.11077.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7530bp|location=Sequence derived from alignment at sc0000079_pilon:498040..505569+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTACTTTTCCACACCCTCTAAAGTCCCTCAAAGGTgaacaaaaaccatt
aaaaacacGTTAGGGctccaaaattagaaaaagcaaaactcaactccctc
aaagagtcataaattctaaattaaaattaaaaattaaaatttatttatct
ataaattaaaaaagtcaaaaaatgaacaattttttttgaaattcagtctc
tttaagggttgattttcgaactttgTCTCGGACATACCTGTCATCTTGCA
AACCTATCACCCCTGGGGTTGAAGGATGAGCACCCTCAGAAAAACCATCA
ATCAAAGGACTCAGTATTTTCCATGATTAAAAGGTACAAAAAGGTTAGGG
GACAGTGCCTATGCTGGTTAAATTTCAGCTCATTGGAAATTTTCATTCGA
ATTCTATTTTCCAGGTTTTCAAAATCCATGTAAACTTGTAATTTGTAAGC
ATGTCAAACTTTCcagaaataaattttaaagagTCTCTAGAAGAGCTGGA
AGAACCCAAAATAAACGACTTTGAACTCTTTGTAGAATGTTCTGGTGTTC
AAATTCATCGCAAATTTTTGCCTGTAAGTTTAATCGTTCCACACTTTATT
ATTGAAGTGCTTGTTTTAATTATTTGGATCCTCTTCTTTGAAAGACTCAC
TTCAATCTTGGGTCTCCTTCACTACTTAAAGGAATAGTGTATTGCtacgc
aaatcaaaatattatggtcacgtgtctggaatttgattggtcgagcgcga
taaaagtttacaatttgattggtcgaacgggattttcactttcgttttcg
taatctaaacaaaccgaaaaatactttgcgacataaaaaagttgggaggg
gaatgaaaaatctttcgtgtaatttcttctgtcttctatcatacttatat
gaaggaaattttctgttttgctatgccaaaattgattcacaaatgtaaat
actacacagtttttctatacacaaagagattgtgagatgagaagatataa
acagttcttttttgttttcctgtgttctttgtgtttcatcaagagcagat
gaacaaaataacaaatataaataaagcataaaacattttttgaaaaaaat
aacatcacattacaaaattCctgtatatacatttggattttgaaaactat
ataaagtatttacaaattctttatagcttcacttttatcaagagtgatgc
aaaagtatttgaataataatatgacctcctctttgaaattgccttccaaa
atatttctttccattcaaaaaaacatctcaattaaagcaccctcagaatt
tttcacacagtactgtagcacttcatagggaaaactgttggtgaaaaaat
actttttttagcagaaaatgtttttaatatcttaaaattttatcattgag
tatatgtatttatcgtcacttcatacaacatcagtcacaatattccacat
tcactcaagttaacaacgtaaataaaatgtaaacagttcttcttacagca
gcatatccataccactgtaaaaaatgcagcTATGTCCATCCATCACAAAA
CAAACTGGTACATGAAAAATACGTTCAACTGTTCCCAAATCATAGCATGT
ACAAGGACTTTCAAAAAGGGTGCAGAGATATGTAGCTTCAGAGTCGAACC
ATGCCAGAAGCACAAGAAGACAAAGTCCCTTGATCAAtggtttgatttta
attttcaatgatagtcacaggattttaaatttaatcaatcAAGTGTCTAC
TGtaacttttatttcataaaattccaaatcagtacCATATGATGCTCAGA
ACCAGACAGAGTCTCTCGTTCATCCGTAGAGTTACTTTtaacttcatttt
atttggtttgtgcaaaatctcatgatacagtgcttttatcgagaaaataa
tatccACGTTCCATCATGATTATATCGAAGTATTCTGAAGTTATGTAGTC
TACAGTCTccagagttgatttttcaagtcattggatgaacaaaaatgtcc
catattttgaagtacgaaccatgaaaatcttctttgaacaaggctttctt
gtcttgatgagtttcattcacttctcagatccatatatGGACACTTTCGA
GAAATGAACAAGTCTTTCTTGTCttgttgatgagtttcatttcaCTATCT
CATCCATAGCACACTTcgagagaaaatagaaatctcttttcctcttgaGG
TTCAAAATGCTACcttgttatttaactgaaagaacAAGAGAAGAGATAGT
TCTGTATAAATTGGTTACAAAAAGGAATTCAACCTTGATATTAAATATCT
TCTTGTATCTTCAccatcatagaaaaataaacattgaaactttcCATAAT
GATAGTtcaataataatatgacctatTTCAGTTAATATTAACACTGCTCA
GCCACAAAATGATCAATGAAGATCTCGTAAAGATTGCAgtttttctcaat
aaaaattttccagtcGCCATTTTCTTCTAGCTCGTTTTTTGAGCAAGACT
AGAATCTCGTTTGGTTTTCTCGCGCCCTTGACGGGAAATACTCACTCGGG
TAGTTTTACTTTTTGCGGGAAAAACATGAGCGAGTTTCTTTGCTGTCGAG
TTCAACTGTAGCAATACACTATTCCTTTAATCTTTTTCTATATATCTTCT
ACCCTAAACATTGTCGATCCCCTTACTCATTGATTTTCaggtaaatattt
ttcagagttttatttttttttatctttaattgTTCgatagcctccttttc
aaaaagatccacccaaaagatttttaaatttggctttcAGCCCTCTTAAT
AATCCTTGAAAGATATCTAGATTGCAACACTGCGTTCGTATTATATATTT
CCACCCATCCGGCTATTCTATTTTAATTAGTAGtgtaattttgtttattt
taataaaaaataaaattataaaaataaccTCTTTTCTTTGAAATCTTCTA
AAATCTTCTATAGGAGTCGTCATTATACGAATACAAAGTGCTAGGTGAGT
TGAAGAGTGACGTCCAAACGTTTGTCAAAGTTTACATGGATTTGGAATAT
CGCAAATCATGGGATTCGTATGTAAAAGGTACGAAAACTACCTTATTGAT
ATTatatttcgcgtgtattaaatttcgcgattcactaaattgggcatttt
caaaaagtggtaataaagaaagaaaatgactgatttcgcttgaaacacaa
cttattgccgacccaaaaaaatatgagcgttttgattggtcgagagcatc
gagatatttgcgatatttcatatttctctagtctggaaatatgaccgcgt
tgacttttgggggactgggtaagcggcgggagaaaaatcaaaacaaaacc
accgaaaagaactgactttcggagaaactgacttgggagtcaaagggaaa
acgcaacaaaaatattttcagattaacttttactttggagttcttccata
aaagacactaaaatcaaatctgatgaactaagaaattataaaactacttg
agaccaccgaaatattttcagcttttggtataaaattcgtccttgtgtga
taaccaaacagttttttatcaatgcatacaaaaaaacttgagattcttga
atgtttgccaataagatttctcataacatagcaagggaactgaaatgtct
tgtattaaaccaagtgacgagtgatttttataaaagttctctcctaattc
tcgttctcgacgaggtacgtccttgaattttcaactcaacaatcatttac
atcttccttctaaaattcgaaacatttaaagcttgacgataatcaagaaa
gtatccaaattgttttgctcttgaaaaaatgttgttcttttaaCCATtac
atacatttccatcatggaacTTCTTTCATCCTCTGctgctattcttttcc
atgcatcgaaaTAAAAACATAggaaaagactgaatgttatcaatctgatt
aatccaatgatgaagggtttcttctctatcgaaacaatactgtacaccat
ctgcattttgaattatcaatctagaaactttcaaatacatctctgaaaat
cTGCAATTCTCTTCAacacaaaacttctggatcgaaaatgatcgaaaatg
cttctctgttttgtttttgtgtgaatattttcggcgggaacatatcgaat
gttttattgttcgaatctaacgttcgaattagattttcgaataaaaacat
tcgaaactacacagaagaaagaagcaaggcggaagtaagttttaaaacaa
aaacaaaaataaatttatatcaggacaatttttttgagtcgacaataaat
tagttatcacatgacttctcgtgcaatactcgatattttactcgttccga
gattttaccgatatttttcctcgcctaaaggctcggaaaaatattacgga
aaaatctcggaactcgtaaaatatttctcgtattgcactcgaagtcatgc
gataactagtacgtattgggtgtaaacataccaaaaatagtaacaaaact
agtgacaaaaatagtaactaagtgtaacaaataagtattttcgattttcg
acctattttgaaaattgttcgcgtgtatttaatttcgcgattttgttttt
tttgaaaaatttaaacggtattaaatttcgcgaaatttggcctaaaaaat
cgcgaaattaagtacctgTGAAATTTTGTAACACACgaatataataccaa
taaggtaagAACCATTTTGAAAGGTCGACACGTTTGTCAGTCTATTATGT
ACATAAAGCCATGTGCTCGATCAAAACTTTATCAATTATTCGGTAAACAT
ATCTTTATTGCCAGGTTTTTTACATCTGTGGAGATTGTAAATCAGCATTT
TATaatatttgttatttttaatttttagagcTGTATGAGAAAGAAGATGA
ACATGAAGGATCCTTTATTTATTGGAATGTTAACTATCCTTTCCCATTGG
CTAATCGGGAtgtatcttttcaaaaattattcctCGTGTTATGTCTGTCA
acacgaaaaatcatttaagaTAACGTACCAAGCTATCATACCCCTGTAAA
AATTCAAACAGCGCCGCGGCGCTTATTTTGAGGAAATACGGTATTCGCAA
TCTGAAATTACTTTACTAGTGGTGTAACAGGAACAAGAGTACATTACTCA
CAAAGGCCACGAGTAAATctattgaacaaaaatttgactttcatTTTACG
CGATTTAAGCGATCTAAGGTCTCCAATGTACGTcctgttttttttgaaaa
attagtgaATGAATTTTTAGGTATTTTGATAATCAAATCTTTGATGGCAA
GTAGAAAAGTCCATTCCTTAACAAACGTTACTTTACCGTACCTATAGTAT
ACTTACATACGAGAATGTAGAGAAATGACAGAAGAGACGACAAATAAAAC
ACCAACTTGGGTCATCTTATCAGAAAGCAAACAAATTTCTTCTTGTCCAG
ACAAGTCGGGTGTAGTTCGTGTCAACGATTACAAACAAAACTTGAGCATA
CAACATAAAGATGAAAACACTACGAAAcgtttgttattttcttttcttta
gagAGTTAAAGATTTTCTAATACTCTCTACACACGGGTTCGAAAACCCTC
CTCGGTGGAAAAACTTGCCTCTATTTGGGggaaaagtcaaaatttagttg
cAGAGTCTATGGCTACCCTACTAAAAGGCCAGATGATCGAGTAAACAAAA
ATAAGCTACCAATAACTTATCTAATCTCTCATTGAGTTAATTGCTCACTT
TACACGTTTATATGATAAAGATATTaggatatcaaaatttgaaaatcaat
acTTTGAGGGATTGAATTTCGAGAATTTGTCCtttttttGAGGCTTTTGC
GAcacttagagagactacttttcCCAATTTTCAGCCGGAATTTTCAGATT
AAATCCAATTTCCGAGAATTAATGACCCTTTGATGGAGTCGGTTTTTGAT
ATTTCGTAATTTTGAGACCTTTTTAGGGACTCTTTGCCAATTCATGTTta
ttgtacccctttgagagacttttgagagctaaaaaagggacccttatgac
TCGCACATTGATACCTTACTCTTAggtttcaaataaacggggggggggtt
ggaaaattttctagattttaataaacagggggggacctaattgccggggg
gttggaaattgtacttcttaaacccaaaaataaggtaaaaataggctaaa
atcaggctatttagagcaaaataaggagccttctctttgacagctgaaaa
tattcttagagattaataaacgggggggtcctaataaggtccgggggggg
gttggaaatttttcgaaaaattgacaaGCGGGGggccccgtttatttgga
acctaagagtatccTTTAGTCTGAACTTtatttttgcaagttttttgTCT
TCTGTTTTCAGTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATAC
CCACATGGCTCATCAACTGGGCTGCTAAGGTTTGTTTTGCATAAAGTTAA
TCTTttctaaaaacttgaaattgaaTTGTCCTTTTTCGTTGTAAAAAggc
atttttcatgtttttcttatCCAGATATTATTACCATTACGATTTCAGCC
CCATTTTGAATAACTTCtcttgtaatttttcttttccttgtaGAAAGGAG
TTCCAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCtatccaaaa
tatttggaaaagaaaaaaaaggggaaaaagtGAACTGACTTATTCGAACG
TCTAGGATTTTTATTATAATGCATGCATTTTATTACCACCAAATCACTCA
TCCCTCTTTGAGATATTTTACGTGTTAGCCCAGTGATTACTAGATGACGT
TAATGATGAGTGGTCAAGGCGTCAACTCCTTACGACTTTTAGATTCTTTT
GATAGTTTTCACGGGGTCTATTGTCTGCTGGTTGGGCTTTTTTGAACTGA
TTGGAACACTGTGGGAATTCTAACAGGAAACTGACGCTTTGACCACTCAG
CCATTGCTCCTCAGTTAAAAAGAACATTGCTTATAATATAAGCGTCACCT
GGTACAACTAgtgtaatttctttttctttctattaaagttttttttcgac
aAGATAAAAGTTGTATTCTCGGTGAAGTGATGTTATGAACTTCAGGGTGT
AAACAATTTTTTAGTGTTTTGGTTTACAGTCTAGTCTTTCTAGATTTTTA
CGAAATGAGGGTTTTAGCTGATTCATAATTACACGGAATCATCGATAAGT
TGAGAAtcttttttaactgtttttgtttttgtttttatgcacaaacattt
tgtctgtttttCGTTAGGATATGCTCCGACTTTAGgtcatttttaataaa
aaacatatttattaattttgagtttggaaactattctagtcgcgagttag
ggagttgctagtttcgagtttcgagttggggagttaaaaaattaccggct
accgaaaaagaataacatacatcaaaagtacgattttgaaagtaaatgta
atatgagagtaatatataacacatataata Coding sequence (CDS) from alignment at sc0000079_pilon:498040..505569+ >MSTRG.11077.1.p1 ID=MSTRG.11077.1.p1|Name=MSTRG.11077.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3960bp|location=Sequence derived from alignment at sc0000079_pilon:498040..505569+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAAACTTTCcagaaataaattttaaagagTCTCTAGAAGAGCTGGA
AGAACCCAAAATAAACGACTTTGAACTCTTTGTAGAATGTTCTGGTGTTC
AAATTCATCGCAAATTTTTGCCTGAGTCGTCATTATACGAATACAAAGTG
CTAGGTGAGTTGAAGAGTGACGTCCAAACGTTTGTCAAAGTTTACATGGA
TTTGGAATATCGCAAATCATGGGATTCGTATGTAAAAGagcTGTATGAGA
AAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTTAACTATCCT
TTCCCATTGGCTAATCGGGAtTATACTTACATACGAGAATGTAGAGAAAT
GACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAA
GCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAAC
GATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAA
AcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATACCCACATGGC
TCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTTCTTGACAGAAATG
AAGAAGGCGTCCGATGGCtatccaaaatatttggaaaagaaaaaaaaggg
gaaaaagtGAATGTCAAACTTTCcagaaataaattttaaagagTCTCTAG
AAGAGCTGGAAGAACCCAAAATAAACGACTTTGAACTCTTTGTAGAATGT
TCTGGTGTTCAAATTCATCGCAAATTTTTGCCTGAGTCGTCATTATACGA
ATACAAAGTGCTAGGTGAGTTGAAGAGTGACGTCCAAACGTTTGTCAAAG
TTTACATGGATTTGGAATATCGCAAATCATGGGATTCGTATGTAAAAGag
cTGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGT
TAACTATCCTTTCCCATTGGCTAATCGGGAtTATACTTACATACGAGAAT
GTAGAGAAATGACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATC
TTATCAGAAAGCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGT
TCGTGTCAACGATTACAAACAAAACTTGAGCATACAACATAAAGATGAAA
ACACTACGAAAcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATA
CCCACATGGCTCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTTCTT
GACAGAAATGAAGAAGGCGTCCGATGGCtatccaaaatatttggaaaaga
aaaaaaaggggaaaaagtGAATGTCAAACTTTCcagaaataaattttaaa
gagTCTCTAGAAGAGCTGGAAGAACCCAAAATAAACGACTTTGAACTCTT
TGTAGAATGTTCTGGTGTTCAAATTCATCGCAAATTTTTGCCTGAGTCGT
CATTATACGAATACAAAGTGCTAGGTGAGTTGAAGAGTGACGTCCAAACG
TTTGTCAAAGTTTACATGGATTTGGAATATCGCAAATCATGGGATTCGTA
TGTAAAAGagcTGTATGAGAAAGAAGATGAACATGAAGGATCCTTTATTT
ATTGGAATGTTAACTATCCTTTCCCATTGGCTAATCGGGAtTATACTTAC
ATACGAGAATGTAGAGAAATGACAGAAGAGACGACAAATAAAACACCAAC
TTGGGTCATCTTATCAGAAAGCAAACAAATTTCTTCTTGTCCAGACAAGT
CGGGTGTAGTTCGTGTCAACGATTACAAACAAAACTTGAGCATACAACAT
AAAGATGAAAACACTACGAAAcTGTTCATGCATTACAAAGACAACCCAGG
AGGTTCAATACCCACATGGCTCATCAACTGGGCTGCTAAGAAAGGAGTTC
CAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCtatccaaaatat
ttggaaaagaaaaaaaaggggaaaaagtGAATGTCAAACTTTCcagaaat
aaattttaaagagTCTCTAGAAGAGCTGGAAGAACCCAAAATAAACGACT
TTGAACTCTTTGTAGAATGTTCTGGTGTTCAAATTCATCGCAAATTTTTG
CCTGAGTCGTCATTATACGAATACAAAGTGCTAGGTGAGTTGAAGAGTGA
CGTCCAAACGTTTGTCAAAGTTTACATGGATTTGGAATATCGCAAATCAT
GGGATTCGTATGTAAAAGagcTGTATGAGAAAGAAGATGAACATGAAGGA
TCCTTTATTTATTGGAATGTTAACTATCCTTTCCCATTGGCTAATCGGGA
tTATACTTACATACGAGAATGTAGAGAAATGACAGAAGAGACGACAAATA
AAACACCAACTTGGGTCATCTTATCAGAAAGCAAACAAATTTCTTCTTGT
CCAGACAAGTCGGGTGTAGTTCGTGTCAACGATTACAAACAAAACTTGAG
CATACAACATAAAGATGAAAACACTACGAAAcTGTTCATGCATTACAAAG
ACAACCCAGGAGGTTCAATACCCACATGGCTCATCAACTGGGCTGCTAAG
AAAGGAGTTCCAAGCTTCTTGACAGAAATGAAGAAGGCGTCCGATGGCta
tccaaaatatttggaaaagaaaaaaaaggggaaaaagtGAATGTCAAACT
TTCcagaaataaattttaaagagTCTCTAGAAGAGCTGGAAGAACCCAAA
ATAAACGACTTTGAACTCTTTGTAGAATGTTCTGGTGTTCAAATTCATCG
CAAATTTTTGCCTGAGTCGTCATTATACGAATACAAAGTGCTAGGTGAGT
TGAAGAGTGACGTCCAAACGTTTGTCAAAGTTTACATGGATTTGGAATAT
CGCAAATCATGGGATTCGTATGTAAAAGagcTGTATGAGAAAGAAGATGA
ACATGAAGGATCCTTTATTTATTGGAATGTTAACTATCCTTTCCCATTGG
CTAATCGGGAtTATACTTACATACGAGAATGTAGAGAAATGACAGAAGAG
ACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAAGCAAACAAAT
TTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAACGATTACAAAC
AAAACTTGAGCATACAACATAAAGATGAAAACACTACGAAAcTGTTCATG
CATTACAAAGACAACCCAGGAGGTTCAATACCCACATGGCTCATCAACTG
GGCTGCTAAGAAAGGAGTTCCAAGCTTCTTGACAGAAATGAAGAAGGCGT
CCGATGGCtatccaaaatatttggaaaagaaaaaaaaggggaaaaagtGA
ATGTCAAACTTTCcagaaataaattttaaagagTCTCTAGAAGAGCTGGA
AGAACCCAAAATAAACGACTTTGAACTCTTTGTAGAATGTTCTGGTGTTC
AAATTCATCGCAAATTTTTGCCTGAGTCGTCATTATACGAATACAAAGTG
CTAGGTGAGTTGAAGAGTGACGTCCAAACGTTTGTCAAAGTTTACATGGA
TTTGGAATATCGCAAATCATGGGATTCGTATGTAAAAGagcTGTATGAGA
AAGAAGATGAACATGAAGGATCCTTTATTTATTGGAATGTTAACTATCCT
TTCCCATTGGCTAATCGGGAtTATACTTACATACGAGAATGTAGAGAAAT
GACAGAAGAGACGACAAATAAAACACCAACTTGGGTCATCTTATCAGAAA
GCAAACAAATTTCTTCTTGTCCAGACAAGTCGGGTGTAGTTCGTGTCAAC
GATTACAAACAAAACTTGAGCATACAACATAAAGATGAAAACACTACGAA
AcTGTTCATGCATTACAAAGACAACCCAGGAGGTTCAATACCCACATGGC
TCATCAACTGGGCTGCTAAGAAAGGAGTTCCAAGCTTCTTGACAGAAATG
AAGAAGGCGTCCGATGGCtatccaaaatatttggaaaagaaaaaaaaggg
gaaaaagtGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079_pilon | genome | sc0000079_pilon:498040..505569 + |
|
